Papers authored by Erich Jarvis
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2024
Yury V. Bukhman 
,
Susanne Meyer,
Li-Fang Chu ,
Linelle Abueg,
Jessica Antosiewicz-Bourget,
Jennifer Balacco,
Michael Brecht ,
Erica Dinatale ,
Olivier Fedrigo ,
Giulio Formenti ,
Arkarachai Fungtammasan,
Swagarika Jaharlal Giri,
Michael Hiller ,
Kerstin Howe,
Daisuke Kihara
and 11 other authors
,
Susanne Meyer,
Li-Fang Chu ,
Linelle Abueg,
Jessica Antosiewicz-Bourget,
Jennifer Balacco,
Michael Brecht ,
Erica Dinatale ,
Olivier Fedrigo ,
Giulio Formenti ,
Arkarachai Fungtammasan,
Swagarika Jaharlal Giri,
Michael Hiller ,
Kerstin Howe,
Daisuke Kihara
and 11 other authors
Chromosome level genome assembly of the Etruscan shrew Suncus etruscus
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Delphine Larivière ,
Linelle Abueg,
Nadolina Brajuka,
Cristóbal Gallardo-Alba,
Bjorn Grüning ,
Byung June Ko,
Alex Ostrovsky,
Marc Palmada-Flores ,
Brandon D. Pickett ,
Keon Rabbani ,
Agostinho Antunes ,
Jennifer R. Balacco,
Mark J. P. Chaisson ,
Haoyu Cheng,
Joanna Collins
and 26 other authors
,
Linelle Abueg,
Nadolina Brajuka,
Cristóbal Gallardo-Alba,
Bjorn Grüning ,
Byung June Ko,
Alex Ostrovsky,
Marc Palmada-Flores ,
Brandon D. Pickett ,
Keon Rabbani ,
Agostinho Antunes ,
Jennifer R. Balacco,
Mark J. P. Chaisson ,
Haoyu Cheng,
Joanna Collins
and 26 other authors
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
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Dorothy Nevé Baker ,
Linelle Abueg ,
Merly Escalona ,
Katherine A. Farquharson ,
Janet M. Lanyon ,
Diana Le Duc ,
Torsten Schöneberg ,
Dominic Absolon ,
Ying Sims ,
Olivier Fedrigo ,
Erich D. Jarvis ,
Katherine Belov ,
Carolyn J. Hogg ,
Beth Shapiro
,
Linelle Abueg ,
Merly Escalona ,
Katherine A. Farquharson ,
Janet M. Lanyon ,
Diana Le Duc ,
Torsten Schöneberg ,
Dominic Absolon ,
Ying Sims ,
Olivier Fedrigo ,
Erich D. Jarvis ,
Katherine Belov ,
Carolyn J. Hogg ,
Beth Shapiro
A chromosome-level genome assembly for the dugong (Dugong dugon)
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2023
Young Ho Lee ,
Linelle Abueg,
Jin-Koo Kim,
Young Wook Kim,
Olivier Fedrigo,
Jennifer Balacco,
Giulio Formenti ,
Kerstin Howe,
Alan Tracey,
Jonathan Wood ,
Françoise Thibaud-Nissen ,
Bo Hye Nam,
Eun Soo No,
Hye Ran Kim,
Chul Lee
and 2 other authors
,
Linelle Abueg,
Jin-Koo Kim,
Young Wook Kim,
Olivier Fedrigo,
Jennifer Balacco,
Giulio Formenti ,
Kerstin Howe,
Alan Tracey,
Jonathan Wood ,
Françoise Thibaud-Nissen ,
Bo Hye Nam,
Eun Soo No,
Hye Ran Kim,
Chul Lee
and 2 other authors
Chromosome-level genome assembly of chub mackerel (Scomber japonicus) from the Indo-Pacific Ocean
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Maëva Gabrielli ,
Andrea Benazzo ,
Roberto Biello ,
Lorena Ancona ,
Silvia Fuselli ,
Alessio Iannucci ,
Jennifer Balacco ,
Jacqueline Mountcastle ,
Alan Tracey ,
Gentile Francesco Ficetola ,
Daniele Salvi ,
Marco Sollitto ,
Olivier Fedrigo ,
Giulio Formenti ,
Erich D. Jarvis
and 4 other authors
,
Andrea Benazzo ,
Roberto Biello ,
Lorena Ancona ,
Silvia Fuselli ,
Alessio Iannucci ,
Jennifer Balacco ,
Jacqueline Mountcastle ,
Alan Tracey ,
Gentile Francesco Ficetola ,
Daniele Salvi ,
Marco Sollitto ,
Olivier Fedrigo ,
Giulio Formenti ,
Erich D. Jarvis
and 4 other authors
A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei
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Blair P. Bentley ,
Tomás Carrasco-Valenzuela ,
Elisa K. S. Ramos ,
Harvinder Pawar ,
