All papers authored by Tobias Marschall
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Peter Ebert ,
Jana Ebler ,
Peter A. Audano ,
Katherine M. Munson ,
Kendra Hoekzema ,
David Porubsky ,
Christine R. Beck ,
Tobias Marschall ,
Kiran Garimella ,
Evan E. Eichler
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Jana Ebler ,
Tobias Marschall
Allele detection using k-mer-based sequencing error profiles
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Jana Ebler ,
Tobias Marschall
BubbleGun: enumerating bubbles and superbubbles in genome graphs
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Jose Espejo Valle-Inclan,
Nicolle J. M. Besselink,
Ewart de Bruijn,
Daniel L. Cameron ,
Jana Ebler ,
Joachim Kutzera ,
Stef van Lieshout,
Tobias Marschall ,
Marcel Nelen,
Andy Wing Chun Pang,
Peter Priestley,
Ivo Renkens,
Margaretha G. M. Roemer ,
Markus J. van Roosmalen
and 5 other authors
A multi-platform reference for somatic structural variation detection
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Peter Ebert ,
Wayne E. Clarke,
Tobias Rausch ,
Peter A. Audano,
Torsten Houwaart ,
Yafei Mao ,
Jan O. Korbel ,
Evan E. Eichler ,
Michael C. Zody ,
Alexander T. Dilthey,
Tobias Marschall
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Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
The complete sequence of a human genome
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Ashley D. Sanders ,
Jan O. Korbel,
Tobias Marschall ,
Peter Ebert
ASHLEYS: automated quality control for single-cell Strand-seq data
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Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
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Tobias Marschall
MBG: Minimizer-based Sparse de Bruijn Graph Construction
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Arkarachai Fungtammasan,
Andrew Carroll,
Mike Chou,
Anthony Schmitt,
Xiang Zhou,
Stephen Mac,
Paul Peluso,
Emily Hatas,
Jay Ghurye,
Jared Maguire,
Medhat Mahmoud ,
Haoyu Cheng,
David Heller ,
Justin M. Zook
and 7 other authors
Chromosome-scale, haplotype-resolved assembly of human genomes
Download from www.nature.com
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Tobias Marschall
GraphAligner: rapid and versatile sequence-to-graph alignment
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Sergey Aganezov ,
Melanie Kirsche ,
Samantha Zarate,
Michael C. Schatz,
Chunlin Xiao ,
William J. Rowell ,
Charles Markello ,
Jesse Farek
and 11 other authors
A diploid assembly-based benchmark for variants in the major histocompatibility complex
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Wolfram Höps,
PingHsun Hsieh ,
Arvis Sulovari ,
Ruiyang Li,
Ludovica Mercuri,
Melanie Sorensen,
Shwetha C. Murali,
David Gordon,
Stuart Cantsilieris,
Alex A. Pollen,
Mario Ventura ,
Francesca Antonacci ,
Tobias Marschall
and 2 other authors
Recurrent inversion toggling and great ape genome evolution
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Trevor Pesout,
Ryan Lorig-Roach,
Marina Haukness,
Hugh E. Olsen,
Colleen Bosworth,
Joel Armstrong,
Kristof Tigyi,
Nicholas Maurer ,
Sergey Koren ,
Fritz J. Sedlazeck ,
Tobias Marschall ,
Simon Mayes,
Vania Costa,
Justin M. Zook
and 17 other authors
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
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Sascha Meiers,
Maryam Ghareghani,
David Porubsky,
Hyobin Jeong,
M. Alexandra C. C. van Vliet,
Tobias Rausch ,
Paulina Richter-Pechańska ,
Joachim B. Kunz,
Silvia Jenni,
Davide Bolognini ,
Gabriel M. C. Longo,
Benjamin Raeder ,
Venla Kinanen,
Jürgen Zimmermann
and 8 other authors
Single-cell analysis of structural variations and complex rearrangements with tri-channel processing
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Paul Peluso,
William J. Rowell ,
Pi-Chuan Chang ,
Richard J. Hall,
Gregory T. Concepcion ,
Jana Ebler,
Arkarachai Fungtammasan,
Alexey Kolesnikov,
Nathan D. Olson ,
Armin Töpfer,
Michael Alonge,
Medhat Mahmoud ,
Yufeng Qian,
Chen-Shan Chin
and 13 other authors
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Trevor Pesout,
Tobias Marschall ,
Benedict Paten
Haplotype-aware diplotyping from noisy long reads
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Chaisson Mj,
Eugene J. Gardner ,
Ryan L. Collins,
Xuefang Zhao ,
Sanders Ad,
Robert E. Handsaker ,
Ankit Malhotra,
Zev N. Kronenberg,
Xiangmeng Kong,
Fereydoun Hormozdiari,
Dillon Lee
and 87 other authors
Multi-platform discovery of haplotype-resolved structural variation in human genomes
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Ewart de Bruijn,
Jeroen de Ridder,
van Roosmalen Mj,
Ivo Renkens,
Marleen M. Nieboer,
Sjors Middelkamp,
Ligt,
Giulia Pregno,
Daniela Giachino ,
Jose Espejo Valle-Inclan ,
Giorgia Mandrile
and 8 other authors
Mapping And Phasing Of Structural Variation In Patient Genomes Using Nanopore Sequencing
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Tobias Marschall
Read-Based Phasing of Related Individuals
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