All papers authored by Fergal Martin
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2024
Daqi Yu,
Yandong Ren 
,
Masahiro Uesaka ,
Alan J. S. Beavan,
Matthieu Muffato,
Jieyu Shen ,
Yongxin Li ,
Iori Sato ,
Wenting Wan,
James W. Clark ,
Joseph N. Keating ,
Emily M. Carlisle,
Richard P. Dearden ,
Sam Giles ,
Emma Randle
and 29 other authors
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,
Masahiro Uesaka ,
Alan J. S. Beavan,
Matthieu Muffato,
Jieyu Shen ,
Yongxin Li ,
Iori Sato ,
Wenting Wan,
James W. Clark ,
Joseph N. Keating ,
Emily M. Carlisle,
Richard P. Dearden ,
Sam Giles ,
Emma Randle
and 29 other authors
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2023
Peter W. Harrison ,
M. Ridwan Amode,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
Matthieu Barba,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks,
Shashank Budhanuru Ramaraju
and 83 other authors
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,
M. Ridwan Amode,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
Matthieu Barba,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks,
Shashank Budhanuru Ramaraju
and 83 other authors
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Arang Rhie ,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
The complete sequence of a human Y chromosome
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Wen-Wei Liao ,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng ,
Justin Chu,
Vincenza Colonna
and 104 other authors
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng ,
Justin Chu,
Vincenza Colonna
and 104 other authors
A draft human pangenome reference
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2022
Adam Frankish ,
Sílvia Carbonell-Sala,
Mark Diekhans ,
Irwin Jungreis ,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Carme Arnan ,
If Barnes,
Abhimanyu Banerjee,
Ruth Bennett,
Andrew Berry,
Alexandra Bignell,
Carles Boix
and 47 other authors
,
Sílvia Carbonell-Sala,
Mark Diekhans ,
Irwin Jungreis ,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Carme Arnan ,
If Barnes,
Abhimanyu Banerjee,
Ruth Bennett,
Andrew Berry,
Alexandra Bignell,
Carles Boix
and 47 other authors
GENCODE: reference annotation for the human and mouse genomes in 2023
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Fergal J. Martin ,
M. Ridwan Amode,
Alisha Aneja,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Alexandra Bignell,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks
and 81 other authors
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,
M. Ridwan Amode,
Alisha Aneja,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Alexandra Bignell,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks
and 81 other authors
Download from academic.oup.com
Maximilian R. Stammnitz ,
Kevin Gori ,
Young Mi Kwon ,
Ed Harry ,
Fergal J. Martin ,
Konstantinos Billis ,
Yuanyuan Cheng ,
Adrian Baez-Ortega ,
William Chow ,
Sebastien Comte ,
Hannes Eggertsson ,
Samantha Fox ,
Rodrigo Hamede ,
Menna E. Jones ,
Billie Lazenby
and 10 other authors
,
Kevin Gori ,
Young Mi Kwon ,
Ed Harry ,
Fergal J. Martin ,
Konstantinos Billis ,
Yuanyuan Cheng ,
Adrian Baez-Ortega ,
William Chow ,
Sebastien Comte ,
Hannes Eggertsson ,
Samantha Fox ,
Rodrigo Hamede ,
Menna E. Jones ,
Billie Lazenby
and 10 other authors
The evolution of two transmissible cancers in Tasmanian devils
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2021
Fiona Cunningham ,
James E. Allen,
Jamie Allen ,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean ,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Alexandra Bignell,
Konstantinos Billis ,
Sanjay Boddu
and 80 other authors
Download from doi.org
,
James E. Allen,
Jamie Allen ,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean ,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Alexandra Bignell,
Konstantinos Billis ,
Sanjay Boddu
and 80 other authors
Download from doi.org
Nishadi H. De Silva ,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data
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Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas ,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Gregory L. Gedman,
Mark Chaisson,
Lindsey J. Cantin,
Chul Lee,
Francoise Thibaud-Nissen ,
Leanne Haggerty
and 114 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas ,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Gregory L. Gedman,
Mark Chaisson,
Lindsey J. Cantin,
Chul Lee,
Francoise Thibaud-Nissen ,
Leanne Haggerty
and 114 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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2020
Adam Frankish ,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
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,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
Download from academic.oup.com
Amanda Warr ,
Nabeel Affara,
Bronwen Aken ,
Hamid Beiki ,
Derek M. Bickhart ,
Konstantinos Billis ,
William Chow ,
Lel Eory ,
Heather A. Finlayson,
Paul Flicek ,
Carlos G. Girón ,
Darren K. Griffin ,
Richard Hall ,
Greg Hannum,
Thibaut Hourlier
and 25 other authors
,
Nabeel Affara,
Bronwen Aken ,
Hamid Beiki ,
Derek M. Bickhart ,
Konstantinos Billis ,
William Chow ,
Lel Eory ,
Heather A. Finlayson,
Paul Flicek ,
Carlos G. Girón ,
Darren K. Griffin ,
Richard Hall ,
Greg Hannum,
Thibaut Hourlier
and 25 other authors
An improved pig reference genome sequence to enable pig genetics and genomics research
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2018
Adam Frankish ,
Mark Diekhans,
Anne-Maud Ferreira,
Rory Johnson,
Irwin Jungreis ,
Jane Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Silvia Carbonell Sala,
Jacqueline Chrast
and 40 other authors
,
Mark Diekhans,
Anne-Maud Ferreira,
Rory Johnson,
Irwin Jungreis ,
Jane Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Silvia Carbonell Sala,
Jacqueline Chrast
and 40 other authors
GENCODE reference annotation for the human and mouse genomes
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