Researcher
Juan Antonio Vizcaíno
European Bioinformatics Institute
Statistics
104 papers found
All papers authored by Juan Antonio Vizcaíno
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,
Bachir Balech ,
Josephine Burgin ,
Physilia Chua ,
Erwan Corre,
Cymon J. Cox,
Claudio Donati,
Vitor Martins dos Santos,
Bruno Fosso,
John Hancock,
Katharina F. Heil ,
Naveed Ishaque ,
Varsha Kale,
Benoit J. Kunath,
Claudine Médigue
and 10 other authors
Establishing the ELIXIR Microbiome Community
Download from doi.org
,
Pınar Altıner,
Salvador Capella-Gutierrez ,
José M. Fernández ,
Yanick Paco Hagemeijer ,
Peter Horvatovich ,
Martin Hubálek ,
Fredrik Levander ,
Pierluigi Mauri,
Magnus Palmblad ,
Wolfgang Raffelsberger,
Laura Rodríguez-Navas,
Dario Di Silvestre,
Balázs Tibor Kunkli ,
Julian Uszkoreit
and 4 other authors
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows
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,
Annalisa Buniello ,
Catherine Brooksbank,
Kim T. Gurwitz,
Matthew Hall,
Matthew Hartley,
David G. Hulcoop,
Andrew R. Leach,
Diana Marques ,
Maria Martin,
Aziz Mithani,
Ellen M. McDonagh ,
Euphemia Mutasa-Gottgens,
David Ochoa ,
Yasset Perez-Riverol
and 6 other authors
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023
Download from doi.org
,
Yasset Perez-Riverol ,
Kris Gevaert,
Juan Antonio Vizcaíno ,
Lennart Martens
lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation
Download from doi.org
,
Viktoria Dorfer ,
Lennart Martens ,
Isabell Bludau,
Robbin Bouwmeester ,
Sven Degroeve ,
Eric W. Deutsch ,
Siegfried Gessulat,
Lukas Käll ,
Pawel Palczynski,
Samuel H. Payne ,
Tobias Greisager Rehfeldt ,
Tobias Schmidt ,
Veit Schwämmle ,
Julian Uszkoreit
and 3 other authors
Toward an Integrated Machine Learning Model of a Proteomics Experiment
Download from pubs.acs.org
,
David García-Seisdedos,
Shengbo Wang,
Deepti Jaiswal Kundu,
Andrew Collins,
Nancy George,
Pablo Moreno,
Irene Papatheodorou,
Andrew R. Jones ,
Juan Antonio Vizcaíno
Integrated View of Baseline Protein Expression in Human Tissues
Download from pubs.acs.org
,
Alex Bateman ,
Cath Brooksbank,
Mallory Freeberg ,
Melissa Harrison,
Matthew Hartley,
Thomas Keane ,
Gerard Kleywegt,
Andrew Leach ,
Mariia Levchenko ,
Sarah Morgan,
Ellen M. McDonagh ,
Sandra Orchard ,
Irene Papatheodorou ,
Sameer Velankar
and 4 other authors
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2022
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,
David García-Seisdedos,
Ananth Prakash ,
Deepti Jaiswal Kundu ,
Andrew Collins ,
Nancy George ,
Silvie Fexova ,
Pablo Moreno ,
Irene Papatheodorou,
Andrew R. Jones ,
Juan Antonio Vizcaíno
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues
Download from doi.org
,
David García-Seisdedos ,
Ananth Prakash ,
Paul Brack,
Peter Crowther,
Robert L. Graham,
Nancy George,
Suhaib Mohammed,
Pablo Moreno ,
Irene Papathedourou,
Irene Papatheodorou ,
Simon J. Hubbard ,
Juan Antonio Vizcaíno
Download from www.nature.com
,
Silvie Fexova,
Nancy George,
Jonathan R. Manning ,
Zhichiao Miao ,
Suhaib Mohammed,
Alfonso Muñoz-Pomer,
Anja Fullgrabe ,
Yalan Bi,
Natassja Bush,
Haider Iqbal,
Upendra Kumbham,
Andrey Solovyev,
Lingyun Zhao,
Ananth Prakash
and 19 other authors
Expression Atlas update: gene and protein expression in multiple species
