All papers authored by Tomasz Kosciolek
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2021
Tomasz Kosciolek 
,
Teresa A. Victor ,
Rayus Kuplicki ,
Maret Rossi,
Mehrbod Estaki ,
Gail Ackermann,
Rob Knight ,
Martin P. Paulus
,
Teresa A. Victor ,
Rayus Kuplicki ,
Maret Rossi,
Mehrbod Estaki ,
Gail Ackermann,
Rob Knight ,
Martin P. Paulus
Individuals with substance use disorders have a distinct oral microbiome pattern
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Vladimir Gligorijević ,
P. Douglas Renfrew,
P. Douglas Renfrew,
Tomasz Kosciolek ,
Julia Koehler Leman ,
Daniel Berenberg,
Tommi Vatanen ,
Chris Chandler,
Bryn C. Taylor,
Ian M. Fisk,
Hera Vlamakis ,
Ramnik J. Xavier ,
Rob Knight ,
Kyunghyun Cho,
Richard Bonneau
,
P. Douglas Renfrew,
P. Douglas Renfrew,
Tomasz Kosciolek ,
Julia Koehler Leman ,
Daniel Berenberg,
Tommi Vatanen ,
Chris Chandler,
Bryn C. Taylor,
Ian M. Fisk,
Hera Vlamakis ,
Ramnik J. Xavier ,
Rob Knight ,
Kyunghyun Cho,
Richard Bonneau
Structure-based protein function prediction using graph convolutional networks
Download from www.nature.com
2020
Gregory D. Poore,
Evguenia Kopylova,
Qiyun Zhu ,
Carolina Carpenter ,
Serena Fraraccio,
Stephen Wandro,
Tomasz Kosciolek ,
Stefan Janssen ,
Jessica Metcalf,
Se Jin Song ,
Jad Kanbar,
Sandrine Miller-Montgomery,
Robert Heaton,
Rana Mckay,
Sandip Pravin Patel
and 2 other authors
,
Carolina Carpenter ,
Serena Fraraccio,
Stephen Wandro,
Tomasz Kosciolek ,
Stefan Janssen ,
Jessica Metcalf,
Se Jin Song ,
Jad Kanbar,
Sandrine Miller-Montgomery,
Robert Heaton,
Rana Mckay,
Sandip Pravin Patel
and 2 other authors
Microbiome analyses of blood and tissues suggest cancer diagnostic approach
Download from www.nature.com
Chris Callewaert ,
Teruaki Nakatsuji ,
Rob Knight ,
Tomasz Kosciolek ,
Alison Vrbanac ,
Paul Kotol ,
Marius Ardeleanu ,
Thomas Hultsch,
Emma Guttman-Yassky ,
Robert Bissonnette ,
Jonathan I. Silverberg ,
James Krueger ,
Alan Menter ,
Neil M. H. Graham ,
Gianluca Pirozzi
and 2 other authors
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,
Teruaki Nakatsuji ,
Rob Knight ,
Tomasz Kosciolek ,
Alison Vrbanac ,
Paul Kotol ,
Marius Ardeleanu ,
Thomas Hultsch,
Emma Guttman-Yassky ,
Robert Bissonnette ,
Jonathan I. Silverberg ,
James Krueger ,
Alan Menter ,
Neil M. H. Graham ,
Gianluca Pirozzi
and 2 other authors
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2019
Qiyun Zhu ,
Uyen Mai,
Wayne Pfeiffer,
Stefan Janssen ,
Francesco Asnicar ,
Jon G. Sanders ,
Pedro Belda-Ferre ,
Gabriel A. Al-Ghalith ,
Evguenia Kopylova,
Daniel McDonald,
Tomasz Kosciolek ,
John B. Yin,
Shi Huang,
Nimaichand Salam,
Jian-Yu Jiao
and 15 other authors
,
Uyen Mai,
Wayne Pfeiffer,
Stefan Janssen ,
Francesco Asnicar ,
Jon G. Sanders ,
Pedro Belda-Ferre ,
Gabriel A. Al-Ghalith ,
Evguenia Kopylova,
Daniel McDonald,
Tomasz Kosciolek ,
John B. Yin,
Shi Huang,
Nimaichand Salam,
Jian-Yu Jiao
and 15 other authors
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Download from www.nature.com
Yoshiki Vazquez-Baeza,
Nicholas A. Bokulich ,
Christian C. Abnet ,
Gabriel A. Al-Ghalith ,
Harriet Alexander,
Evan Bolyen ,
Eric J. Alm ,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai ,
Jordan E. Bisanz ,
Kyle Bittinger,
Matthew R. Dillon ,
Asker Brejnrod,
Colin J. Brislawn
and 99 other authors
,
Christian C. Abnet ,
Gabriel A. Al-Ghalith ,
Harriet Alexander,
Evan Bolyen ,
Eric J. Alm ,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai ,
Jordan E. Bisanz ,
Kyle Bittinger,
Matthew R. Dillon ,
Asker Brejnrod,
Colin J. Brislawn
and 99 other authors
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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2018
Evan Bolyen,
Jai Ram Rideout ,
Matthew R. Dillon ,
Nicholas A. Bokulich ,
Christian Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
Eric J. Alm,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai,
Jordan E. Bisanz,
Kyle Bittinger,
Asker Brejnrod,
Colin J. Brislawn
and 98 other authors
,
Matthew R. Dillon ,
Nicholas A. Bokulich ,
Christian Abnet,
Gabriel A. Al-Ghalith,
Harriet Alexander,
Eric J. Alm,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai,
Jordan E. Bisanz,
Kyle Bittinger,
Asker Brejnrod,
Colin J. Brislawn
and 98 other authors
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
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