All papers authored by Paul Flicek
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2023
Wen-Wei Liao 
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng,
Justin Chu,
Vincenza Colonna
and 104 other authors
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng,
Justin Chu,
Vincenza Colonna
and 104 other authors
A draft human pangenome reference
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2021
Fiona Cunningham ,
James E. Allen,
Jamie Allen,
Jorge Alvarez-Jarreta,
M Ridwan Amode,
Irina M Armean ,
Olanrewaju Austine-Orimoloye,
Andrey G Azov,
If Barnes,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Alexandra Bignell,
Konstantinos Billis ,
Sanjay Boddu
and 80 other authors
Download from doi.org
,
James E. Allen,
Jamie Allen,
Jorge Alvarez-Jarreta,
M Ridwan Amode,
Irina M Armean ,
Olanrewaju Austine-Orimoloye,
Andrey G Azov,
If Barnes,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Alexandra Bignell,
Konstantinos Billis ,
Sanjay Boddu
and 80 other authors
Download from doi.org
Andrew D. Yates ,
James Allen,
Ridwan M. Amode,
Andrey G. Azov,
Matthieu Barba,
Andrés Becerra,
Jyothish Bhai,
Lahcen I. Campbell,
Manuel Carbajo Martinez,
Marc Chakiachvili,
Kapeel Chougule,
Mikkel Christensen,
Bruno Contreras-Moreira,
Alayne Cuzick ,
Luca Da Rin Fioretto
and 50 other authors
,
James Allen,
Ridwan M. Amode,
Andrey G. Azov,
Matthieu Barba,
Andrés Becerra,
Jyothish Bhai,
Lahcen I. Campbell,
Manuel Carbajo Martinez,
Marc Chakiachvili,
Kapeel Chougule,
Mikkel Christensen,
Bruno Contreras-Moreira,
Alayne Cuzick ,
Luca Da Rin Fioretto
and 50 other authors
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
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Nishadi H. De Silva ,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data
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Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow,
Arkarachai Fungtammasan,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow,
Arkarachai Fungtammasan,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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Peter Ebert ,
Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
,
Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
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Anoushka Joglekar ,
Andrey Prjibelski,
Ahmed Mahfouz,
Paul Collier,
Susan Lin ,
Anna Katharina Schlusche,
Jordan Marrocco ,
Stephen R. Williams,
Bettina Haase,
Ashley Hayes,
Jennifer G. Chew,
Neil I. Weisenfeld,
Man Ying Wong,
Alexander N. Stein,
Simon A. Hardwick
and 15 other authors
,
Andrey Prjibelski,
Ahmed Mahfouz,
Paul Collier,
Susan Lin ,
Anna Katharina Schlusche,
Jordan Marrocco ,
Stephen R. Williams,
Bettina Haase,
Ashley Hayes,
Jennifer G. Chew,
Neil I. Weisenfeld,
Man Ying Wong,
Alexander N. Stein,
Simon A. Hardwick
and 15 other authors
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
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2020
Adam Frankish ,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
Download from doi.org
,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
Download from doi.org
Marcela K. Tello-Ruiz ,
Sushma Naithani ,
Parul Gupta,
Andrew Olson,
Sharon Wei,
Justin Preece,
Yinping Jiao,
Bo Wang,
Kapeel Chougule,
Priyanka Garg,
Justin Elser,
Sunita Kumari,
Vivek Kumar,
Bruno Contreras-Moreira,
Guy Naamati
and 14 other authors
,
Sushma Naithani ,
Parul Gupta,
Andrew Olson,
Sharon Wei,
Justin Preece,
Yinping Jiao,
Bo Wang,
Kapeel Chougule,
Priyanka Garg,
Justin Elser,
Sunita Kumari,
Vivek Kumar,
Bruno Contreras-Moreira,
Guy Naamati
and 14 other authors
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research
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Kevin L. Howe ,
Premanand Achuthan,
James Allen,
Jamie Allen,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean,
Andrey G. Azov,
Ruth Bennett,
Jyothish Bhai,
Konstantinos Billis,
Sanjay Boddu,
Mehrnaz Charkhchi,
Carla Cummins,
Luca Da Rin Fioretto
and 64 other authors
Download from doi.org
,
Premanand Achuthan,
James Allen,
Jamie Allen,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean,
Andrey G. Azov,
Ruth Bennett,
Jyothish Bhai,
Konstantinos Billis,
Sanjay Boddu,
Mehrnaz Charkhchi,
Carla Cummins,
Luca Da Rin Fioretto
and 64 other authors
Download from doi.org
Cristina Sisu ,
Paul Muir,
Adam Frankish ,
Ian Fiddes,
Mark Diekhans ,
David Thybert,
Duncan T. Odom ,
Paul Flicek ,
Thomas M. Keane ,
Tim Hubbard ,
Jennifer Harrow,
Mark Gerstein
,
Paul Muir,
