Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Bokulich, Nicholas A.; Vazquez-Baeza, Yoshiki; Kang, Kyo Bin; Abnet, Christian C.; Al-Ghalith, Gabriel A.; Alexander, Harriet; Alm, Eric J.; Arumugam, Manimozhiyan; Asnicar, Francesco; Bai, Yang; Bisanz, Jordan E.; Bittinger, Kyle; Bolyen, Evan; Brejnrod, Asker; Brislawn, Colin J.; Brown, C. Titus; Callahan, Benjamin J.; Caporaso, J. Gregory; Caraballo-Rodríguez, Andrés Mauricio; Chase, John; Cope, Emily K.; Da Silva, Ricardo; Diener, Christian; Dillon, Matthew R.; Dorrestein, Pieter C.; Douglas, Gavin M.; Durall, Daniel M.; Duvallet, Claire; Edwardson, Christian F.; Ernst, Madeleine; Estaki, Mehrbod; Fouquier, Jennifer; Gauglitz, Julia M.; Gibbons, Sean M.; Gibson, Deanna L.; Gonzalez, Antonio; Gorlick, Kestrel; Guo, Jiarong; Hillmann, Benjamin; Holmes, Susan; Holste, Hannes; Huttenhower, Curtis; Huttley, Gavin A.; Janssen, Stefan; Jarmusch, Alan K.; Jiang, Lingjing; Kaehler, Benjamin D.; Keefe, Christopher R.; Keim, Paul; Kelley, Scott T.; Knight, Rob; Knights, Dan; Koester, Irina; Kosciolek, Tomasz; Kreps, Jorden; Langille, Morgan G. I.; Lee, Joslynn; Ley, Ruth; Liu, Yong-Xin; Loftfield, Erikka; Lozupone, Catherine; Maher, Massoud; Marotz, Clarisse; Martin, Bryan D.; McDonald, Daniel; McIver, Lauren J.; Melnik, Alexey V.; Metcalf, Jessica L.; Morgan, Sydney C.; Morton, Jamie T.; Naimey, Ahmad Turan; Navas-Molina, Jose A.; Nothias, Louis Felix; Orchanian, Stephanie B.; Pearson, Talima; Peoples, Samuel L.; Petras, Daniel; Preuss, Mary Lai; Pruesse, Elmar; Rasmussen, Lasse Buur; Rideout, Jai Ram; Rivers, Adam; Robeson, Michael S.; Rosenthal, Patrick; Segata, Nicola; Shaffer, Michael; Shiffer, Arron; Sinha, Rashmi; Song, Se Jin; Spear, John R.; Swafford, Austin D.; Thompson, Luke R.; Torres, Pedro J.; Trinh, Pauline; Tripathi, Anupriya; Turnbaugh, Peter J.; Ul-Hasan, Sabah; Vargas, Fernando; Vogtmann, Emily; Walters, William; Wan, Yunhu; Wang, Mingxun; Warren, Jonathan; Weber, Kyle C.; Williamson, Charles H. D.; Willis, Amy D.; Xu, Zhenjiang Zech; Zaneveld, Jesse R.; Zhang, Yilong; Zhu, Qiyun; von Hippel, Max; Bin Kang, Kyo; van der Hooft, Justin J. J.; Vázquez-Baeza, Yoshiki

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Nicholas Bokulich
Bokulich et al., 2019

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Nature Research, Nature Biotechnology, 8(37), p. 852-857, 2019

DOI: 10.1038/s41587-019-0209-9

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@article{Bokulich2019,
  author = {Bokulich, Nicholas A. and Vazquez-Baeza, Yoshiki and Kang, Kyo Bin and Abnet, Christian C. and Al-Ghalith, Gabriel A. and Alexander, Harriet and Alm, Eric J. and Arumugam, Manimozhiyan and Asnicar, Francesco and Bai, Yang and Bisanz, Jordan E. and Bittinger, Kyle and Bolyen, Evan and Brejnrod, Asker and Brislawn, Colin J. and Brown, C. Titus and Callahan, Benjamin J. and Caporaso, J. Gregory and Caraballo-Rodríguez, Andrés Mauricio and Chase, John and Cope, Emily K. and Da Silva, Ricardo and Diener, Christian and Dillon, Matthew R. and Dorrestein, Pieter C. and Douglas, Gavin M. and Durall, Daniel M. and Duvallet, Claire and Edwardson, Christian F. and Ernst, Madeleine and Estaki, Mehrbod and Fouquier, Jennifer and Gauglitz, Julia M. and Gibbons, Sean M. and Gibson, Deanna L. and Gonzalez, Antonio and Gorlick, Kestrel and Guo, Jiarong and Hillmann, Benjamin and Holmes, Susan and Holste, Hannes and Huttenhower, Curtis and Huttley, Gavin A. and Janssen, Stefan and Jarmusch, Alan K. and Jiang, Lingjing and Kaehler, Benjamin D. and Keefe, Christopher R. and Keim, Paul and Kelley, Scott T. and Knight, Rob and Knights, Dan and Koester, Irina and Kosciolek, Tomasz and Kreps, Jorden and Langille, Morgan G. I. and Lee, Joslynn and Ley, Ruth and Liu, Yong-Xin and Loftfield, Erikka and Lozupone, Catherine and Maher, Massoud and Marotz, Clarisse and Martin, Bryan D. and McDonald, Daniel and McIver, Lauren J. and Melnik, Alexey V. and Metcalf, Jessica L. and Morgan, Sydney C. and Morton, Jamie T. and Naimey, Ahmad Turan and Navas-Molina, Jose A. and Nothias, Louis Felix and Orchanian, Stephanie B. and Pearson, Talima and Peoples, Samuel L. and Petras, Daniel and Preuss, Mary Lai and Pruesse, Elmar and Rasmussen, Lasse Buur and Rideout, Jai Ram and Rivers, Adam and Robeson, Michael S. and Rosenthal, Patrick and Segata, Nicola and Shaffer, Michael and Shiffer, Arron and Sinha, Rashmi and Song, Se Jin and Spear, John R. and Swafford, Austin D. and Thompson, Luke R. and Torres, Pedro J. and Trinh, Pauline and Tripathi, Anupriya and Turnbaugh, Peter J. and Ul-Hasan, Sabah and Vargas, Fernando and Vogtmann, Emily and Walters, William and Wan, Yunhu and Wang, Mingxun and Warren, Jonathan and Weber, Kyle C. and Williamson, Charles H. D. and Willis, Amy D. and Xu, Zhenjiang Zech and Zaneveld, Jesse R. and Zhang, Yilong and Zhu, Qiyun and von Hippel, Max and Bin Kang, Kyo and van der Hooft, Justin J. J. and Vázquez-Baeza, Yoshiki},
  doi = {10.1038/s41587-019-0209-9},
  journal = {Nature Biotechnology},
  month = {jul},
  pages = {852-857},
  title = {Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2},
  url = {https://oadoi.org/10.1038/s41587-019-0209-9},
  volume = {37},
  year = {2019}
}

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