All papers authored by Miten Jain
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2023
Mikhail Kolmogorov 
,
Kimberley J. Billingsley ,
Mira Mastoras ,
Melissa Meredith ,
Jean Monlong,
Ryan Lorig-Roach,
Mobin Asri,
Pilar Alvarez Jerez,
Laksh Malik,
Ramita Dewan ,
Xylena Reed,
Rylee M. Genner,
Kensuke Daida ,
Sairam Behera ,
Kishwar Shafin
and 15 other authors
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,
Kimberley J. Billingsley ,
Mira Mastoras ,
Melissa Meredith ,
Jean Monlong,
Ryan Lorig-Roach,
Mobin Asri,
Pilar Alvarez Jerez,
Laksh Malik,
Ramita Dewan ,
Xylena Reed,
Rylee M. Genner,
Kensuke Daida ,
Sairam Behera ,
Kishwar Shafin
and 15 other authors
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Alexey Kolesnikov,
Daniel Cook ,
Maria Nattestad,
Lucas Brambrink,
Brandy McNulty,
John Gorzynski ,
Sneha Goenka ,
Euan A. Ashley ,
Miten Jain ,
Karen H. Miga ,
Benedict Paten ,
Pi-Chuan C. Chang ,
Andrew Carroll ,
Kishwar Shafin
,
Maria Nattestad,
Lucas Brambrink,
Brandy McNulty,
John Gorzynski ,
Sneha Goenka ,
Euan A. Ashley ,
Miten Jain ,
Karen H. Miga ,
Benedict Paten ,
Pi-Chuan C. Chang ,
Andrew Carroll ,
Kishwar Shafin
Local read haplotagging enables accurate long-read small variant calling
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Arang Rhie ,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
The complete sequence of a human Y chromosome
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Wen-Wei Liao ,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng ,
Justin Chu,
Vincenza Colonna
and 104 other authors
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng ,
Justin Chu,
Vincenza Colonna
and 104 other authors
A draft human pangenome reference
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2022
Ariel Gershman ,
Michael E. G. Sauria ,
Xavi Guitart ,
Mitchell R. Vollger ,
Paul W. Hook ,
Savannah J. Hoyt ,
Miten Jain ,
Alaina Shumate ,
Roham Razaghi ,
Sergey Koren ,
Nicolas Altemose ,
Gina V. Caldas,
Glennis A. Logsdon ,
Arang Rhie ,
Evan E. Eichler
and 5 other authors
,
Michael E. G. Sauria ,
Xavi Guitart ,
Mitchell R. Vollger ,
Paul W. Hook ,
Savannah J. Hoyt ,
Miten Jain ,
Alaina Shumate ,
Roham Razaghi ,
Sergey Koren ,
Nicolas Altemose ,
Gina V. Caldas,
Glennis A. Logsdon ,
Arang Rhie ,
Evan E. Eichler
and 5 other authors
Epigenetic patterns in a complete human genome
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Sergey Nurk ,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
The complete sequence of a human genome
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John E. Gorzynski ,
Sneha D. Goenka ,
Kishwar Shafin ,
Tanner D. Jensen,
Dianna G. Fisk,
Megan E. Grove,
Elizabeth Spiteri,
Trevor Pesout,
Jean Monlong,
Gunjan Baid,
Jonathan A. Bernstein ,
Scott Ceresnak,
Pi-Chuan Chang,
Jeffrey W. Christle,
Henry Chubb
and 22 other authors
,
Sneha D. Goenka ,
Kishwar Shafin ,
Tanner D. Jensen,
Dianna G. Fisk,
Megan E. Grove,
Elizabeth Spiteri,
Trevor Pesout,
Jean Monlong,
Gunjan Baid,
Jonathan A. Bernstein ,
Scott Ceresnak,
Pi-Chuan Chang,
Jeffrey W. Christle,
Henry Chubb
and 22 other authors
Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting
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2020
Kishwar Shafin ,
Trevor Pesout,
Ryan Lorig-Roach,
Marina Haukness,
Hugh E. Olsen,
Colleen Bosworth,
Joel Armstrong,
Kristof Tigyi,
Nicholas Maurer ,
Sergey Koren ,
Fritz J. Sedlazeck ,
Tobias Marschall ,
Simon Mayes,
Vania Costa,
Justin M. Zook
and 17 other authors
,
Trevor Pesout,
Ryan Lorig-Roach,
Marina Haukness,
Hugh E. Olsen,
Colleen Bosworth,
Joel Armstrong,
Kristof Tigyi,
Nicholas Maurer ,
Sergey Koren ,
Fritz J. Sedlazeck ,
Tobias Marschall ,
Simon Mayes,
Vania Costa,
Justin M. Zook
and 17 other authors
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
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