Larissa Souza Arantes,
Alana Alexander ,
Shreya M. Banerjee ,
Patrick Masterson,
Martin Kuhlwilm,
Martin Pippel ,
Jacquelyn Mountcastle,
Bettina Haase,
Marcela Uliano-Silva,
Giulio Formenti,
Kerstin Howe
and 32 other authors
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,
Tomás Carrasco-Valenzuela ,
Elisa K. S. Ramos ,
Harvinder Pawar ,
Larissa Souza Arantes,
Alana Alexander ,
Shreya M. Banerjee ,
Patrick Masterson,
Martin Kuhlwilm,
Martin Pippel ,
Jacquelyn Mountcastle,
Bettina Haase,
Marcela Uliano-Silva,
Giulio Formenti,
Kerstin Howe
and 32 other authors
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2022
Sergey Nurk ,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
The complete sequence of a human genome
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Simon A. Hardwick,
Wen Hu ,
Anoushka Joglekar ,
Li Fan,
Paul G. Collier,
Careen Foord,
Jennifer Balacco,
Samantha Lanjewar ,
Maureen McGuirk Sampson ,
Frank Koopmans ,
Andrey D. Prjibelski,
Alla Mikheenko,
Natan Belchikov,
Julien Jarroux ,
Anne Bergstrom Lucas
and 15 other authors
,
Anoushka Joglekar ,
Li Fan,
Paul G. Collier,
Careen Foord,
Jennifer Balacco,
Samantha Lanjewar ,
Maureen McGuirk Sampson ,
Frank Koopmans ,
Andrey D. Prjibelski,
Alla Mikheenko,
Natan Belchikov,
Julien Jarroux ,
Anne Bergstrom Lucas
and 15 other authors
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
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Marc Palmada-Flores ,
Joseph D. Orkin ,
Bettina Haase ,
Jacquelyn Mountcastle ,
Mads F. Bertelsen ,
Olivier Fedrigo ,
Lukas F. K. Kuderna ,
Erich D. Jarvis ,
Tomas Marques-Bonet
,
Joseph D. Orkin ,
Bettina Haase ,
Jacquelyn Mountcastle ,
Mads F. Bertelsen ,
Olivier Fedrigo ,
Lukas F. K. Kuderna ,
Erich D. Jarvis ,
Tomas Marques-Bonet
A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)
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Hollis A. Dahn ,
Jacquelyn Mountcastle ,
Jennifer Balacco ,
Sylke Winkler ,
Iliana Bista ,
Anthony D. Schmitt,
Olga Vinnere Pettersson ,
Giulio Formenti ,
Karen Oliver,
Michelle Smith ,
Wenhua Tan ,
Anne Kraus,
Stephen Mac,
Lisa M. Komoroske ,
Tanya Lama
and 7 other authors
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,
Jacquelyn Mountcastle ,
Jennifer Balacco ,
Sylke Winkler ,
Iliana Bista ,
Anthony D. Schmitt,
Olga Vinnere Pettersson ,
Giulio Formenti ,
Karen Oliver,
Michelle Smith ,
Wenhua Tan ,
Anne Kraus,
Stephen Mac,
Lisa M. Komoroske ,
Tanya Lama
and 7 other authors
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2021
Ralf C. Mueller ,
Mueller Rc,
Patrik Ellström ,
Kerstin Howe ,
Marcela Uliano-Silva ,
Richard I. Kuo ,
Kuo Ri,
Katarzyna Miedzinska ,
Amanda Warr ,
Olivier Fedrigo ,
Bettina Haase ,
Jacquelyn Mountcastle ,
William Chow ,
Josef D. Järhult ,
James Torrance
and 8 other authors
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,
Mueller Rc,
Patrik Ellström ,
Kerstin Howe ,
Marcela Uliano-Silva ,
Richard I. Kuo ,
Kuo Ri,
Katarzyna Miedzinska ,
Amanda Warr ,
Olivier Fedrigo ,
Bettina Haase ,
Jacquelyn Mountcastle ,
William Chow ,
Josef D. Järhult ,
James Torrance
and 8 other authors
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Chentao Yang,
Yang Zhou ,
Stephanie Marcus,
Giulio Formenti ,
Lucie A. Bergeron,
Zhenzhen Song,
Xupeng Bi,
Juraj Bergman ,
Marjolaine Marie C. Rousselle,
Chengran Zhou ,
Long Zhou,
Yuan Deng,
Miaoquan Fang,
Duo Xie ,
Yuanzhen Zhu
and 18 other authors
,
Stephanie Marcus,
Giulio Formenti ,
