Mike L. Smith, Andrzej K. Oleś, Wolfgang Huber

Authoring Bioconductor workflows with BiocWorkflowTools

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Xiaofei Zhang, Arne H. Smits, Gabrielle Ba van Tilburg, Huib Ovaa, Wolfgang Huber, Michiel Vermeulen

Proteome-wide identification of ubiquitin interactions using UbIA-MS

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Wolfgang Huber

A clash of cultures in discussions of the P value

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Nikolaos Ignatiadis, Bernd Klaus, Judith B. Zaugg, Wolfgang Huber

Data-driven hypothesis weighting increases detection power in genome-scale multiple testing

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Benedikt M. Beckmann, Rastislav Horos, Bernd Fischer, Alfredo Castello, Katrin Eichelbaum, Anne-Marie Alleaume, Thomas Schwarzl, Tomavz Curk, Sophia Foehr, Wolfgang Huber, Jeroen Krijgsveld, Matthias W. Hentze

The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs

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Friedrich B. M. Reinhard, Dirk Eberhard, Thilo Werner, Holger Franken, Dorothee Childs, Carola Doce, Maria Fälth Savitski, Wolfgang Huber, Marcus Bantscheff, Mikhail M. Savitski, Gerard Drewes

Thermal proteome profiling monitors ligand interactions with cellular membrane proteins

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Giorgia Guglielmi, Joseph D. Barry, Wolfgang Huber, Stefano De Renzis

An Optogenetic Method to Modulate Cell Contractility during Tissue Morphogenesis

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Michael I. Love, Simon Anders, Vladislav Kim, Wolfgang Huber

RNA-Seq workflow: gene-level exploratory analysis and differential expression

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Holger Franken, Toby Mathieson, Dorothee Childs, Gavain M. A. Sweetman, Thilo Werner, Ina Tögel, Carola Doce, Stephan Gade, Marcus Bantscheff, Gerard Drewes, Friedrich B. M. Reinhard, Wolfgang Huber, Mikhail M. Savitski

Thermal proteome profiling for unbiased identification of direct and indirect drug targets using multiplexed quantitative mass spectrometry

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Christian Hauer, Tomaz Curk, Simon Anders, Thomas Schwarzl, Anne-Marie Alleaume, Jana Sieber, Ina Hollerer, Madhuri Bhuvanagiri, Wolfgang Huber, Matthias W. Hentze, Andreas E. Kulozik

Improved binding site assignment by high-resolution mapping of RNA–protein interactions using iCLIP

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Philip Brennecke, Alejandro Reyes, Sheena Pinto, Kristin Rattay, Michelle Nguyen, Rita Küchler, Wolfgang Huber, Bruno Kyewski, Lars M. Steinmetz

Single-cell transcriptome analysis reveals coordinated ectopic gene-expression patterns in medullary thymic epithelial cells

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Fabian Grubert, Judith B. Zaugg, Maya Kasowski, Oana Ursu, Damek V. Spacek, Alicia R. Martin, Peyton Greenside, Rohith Srivas, Doug H. Phanstiel, Aleksandra Pekowska, Nastaran Heidari, Ghia Euskirchen, Wolfgang Huber, Jonathan K. Pritchard, Carlos D. Bustamante and 3 other authors

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

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Wolfgang Huber, Vincent Carey, Sean Davis, Kasper Daniel Hansen, Martin Morgan

The Bioconductor channel in F1000Research

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Julian S. Gehring, Bernd Fischer, Michael Lawrence, Wolfgang Huber

SomaticSignatures: inferring mutational signatures from single-nucleotide variants: Fig. 1.

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S. Dietrich, J. Hullein, S. C.-W. Lee, B. Hutter, D. Gonzalez, S. Jayne, M. J. S. Dyer, M. Ole, M. Else, X. Liu, M. S abicki, B. Wu, X. Troussard, J. Durig, M. Andrulis and 15 other authors

Recurrent CDKN1B (p27) mutations in hairy cell leukemia

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Felix A. Klein, Tibor Pakozdi, Simon Anders, Yad Ghavi-Helm, Eileen E. M. Furlong, Wolfgang Huber

FourCSeq: Analysis of 4C sequencing data

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Lars Velten, Simon Anders, Aleksandra Pekowska, Aino I. Järvelin, Wolfgang Huber, Vicent Pelechano, Lars M. Steinmetz

Single-cell polyadenylation site mapping reveals 3′ isoform choice variability

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Bernd Fischer, Thomas Sandmann, Thomas Horn, Maximilian Billmann, Varun Chaudhary, Wolfgang Huber, Michael Boutros

A map of directional genetic interactions in a metazoan cell

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Wolfgang Huber, Vincent J. Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S. Carvalho, Hector Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke, Raphael Gottardo, Florian Hahne, Kasper D. Hansen, Rafael A. Irizarry, Michael Lawrence and 11 other authors

Orchestrating high-throughput genomic analysis with Bioconductor

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Taro Tsujimura, Felix A. Klein, Katja Langenfeld, Juliane Glaser, Wolfgang Huber, François Spitz

A Discrete Transition Zone Organizes the Topological and Regulatory Autonomy of the Adjacent Tfap2c and Bmp7 Genes

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