All papers authored by Andrew Carroll
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2024
Tao Tu 
,
Shekoofeh Azizi ,
Danny Driess ,
Mike Schaekermann ,
Mohamed Amin ,
Pi-Chuan Chang ,
Andrew Carroll ,
Charles Lau ,
Ryutaro Tanno ,
Ira Ktena ,
Anil Palepu ,
Basil Mustafa ,
Aakanksha Chowdhery ,
Yun Liu ,
Simon Kornblith
and 18 other authors
,
Shekoofeh Azizi ,
Danny Driess ,
Mike Schaekermann ,
Mohamed Amin ,
Pi-Chuan Chang ,
Andrew Carroll ,
Charles Lau ,
Ryutaro Tanno ,
Ira Ktena ,
Anil Palepu ,
Basil Mustafa ,
Aakanksha Chowdhery ,
Yun Liu ,
Simon Kornblith
and 18 other authors
Towards Generalist Biomedical AI
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2023
Alexey Kolesnikov,
Daniel Cook ,
Maria Nattestad,
Lucas Brambrink,
Brandy McNulty,
John Gorzynski ,
Sneha Goenka ,
Euan A. Ashley ,
Miten Jain ,
Karen H. Miga ,
Benedict Paten ,
Pi-Chuan C. Chang ,
Andrew Carroll ,
Kishwar Shafin
,
Maria Nattestad,
Lucas Brambrink,
Brandy McNulty,
John Gorzynski ,
Sneha Goenka ,
Euan A. Ashley ,
Miten Jain ,
Karen H. Miga ,
Benedict Paten ,
Pi-Chuan C. Chang ,
Andrew Carroll ,
Kishwar Shafin
Local read haplotagging enables accurate long-read small variant calling
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Daniel E. Cook ,
Aarti Venkat ,
Dennis Yelizarov,
Yannick Pouliot ,
Pi-Chuan Chang ,
Andrew Carroll ,
Francisco M. De La Vega
,
Aarti Venkat ,
Dennis Yelizarov,
Yannick Pouliot ,
Pi-Chuan Chang ,
Andrew Carroll ,
Francisco M. De La Vega
A deep-learning-based RNA-seq germline variant caller
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2022
John E. Gorzynski ,
Sneha D. Goenka ,
Kishwar Shafin ,
Tanner D. Jensen,
Dianna G. Fisk,
Megan E. Grove ,
Elizabeth Spiteri,
Trevor Pesout,
Jean Monlong ,
Jonathan A. Bernstein ,
Scott Ceresnak ,
Pi-Chuan Chang ,
Jeffrey W. Christle,
Henry Chubb ,
Kyla Dunn
and 13 other authors
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,
Sneha D. Goenka ,
Kishwar Shafin ,
Tanner D. Jensen,
Dianna G. Fisk,
Megan E. Grove ,
Elizabeth Spiteri,
Trevor Pesout,
Jean Monlong ,
Jonathan A. Bernstein ,
Scott Ceresnak ,
Pi-Chuan Chang ,
Jeffrey W. Christle,
Henry Chubb ,
Kyla Dunn
and 13 other authors
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Sneha D. Goenka ,
John E. Gorzynski ,
Kishwar Shafin ,
Dianna G. Fisk,
Trevor Pesout,
Tanner D. Jensen,
Jean Monlong,
Pi-Chuan Chang ,
Gunjan Baid,
Jonathan A. Bernstein ,
Jeffrey W. Christle,
Karen P. Dalton ,
Daniel R. Garalde,
Megan E. Grove ,
Joseph Guillory
and 14 other authors
,
John E. Gorzynski ,
Kishwar Shafin ,
Dianna G. Fisk,
Trevor Pesout,
Tanner D. Jensen,
Jean Monlong,
Pi-Chuan Chang ,
Gunjan Baid,
Jonathan A. Bernstein ,
Jeffrey W. Christle,
Karen P. Dalton ,
Daniel R. Garalde,
Megan E. Grove ,
Joseph Guillory
and 14 other authors
Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing
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John E. Gorzynski ,
Sneha D. Goenka ,
Kishwar Shafin ,
Tanner D. Jensen,
Dianna G. Fisk,
Megan E. Grove,
Elizabeth Spiteri,
Trevor Pesout,
Jean Monlong,
Gunjan Baid,
Jonathan A. Bernstein ,
Scott Ceresnak,
Pi-Chuan Chang,
Jeffrey W. Christle,
Henry Chubb
and 22 other authors
,
Sneha D. Goenka ,
Kishwar Shafin ,
Tanner D. Jensen,
Dianna G. Fisk,
Megan E. Grove,
Elizabeth Spiteri,
Trevor Pesout,
Jean Monlong,
Gunjan Baid,
Jonathan A. Bernstein ,
Scott Ceresnak,
Pi-Chuan Chang,
Jeffrey W. Christle,
Henry Chubb
and 22 other authors
Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting
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2021
Jouni Sirén ,
Jean Monlong ,
Xian Chang ,
Adam M. Novak ,
Jordan M. Eizenga ,
Charles Markello ,
Jonas A. Sibbesen ,
Glenn Hickey ,
Pi-Chuan Chang ,
Andrew Carroll ,
Namrata Gupta ,
Stacey Gabriel,
Thomas W. Blackwell,
Aakrosh Ratan ,
Kent D. Taylor
and 5 other authors
,
Jean Monlong ,
Xian Chang ,
Adam M. Novak ,
Jordan M. Eizenga ,
Charles Markello ,
Jonas A. Sibbesen ,
Glenn Hickey ,
Pi-Chuan Chang ,
Andrew Carroll ,
Namrata Gupta ,
Stacey Gabriel,
Thomas W. Blackwell,
Aakrosh Ratan ,
Kent D. Taylor
and 5 other authors
Pangenomics enables genotyping of known structural variants in 5202 diverse genomes
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2020
Taedong Yun ,
Helen Li ,
Pi-Chuan Chang ,
Michael F. Lin,
Andrew Carroll ,
Cory Y. McLean
,
Helen Li ,
Pi-Chuan Chang ,
Michael F. Lin,
Andrew Carroll ,
Cory Y. McLean
Accurate, scalable cohort variant calls using DeepVariant and GLnexus
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Lesley M. Chapman ,
Noah Spies ,
Patrick Pai ,
Chun Shen Lim ,
Andrew Carroll ,
Giuseppe Narzisi ,
Christopher M. Watson ,
Christos Proukakis ,
Wayne E. Clarke ,
Naoki Nariai,
Eric Dawson ,
Garan Jones ,
Daniel Blankenberg,
Christian Brueffer ,
Chunlin Xiao
and 9 other authors
,
Noah Spies ,
Patrick Pai ,
Chun Shen Lim ,
Andrew Carroll ,
Giuseppe Narzisi ,
Christopher M. Watson ,
Christos Proukakis ,
Wayne E. Clarke ,
Naoki Nariai,
Eric Dawson ,
Garan Jones ,
Daniel Blankenberg,
Christian Brueffer ,
Chunlin Xiao
and 9 other authors
A crowdsourced set of curated structural variants for the human genome
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