Researcher
Mark Diekhans
University of California, Santa Cruz
Statistics
15 papers found
All papers authored by Mark Diekhans
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2023
Arang Rhie 
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
The complete sequence of a human Y chromosome
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2022
Nicolas Altemose ,
Glennis A. Logsdon ,
Andrey V. Bzikadze ,
Pragya Sidhwani ,
Sasha A. Langley,
Gina V. Caldas,
Savannah J. Hoyt ,
Lev Uralsky ,
Fedor D. Ryabov ,
Colin J. Shew,
Michael E. G. Sauria ,
Matthew Borchers ,
Ariel Gershman ,
Alla Mikheenko,
Valery A. Shepelev
and 45 other authors
,
Glennis A. Logsdon ,
Andrey V. Bzikadze ,
Pragya Sidhwani ,
Sasha A. Langley,
Gina V. Caldas,
Savannah J. Hoyt ,
Lev Uralsky ,
Fedor D. Ryabov ,
Colin J. Shew,
Michael E. G. Sauria ,
Matthew Borchers ,
Ariel Gershman ,
Alla Mikheenko,
Valery A. Shepelev
and 45 other authors
Complete genomic and epigenetic maps of human centromeres
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Mitchell R. Vollger ,
Xavi Guitart ,
Philip C. Dishuck ,
Ludovica Mercuri ,
William T. Harvey ,
Ariel Gershman ,
Mark Diekhans ,
Arvis Sulovari ,
Katherine M. Munson ,
Alexandra P. Lewis ,
Alexandra M. Lewis,
Kendra Hoekzema ,
David Porubsky ,
Ruiyang Li ,
Sergey Nurk
and 6 other authors
,
Xavi Guitart ,
Philip C. Dishuck ,
Ludovica Mercuri ,
William T. Harvey ,
Ariel Gershman ,
Mark Diekhans ,
Arvis Sulovari ,
Katherine M. Munson ,
Alexandra P. Lewis ,
Alexandra M. Lewis,
Kendra Hoekzema ,
David Porubsky ,
Ruiyang Li ,
Sergey Nurk
and 6 other authors
Segmental duplications and their variation in a complete human genome
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Sergey Nurk ,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
The complete sequence of a human genome
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2021
Yafei Mao ,
Claudia R. Catacchio ,
LaDeana W. Hillier,
David Porubsky ,
Ruiyang Li,
Arvis Sulovari ,
Jason D. Fernandes,
Francesco Montinaro,
David S. Gordon,
Jessica M. Storer,
Marina Haukness ,
Ian T. Fiddes,
Shwetha Canchi Murali,
Philip C. Dishuck,
PingHsun Hsieh
and 24 other authors
,
Claudia R. Catacchio ,
LaDeana W. Hillier,
David Porubsky ,
Ruiyang Li,
Arvis Sulovari ,
Jason D. Fernandes,
Francesco Montinaro,
David S. Gordon,
Jessica M. Storer,
Marina Haukness ,
Ian T. Fiddes,
Shwetha Canchi Murali,
Philip C. Dishuck,
PingHsun Hsieh
and 24 other authors
A high-quality bonobo genome refines the analysis of hominid evolution
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Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow,
Arkarachai Fungtammasan,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow,
Arkarachai Fungtammasan,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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Shaohong Feng ,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Duo Xie ,
Guangji Chen ,
Chunxue Guo,
Brant C. Faircloth ,
Bent Petersen ,
Zongji Wang ,
Qi Zhou ,
Mark Diekhans ,
Wanjun Chen
and 135 other authors
,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Duo Xie ,
Guangji Chen ,
Chunxue Guo,
Brant C. Faircloth ,
Bent Petersen ,
Zongji Wang ,
Qi Zhou ,
Mark Diekhans ,
Wanjun Chen
and 135 other authors
Author Correction: Dense sampling of bird diversity increases power of comparative genomics
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2020
Wesley C. Warren ,
Mao Yafei,
R. Alan Harris ,
Marina and Fiddes Ian T. Haukness ,
Ian T. Fiddes ,
Shwetha C. Murali,
Jason and Dishuck Philip C. Fernandes ,
Philip C. Dishuck ,
Jessica M. Storer ,