Adam Frankish ,
Ian Fiddes,
Mark Diekhans ,
David Thybert,
Duncan T. Odom ,
Paul Flicek ,
Thomas M. Keane ,
Tim Hubbard ,
Jennifer Harrow,
Mark Gerstein
Transcriptional activity and strain-specific history of mouse pseudogenes
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2019
Charles A. Steward ,
Jolien Roovers ,
Marie-Marthe Suner ,
Jose M. Gonzalez,
Barbara Uszczynska-Ratajczak ,
Dmitri Pervouchine,
Stephen Fitzgerald,
Margarida Viola ,
Hannah Stamberger,
Fadi F. Hamdan,
Berten Ceulemans,
Patricia Leroy,
Caroline Nava,
Anne Lepine,
Electra Tapanari
and 21 other authors
Download from www.nature.com
,
Jolien Roovers ,
Marie-Marthe Suner ,
Jose M. Gonzalez,
Barbara Uszczynska-Ratajczak ,
Dmitri Pervouchine,
Stephen Fitzgerald,
Margarida Viola ,
Hannah Stamberger,
Fadi F. Hamdan,
Berten Ceulemans,
Patricia Leroy,
Caroline Nava,
Anne Lepine,
Electra Tapanari
and 21 other authors
Download from www.nature.com
Andrew D. Yates ,
Premanand Achuthan,
Wasiu Akanni,
James Allen,
Jamie Allen,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean,
Andrey G. Azov,
Ruth Bennett,
Jyothish Bhai,
Konstantinos Billis,
Sanjay Boddu,
José Carlos Marugán,
Carla Cummins
and 61 other authors
Download from doi.org
,
Premanand Achuthan,
Wasiu Akanni,
James Allen,
Jamie Allen,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean,
Andrey G. Azov,
Ruth Bennett,
Jyothish Bhai,
Konstantinos Billis,
Sanjay Boddu,
José Carlos Marugán,
Carla Cummins
and 61 other authors
Download from doi.org
Kevin L. Howe ,
Bruno Contreras-Moreira,
Nishadi De Silva ,
Gareth Maslen,
Wasiu Akanni,
James Allen,
Jorge Alvarez-Jarreta,
Matthieu Barba,
Dan M. Bolser ,
Lahcen Cambell,
Manuel Carbajo,
Marc Chakiachvili,
Mikkel Christensen,
Carla Cummins,
Alayne Cuzick
and 40 other authors
,
Bruno Contreras-Moreira,
Nishadi De Silva ,
Gareth Maslen,
Wasiu Akanni,
James Allen,
Jorge Alvarez-Jarreta,
Matthieu Barba,
Dan M. Bolser ,
Lahcen Cambell,
Manuel Carbajo,
Marc Chakiachvili,
Mikkel Christensen,
Carla Cummins,
Alayne Cuzick
and 40 other authors
Ensembl Genomes 2020—enabling non-vertebrate genomic research
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Gary Saunders,
Michael Baudis,
Regina Becker ,
Sergi Beltran,
Christophe Béroud,
Ewan Birney,
Cath Brooksbank,
Søren Brunak,
Marc Van den Bulcke,
Rachel Drysdale,
Salvador Capella-Gutierrez ,
Paul Flicek ,
Francesco Florindi,
Peter Goodhand,
Ivo Gut
and 26 other authors
,
Sergi Beltran,
Christophe Béroud,
Ewan Birney,
Cath Brooksbank,
Søren Brunak,
Marc Van den Bulcke,
Rachel Drysdale,
Salvador Capella-Gutierrez ,
Paul Flicek ,
Francesco Florindi,
Peter Goodhand,
Ivo Gut
and 26 other authors
Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022
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Gary Saunders,
Michael Baudis,
Regina Becker ,
Sergi Beltran,
Christophe Béroud,
Ewan Birney,
Cath Brooksbank,
Søren Brunak,
Marc Van den Bulcke,
Rachel Drysdale,
Salvador Capella-Gutierrez ,
Paul Flicek ,
Francesco Florindi,
Peter Goodhand,
Ivo Gut
and 26 other authors
,
Sergi Beltran,
Christophe Béroud,
Ewan Birney,
Cath Brooksbank,
Søren Brunak,
Marc Van den Bulcke,
Rachel Drysdale,
Salvador Capella-Gutierrez ,
Paul Flicek ,
Francesco Florindi,
Peter Goodhand,
Ivo Gut
and 26 other authors
Leveraging European infrastructures to access 1 million human genomes by 2022
Download from www.nature.com
2018
Adam Frankish ,
Mark Diekhans,
Anne-Maud Ferreira,
Rory Johnson,
Irwin Jungreis ,
Jane Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Silvia Carbonell Sala,
Jacqueline Chrast
and 40 other authors
,
Mark Diekhans,
Anne-Maud Ferreira,
Rory Johnson,
Irwin Jungreis ,
Jane Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Silvia Carbonell Sala,
Jacqueline Chrast
and 40 other authors
GENCODE reference annotation for the human and mouse genomes
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Jingtao Lilue ,
Anthony G. Doran,
Ian T. Fiddes,
Monica Abrudan,
Joel Armstrong,
Ruth Bennett,
William Chow,
Joanna Collins,
Stephan Collins,
Anne Czechanski,
Petr Danecek,
Mark Diekhans ,
Dirk-Dominik Dolle,
Matt Dunn,
Richard Durbin
and 44 other authors
Download from www.nature.com
,
Anthony G. Doran,
Ian T. Fiddes,
Monica Abrudan,
Joel Armstrong,
Ruth Bennett,
William Chow,
Joanna Collins,
Stephan Collins,
Anne Czechanski,
Petr Danecek,
Mark Diekhans ,
Dirk-Dominik Dolle,
Matt Dunn,
Richard Durbin
and 44 other authors
Download from www.nature.com
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