Researcher
Yasset Perez-Riverol
European Bioinformatics Institute
Statistics
59 papers found
All papers authored by Yasset Perez-Riverol
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Annalisa Buniello ,
Catherine Brooksbank,
Kim T. Gurwitz,
Matthew Hall,
Matthew Hartley,
David G. Hulcoop,
Andrew R. Leach,
Diana Marques ,
Maria Martin,
Aziz Mithani,
Ellen M. McDonagh ,
Euphemia Mutasa-Gottgens,
David Ochoa ,
Yasset Perez-Riverol
and 6 other authors
EMBL’s European Bioinformatics Institute (EMBL-EBI) in 2023
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,
Yasset Perez-Riverol ,
Kris Gevaert,
Juan Antonio Vizcaíno ,
Lennart Martens
lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation
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,
Johannes Griss ,
Eric W. Deutsch ,
Timo Sachsenberg ,
Lev I. Levitsky ,
Mark V. Ivanov ,
Julia A. Bubis ,
Ralf Gabriels ,
Henry Webel,
Aniel Sanchez,
Mingze Bai,
Lukas Käll,
Yasset Perez-Riverol
A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics
Download from pubs.acs.org
,
Eric W. Deutsch ,
Pierre-Alain Binz,
Ryan T. Fellers,
Anthony J. Cesnik,
Joshua A. Klein,
Tim Van Den Bossche ,
Ralf Gabriels ,
Arshika Yalavarthi,
Yasset Perez-Riverol ,
Jeremy Carver,
Wout Bittremieux ,
Shin Kawano,
Benjamin Pullman,
Nuno Bandeira
and 3 other authors
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,
Enrique Audain,
Yafeng Zhu,
Julianus Pfeuffer,
Timo Sachsenberg,
Janne Lehtiö,
Rui M. Branca,
Yasset Perez-Riverol
Download from academic.oup.com
,
Yasset Perez-Riverol ,
Nicole Woldmar,
Yonghyo Kim ,
Henriett Oskolas,
Lazaro Betancourt,
Jeovanis Gil Valdés,
K. Barbara Sahlin,
K. Barbara Sahlin ,
Luciana Pizzatti ,
A. Marcell Szasz,
A. Marcell Szasz
and 9 other authors
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,
Jingwen Bai,
Chakradhar Bandla,
David García-Seisdedos,
Suresh Hewapathirana,
Selvakumar Kamatchinathan,
Deepti J. Kundu,
Ananth Prakash ,
Anika Frericks-Zipper,
Martin Eisenacher,
Mathias Walzer,
Shengbo Wang,
Alvis Brazma,
Juan Antonio Vizcaíno
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences
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,
Julianus Pfeuffer,
Elizaveta M. Solovyeva ,
Jingwen Deng,
Pablo Moreno ,
Selvakumar Kamatchinathan,
Deepti Jaiswal Kundu,
Nancy George ,
Silvie Fexova,
Björn Grüning ,
Melanie Christine Föll,
Johannes Griss ,
Marc Vaudel ,
Enrique Audain
and 25 other authors
A proteomics sample metadata representation for multiomics integration and big data analysis
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,
Woodrow D. Benson,
Felix Berger ,
Anna Wilsdon ,
Ingo Daehnert ,
J. W. Belmont,
Jeroen Breckpot,
Koenraad Devriendt ,
D. W. Benson,
Jose M. G. Izarzugaza,
Sven Dittrich ,
Piers Ef Daubeney ,
Tomas W. Fitzgerald ,
Vidu Garg ,
Karl Hackmann
and 37 other authors
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,
Hamid Hamzeiy ,
Favio Salinas Soto,
Daniel Itzhak,
Frank McCarthy ,
Christoph Wichmann,
Martin Steger,
Uli Ohmayer,
Ute Distler ,
Stephanie Kaspar-Schoenefeld,
Nikita Prianichnikov,
Şule Yılmaz,
Jan Daniel Rudolph ,
Stefan Tenzer ,
Yasset Perez-Riverol
and 3 other authors