Raveendran Muthuswamy,
LaDeana W. Hillier,
David Porubsky,
David Gordon ,
Mitchell R. Vollger ,
Alexandra P. Lewis
and 47 other authors
,
Mao Yafei,
R. Alan Harris ,
Marina and Fiddes Ian T. Haukness ,
Ian T. Fiddes ,
Shwetha C. Murali,
Jason and Dishuck Philip C. Fernandes ,
Philip C. Dishuck ,
Jessica M. Storer ,
Raveendran Muthuswamy,
LaDeana W. Hillier,
David Porubsky,
David Gordon ,
Mitchell R. Vollger ,
Alexandra P. Lewis
and 47 other authors
Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility
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Adam Frankish ,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
Download from doi.org
,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
Download from doi.org
Shaohong Feng ,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Bent Petersen ,
Duo Xie ,
Zongji Wang ,
Qi Zhou ,
Guangji Chen ,
Mark Diekhans ,
Chunxue Guo,
Wanjun Chen ,
Sergio Andreu-Sánchez
and 137 other authors
,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Bent Petersen ,
Duo Xie ,
Zongji Wang ,
Qi Zhou ,
Guangji Chen ,
Mark Diekhans ,
Chunxue Guo,
Wanjun Chen ,
Sergio Andreu-Sánchez
and 137 other authors
Dense sampling of bird diversity increases power of comparative genomics
Download from www.nature.com
Joel Armstrong ,
Glenn Hickey,
Mark Diekhans ,
Ian T. Fiddes,
Adam M. Novak ,
Alden Deran,
Qi Fang ,
Duo Xie ,
Shaohong Feng ,
Josefin Stiller ,
Diane Genereux,
Jeremy Johnson,
Voichita Dana Marinescu,
Jessica Alföldi,
Robert S. Harris
and 6 other authors
,
Glenn Hickey,
Mark Diekhans ,
Ian T. Fiddes,
Adam M. Novak ,
Alden Deran,
Qi Fang ,
Duo Xie ,
Shaohong Feng ,
Josefin Stiller ,
Diane Genereux,
Jeremy Johnson,
Voichita Dana Marinescu,
Jessica Alföldi,
Robert S. Harris
and 6 other authors
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
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Cristina Sisu ,
Paul Muir,
Adam Frankish ,
Ian Fiddes,
Mark Diekhans ,
David Thybert,
Duncan T. Odom ,
Paul Flicek ,
Thomas M. Keane ,
Tim Hubbard ,
Jennifer Harrow,
Mark Gerstein
,
Paul Muir,
Adam Frankish ,
Ian Fiddes,
Mark Diekhans ,
David Thybert,
Duncan T. Odom ,
Paul Flicek ,
Thomas M. Keane ,
Tim Hubbard ,
Jennifer Harrow,
Mark Gerstein
Transcriptional activity and strain-specific history of mouse pseudogenes
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2019
Charles A. Steward ,
Jolien Roovers ,
Marie-Marthe Suner ,
Jose M. Gonzalez,
Barbara Uszczynska-Ratajczak ,
Dmitri Pervouchine,
Stephen Fitzgerald,
Margarida Viola ,
Hannah Stamberger,
Fadi F. Hamdan,
Berten Ceulemans,
Patricia Leroy,
Caroline Nava,
Anne Lepine,
Electra Tapanari
and 21 other authors
Download from www.nature.com
,
Jolien Roovers ,
Marie-Marthe Suner ,
Jose M. Gonzalez,
Barbara Uszczynska-Ratajczak ,
Dmitri Pervouchine,
Stephen Fitzgerald,
Margarida Viola ,
Hannah Stamberger,
Fadi F. Hamdan,
Berten Ceulemans,
Patricia Leroy,
Caroline Nava,
Anne Lepine,
Electra Tapanari
and 21 other authors
Download from www.nature.com
2018
Jingtao Lilue ,
Anthony G. Doran,
Ian T. Fiddes,
Monica Abrudan,
Joel Armstrong,
Ruth Bennett,
William Chow,
Joanna Collins,
Stephan Collins,
Anne Czechanski,
Petr Danecek,
Mark Diekhans ,
Dirk-Dominik Dolle,
Matt Dunn,
Richard Durbin
and 44 other authors
Download from www.nature.com
,
Anthony G. Doran,
Ian T. Fiddes,
Monica Abrudan,
Joel Armstrong,
Ruth Bennett,
William Chow,
Joanna Collins,
Stephan Collins,
Anne Czechanski,
Petr Danecek,
Mark Diekhans ,
Dirk-Dominik Dolle,
Matt Dunn,
Richard Durbin
and 44 other authors
Download from www.nature.com
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