69 papers found
Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification: Supplementary Figures
Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets
Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation
scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
Normalizing single-cell RNA sequencing data: challenges and opportunities
Testing for differential abundance in mass cytometry data
Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition
Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression
Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data
Resolving early mesoderm diversification through single-cell expression profiling
HDTD: Analyzing multi-tissue gene expression data.
Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States.
Pooling across cells to normalize single-cell RNA sequencing data with many zero counts
Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos
Classification of low quality cells from single-cell RNA-seq data
Beyond comparisons of means: understanding changes in gene expression at the single-cell level
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq
Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression
Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation
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