Lucie A. Bergeron,
Zhenzhen Song,
Xupeng Bi,
Juraj Bergman ,
Marjolaine Marie C. Rousselle,
Chengran Zhou ,
Long Zhou,
Yuan Deng,
Miaoquan Fang,
Duo Xie ,
Yuanzhen Zhu
and 18 other authors
Evolutionary and biomedical insights from a marmoset diploid genome assembly
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Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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Shaohong Feng ,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Duo Xie ,
Guangji Chen ,
Chunxue Guo,
Brant C. Faircloth ,
Bent Petersen ,
Zongji Wang ,
Qi Zhou ,
Mark Diekhans ,
Wanjun Chen
and 135 other authors
,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Duo Xie ,
Guangji Chen ,
Chunxue Guo,
Brant C. Faircloth ,
Bent Petersen ,
Zongji Wang ,
Qi Zhou ,
Mark Diekhans ,
Wanjun Chen
and 135 other authors
Author Correction: Dense sampling of bird diversity increases power of comparative genomics
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Yang Zhou ,
Linda Shearwin-Whyatt ,
Jing Li,
Zhenzhen Song,
Takashi Hayakawa ,
David Stevens,
Jane C. Fenelon ,
Emma Peel ,
Yuanyuan Cheng ,
Filip Pajpach,
Natasha Bradley,
Hikoyu Suzuki,
Masato Nikaido,
Joana Damas,
Tasman Daish
and 27 other authors
,
Linda Shearwin-Whyatt ,
Jing Li,
Zhenzhen Song,
Takashi Hayakawa ,
David Stevens,
Jane C. Fenelon ,
Emma Peel ,
Yuanyuan Cheng ,
Filip Pajpach,
Natasha Bradley,
Hikoyu Suzuki,
Masato Nikaido,
Joana Damas,
Tasman Daish
and 27 other authors
Platypus and echidna genomes reveal mammalian biology and evolution
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Jing Li ,
Jilin Zhang ,
Jing Liu,
Yang Zhou ,
Cheng Cai,
Luohao Xu ,
Xuelei Dai,
Shaohong Feng,
Chunxue Guo,
Jinpeng Rao ,
Kai Wei,
Erich D. Jarvis ,
Yu Jiang,
Zhengkui Zhou,
Guojie Zhang
and 1 other authors
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,
Jilin Zhang ,
Jing Liu,
Yang Zhou ,
Cheng Cai,
Luohao Xu ,
Xuelei Dai,
Shaohong Feng,
Chunxue Guo,
Jinpeng Rao ,
Kai Wei,
Erich D. Jarvis ,
Yu Jiang,
Zhengkui Zhou,
Guojie Zhang
and 1 other authors
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2020
Shaohong Feng ,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Duo Xie ,
Guangji Chen ,
Bent Petersen ,
Chunxue Guo,
Zongji Wang ,
Brant C. Faircloth ,
Qi Zhou ,
Mark Diekhans ,
Wanjun Chen
and 137 other authors
,
Josefin Stiller ,
Yuan Deng,
Joel Armstrong ,
Qi Fang ,
Andrew Hart Reeve ,
Duo Xie ,
Guangji Chen ,
Bent Petersen ,
Chunxue Guo,
Zongji Wang ,
Brant C. Faircloth ,
Qi Zhou ,
Mark Diekhans ,
Wanjun Chen
and 137 other authors
Dense sampling of bird diversity increases power of comparative genomics
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Phillip A. Morin ,
Frederick I. Archer ,
Catherine D. Avila,
Jennifer R. Balacco ,
Yury V. Bukhman ,
William Chow ,
Olivier Fedrigo ,
Giulio Formenti ,
Julie A. Fronczek,
Arkarachai Fungtammasan ,
Frances M. D. Gulland ,
Bettina Haase ,
Mads Peter Heide‐Jorgensen,
Mads Peter Heide‐Jorgensen ,
Marlys L. Houck
and 20 other authors
,
Frederick I. Archer ,
Catherine D. Avila,
Jennifer R. Balacco ,
Yury V. Bukhman ,
William Chow ,
Olivier Fedrigo ,
Giulio Formenti ,
Julie A. Fronczek,
Arkarachai Fungtammasan ,
Frances M. D. Gulland ,
Bettina Haase ,
Mads Peter Heide‐Jorgensen,
Mads Peter Heide‐Jorgensen ,
Marlys L. Houck
and 20 other authors
Reference genome and demographic history of the most endangered marine mammal, the vaquita
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