MaxDIA enables library-based and library-free data-independent acquisition proteomics
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Yasset Perez-Riverol ,
Jeremy Carver,
Shin Kawano ,
Luis Mendoza,
Tim Van Den Bossche ,
Ralf Gabriels ,
Pierre-Alain Binz ,
Benjamin Pullman ,
Zhi Sun,
Jim Shofstahl,
Wout Bittremieux ,
Tytus D. Mak,
Joshua Klein,
Yunping Zhu
and 3 other authors
Universal Spectrum Identifier for mass spectra
Download from www.nature.com
,
Ni Huang,
Jonathan R. Manning ,
Suhaib Mohammed,
Andrey Solovyev,
Krzysztof Polanski ,
Wendi Bacon,
Ruben Chazarra,
Carlos Talavera-López ,
Maria A. Doyle,
Guilhem Marnier,
Björn Grüning ,
Helena Rasche ,
Nancy George ,
Silvie Korena Fexova
and 8 other authors
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis
Download from www.nature.com
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Jeremy Carver,
Cristina Chiva,
Manuel Tzouros ,
Ting Huang,
Tsung-Heng Tsai ,
Benjamin Pullman ,
Oliver M. Bernhardt,
Ruth Hüttenhain ,
Guo Ci Teo ,
Yasset Perez-Riverol ,
Jan Muntel ,
Maik Müller ,
Sandra Goetze ,
Maria Pavlou
and 8 other authors
MassIVE.quant: a community resource of quantitative mass spectrometry–based proteomics datasets
Download from www.nature.com
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Patroklos Samaras,
Viktoria Dorfer ,
Christian Panse ,
Tobias Kockmann ,
Leon Bichmann ,
Bart van Puyvelde,
Yasset Perez-Riverol ,
Eric W. Deutsch ,
Bernhard Kuster ,
Mathias Wilhelm
Universal Spectrum Explorer: A standalone (web-)application for cross-resource spectrum comparison
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Shuichi Kawashima,
Gos Micklem ,
Shin Kawano ,
Jin-Dong Kim,
Simon Kocbek,
Shinobu Okamoto,
Yue Wang,
Hongyan Wu,
Atsuko Yamaguchi ,
Yasunori Yamamoto,
Erick Antezana ,
Kiyoko F. Aoki-Kinoshita,
Kazuharu Arakawa,
Masaki Banno
and 61 other authors
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Luca Pireddu ,
Pierrick Roger ,
Nuwan Goonasekera,
Enis Afgan ,
Marius van den Beek ,
Sijin He ,
Anders Larsson ,
Christoph Ruttkies ,
Daniel Schober ,
David Johnson ,
Philippe Rocca-Serra ,
Ralf Jm M. Weber ,
Bjoern Gruening ,
Reza M. Salek
and 5 other authors
Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud
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Vivian Huerta,
Dayron Martín,
Sucel Palomares,
Alexis Yero ,
Dianne Pupo,
Sebastien Gallien,
Alejandro M. Martín,
Yasset Pérez-Riverol ,
Mónica Sarría,
Osmany Guirola ,
Glay Chinea,
Bruno Domon,
Luis Javier González
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Mateusz Kuzak,
Monther Alhamdoosh ,
Michelle Barker ,
Bérénice Batut ,
Mikael Borg,
Salvador Capella-Gutierrez ,
Neil Chue Hong,
Martin Cook,
Manuel Corpas ,
Madison Flannery,
Leyla Garcia ,
Josep L.-L. Gelpí,
Simon Gladman,
Carole Goble
and 34 other authors
Four simple recommendations to encourage best practices in research software
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,
Max Kuhn,
Max Kun,
Juan Antonio Vizcaino,
Marc-Phillip Hitz ,
Enrique Audain
Accurate And Fast Feature Selection Workflow For High-Dimensional Omics Data
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