Download from doi.org
,
Jingwen Bai,
Chakradhar Bandla,
David García-Seisdedos,
Suresh Hewapathirana,
Selvakumar Kamatchinathan,
Deepti J. Kundu,
Ananth Prakash ,
Anika Frericks-Zipper,
Martin Eisenacher,
Mathias Walzer,
Shengbo Wang,
Alvis Brazma,
Juan Antonio Vizcaíno
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
Download from doi.org
,
Julianus Pfeuffer,
Elizaveta M. Solovyeva ,
Jingwen Deng,
Pablo Moreno ,
Selvakumar Kamatchinathan,
Deepti Jaiswal Kundu,
Nancy George ,
Silvie Fexova,
Björn Grüning ,
Melanie Christine Föll,
Johannes Griss ,
Marc Vaudel ,
Enrique Audain
and 25 other authors
A proteomics sample metadata representation for multiomics integration and big data analysis
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,
Yasset Perez-Riverol ,
Jeremy Carver,
Shin Kawano ,
Luis Mendoza,
Tim Van Den Bossche ,
Ralf Gabriels ,
Pierre-Alain Binz ,
Benjamin Pullman ,
Zhi Sun,
Jim Shofstahl,
Wout Bittremieux ,
Tytus D. Mak,
Joshua Klein,
Yunping Zhu
and 3 other authors
Universal Spectrum Identifier for mass spectra
Download from www.nature.com
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Karlis Freivalds,
James C. Wright ,
Mārtiņš Opmanis ,
Darta Rituma,
Fatemeh Zamanzad Ghavidel,
A. J. Jarnuczak,
Andrew F. Jarnuczak,
Edgars Celms ,
Kārlis Čerāns ,
K. Cerans,
Inge Jonassen,
Lelde Lace ,
Juan Antonio Vizcaíno,
Juan Antonio Vizcaíno
and 3 other authors
Using Deep Learning to Extrapolate Protein Expression Measurements
Download from onlinelibrary.wiley.com
,
Andrew F. Jarnuczak,
Maja Gehre ,
Cristina Viéitez ,
Margaret Soucheray,
André Mateus ,
Askar A. Kleefeldt ,
Anthony Hill ,
Luz Garcia-Alonso,
Frank Stein ,
Nevan J. Krogan ,
Mikhail M. Savitski,
Danielle L. Swaney,
Juan Antonio Vizcaíno ,
Kyung-Min Noh
and 1 other authors
The functional landscape of the human phosphoproteome
Download from www.nature.com
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Jonathan Manning ,
Alfonso Muñoz-Pomer Fuentes,
Nancy George,
Silvie Fexova,
Nuno A. Fonseca ,
Anja Füllgrabe ,
Matthew Green,
Ni Huang,
Laura Huerta,
Haider Iqbal,
Monica Jianu,
Suhaib Mohammed,
Lingyun Zhao
and 10 other authors
Expression Atlas update: from tissues to single cells
Download from doi.org
,
Marta Vilaseca ,
Juan Antonio Vizcaíno,
Paul M. Thomas ,
Michael R. Shortreed,
Leah V. Schaffer,
Ryan T. Fellers,
Richard D. LeDuc,
Trisha Tucholski,
Julia Chamot-Rooke ,
Ying Ge,
Joseph Gault ,
Joseph A. Loo ,
Jeffrey N. Agar ,
Ljiljana Paša-Tolić
and 7 other authors
A five-level classification system for proteoform identifications
Download from www.nature.com
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Suresh Hewapathirana,
Deepti J. Kundu,
Avinash Inuganti,
Johannes Griss,
Gerhard Mayer,
Martin Eisenacher,
Enrique Pérez ,
Julian Uszkoreit,
Julianus Pfeuffer,
Timo Sachsenberg,
Şule Yılmaz
and 8 other authors
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Mingze Bai ,
Felipe da Veiga Leprevost ,
Silvano Squizzato ,
Young Mi Park ,
Kenneth Haug ,
Adam J. Carroll,
Dylan Spalding ,
Justin Paschall,
Mingxun Wang,
Noemi del-Toro ,
Tobias Ternent,
Peng Zhang,
Nicola Buso ,
Nuno Bandeira
and 19 other authors
Discovering and linking public omics data sets using the Omics Discovery Index
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