All papers authored by Ramnik Xavier
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2023
Toru Nakata 
,
Chenhao Li ,
Toufic Mayassi ,
Helen Lin ,
Koushik Ghosh ,
Åsa Segerstolpe ,
Emma L. Diamond ,
Paula Herbst,
Tommaso Biancalani ,
Shreya Gaddam,
Saurabh Parkar,
Ziqing Lu ,
Alok Jaiswal ,
Bihua Li,
Elizabeth A. Creasey
and 4 other authors
,
Chenhao Li ,
Toufic Mayassi ,
Helen Lin ,
Koushik Ghosh ,
Åsa Segerstolpe ,
Emma L. Diamond ,
Paula Herbst,
Tommaso Biancalani ,
Shreya Gaddam,
Saurabh Parkar,
Ziqing Lu ,
Alok Jaiswal ,
Bihua Li,
Elizabeth A. Creasey
and 4 other authors
Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program
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Joachim Johansen ,
Koji Atarashi ,
Yasumichi Arai,
Nobuyoshi Hirose,
Søren J. Sørensen ,
Tommi Vatanen ,
Mikael Knip ,
Kenya Honda ,
Ramnik J. Xavier ,
Simon Rasmussen ,
Damian R. Plichta
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,
Koji Atarashi ,
Yasumichi Arai,
Nobuyoshi Hirose,
Søren J. Sørensen ,
Tommi Vatanen ,
Mikael Knip ,
Kenya Honda ,
Ramnik J. Xavier ,
Simon Rasmussen ,
Damian R. Plichta
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Donggi Paik ,
Yancong Zhang ,
Lina Yao ,
Y. Zhang,
Sena Bae,
Gabriel D. D’Agostino,
Minghao Zhang,
Eunha Kim ,
Eric A. Franzosa ,
Julian Avila-Pacheco ,
Jordan E. Bisanz ,
Christopher K. Rakowski,
Hera Vlamakis ,
Ramnik J. Xavier ,
Peter J. Turnbaugh
and 7 other authors
,
Yancong Zhang ,
Lina Yao ,
Y. Zhang,
Sena Bae,
Gabriel D. D’Agostino,
Minghao Zhang,
Eunha Kim ,
Eric A. Franzosa ,
Julian Avila-Pacheco ,
Jordan E. Bisanz ,
Christopher K. Rakowski,
Hera Vlamakis ,
Ramnik J. Xavier ,
Peter J. Turnbaugh
and 7 other authors
Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
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2021
Martin Stražar,
Godfrey S. Temba,
Hera Vlamakis ,
Vesla I. Kullaya,
Furaha Lyamuya ,
Blandina T. Mmbaga ,
Leo A. B. Joosten ,
Andre J. A. M. van der Ven,
Mihai G. Netea ,
Quirijn de Mast ,
Ramnik J. Xavier
Download from doi.org
,
Vesla I. Kullaya,
Furaha Lyamuya ,
Blandina T. Mmbaga ,
Leo A. B. Joosten ,
Andre J. A. M. van der Ven,
Mihai G. Netea ,
Quirijn de Mast ,
Ramnik J. Xavier
Download from doi.org
Martin Stražar,
Godfrey S. Temba,
Hera Vlamakis ,
Vesla I. Kullaya,
Furaha Lyamuya ,
Blandina T. Mmbaga ,
Leo A. B. Joosten ,
Andre J. A. M. van der Ven,
Mihai G. Netea ,
Quirijn de Mast ,
Ramnik J. Xavier
Download from doi.org
,
Vesla I. Kullaya,
Furaha Lyamuya ,
Blandina T. Mmbaga ,
Leo A. B. Joosten ,
Andre J. A. M. van der Ven,
Mihai G. Netea ,
Quirijn de Mast ,
Ramnik J. Xavier
Download from doi.org
Martin Stražar,
Godfrey S. Temba,
Hera Vlamakis ,
Vesla I. Kullaya,
Furaha Lyamuya ,
Blandina T. Mmbaga ,
Leo A. B. Joosten ,
Andre J. A. M. van der Ven,
Mihai G. Netea ,
Quirijn de Mast ,
Ramnik J. Xavier
,
Vesla I. Kullaya,
Furaha Lyamuya ,
Blandina T. Mmbaga ,
Leo A. B. Joosten ,
Andre J. A. M. van der Ven,
Mihai G. Netea ,
Quirijn de Mast ,
Ramnik J. Xavier
Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations
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Yuko Sato ,
Koji Atarashi ,
Damian R. Plichta ,
Yasumichi Arai,
Satoshi Sasajima,
Sean M. Kearney,
Wataru Suda,
Kozue Takeshita,
Takahiro Sasaki,
Shoki Okamoto,
Ashwin N. Skelly ,
Yuki Okamura,
Hera Vlamakis ,
Youxian Li,
Takeshi Tanoue
and 20 other authors
,
Koji Atarashi ,
Damian R. Plichta ,
Yasumichi Arai,
Satoshi Sasajima,
Sean M. Kearney,
Wataru Suda,
Kozue Takeshita,
Takahiro Sasaki,
Shoki Okamoto,
Ashwin N. Skelly ,
Yuki Okamura,
Hera Vlamakis ,
Youxian Li,
Takeshi Tanoue
and 20 other authors
Novel bile acid biosynthetic pathways are enriched in the microbiome of centenarians
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Vladimir Gligorijević ,
P. Douglas Renfrew,
P. Douglas Renfrew,
Tomasz Kosciolek ,
Julia Koehler Leman ,
Daniel Berenberg,
Tommi Vatanen ,
Chris Chandler,
Bryn C. Taylor,
Ian M. Fisk,
Hera Vlamakis ,
Ramnik J. Xavier ,
Rob Knight ,
Kyunghyun Cho,
Richard Bonneau
,
P. Douglas Renfrew,
P. Douglas Renfrew,
Tomasz Kosciolek ,
Julia Koehler Leman ,
Daniel Berenberg,
Tommi Vatanen ,
Chris Chandler,
Bryn C. Taylor,
Ian M. Fisk,
Hera Vlamakis ,
Ramnik J. Xavier ,
Rob Knight ,
Kyunghyun Cho,
Richard Bonneau
Structure-based protein function prediction using graph convolutional networks
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Maziar Divangahi ,
Peter Aaby,
Shabaana Abdul Khader ,
Luis B. Barreiro,
Siroon Bekkering ,
Triantafyllos Chavakis ,
Reinout van Crevel,
Nigel Curtis,
Andrew R. DiNardo,
Jorge Dominguez-Andres ,
Raphael Duivenvoorden,
Stephanie Fanucchi,
Zahi Fayad ,
Elaine Fuchs,
Melanie Hamon
and 29 other authors
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,
Peter Aaby,
Shabaana Abdul Khader ,
Luis B. Barreiro,
Siroon Bekkering ,
Triantafyllos Chavakis ,
Reinout van Crevel,
Nigel Curtis,
Andrew R. DiNardo,
Jorge Dominguez-Andres ,
Raphael Duivenvoorden,
Stephanie Fanucchi,
Zahi Fayad ,
Elaine Fuchs,
Melanie Hamon
and 29 other authors
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Joseph Nasser,
Drew T. Bergman ,
Charles P. Fulco,
Philine Guckelberger ,
Benjamin R. Doughty,
Tejal A. Patwardhan,
Thouis R. Jones,
Tung H. Nguyen,
Jacob C. Ulirsch ,
Fritz Lekschas ,
Kristy Mualim,
Heini M. Natri,
Elle M. Weeks ,
Glen Munson,
Michael Kane
and 17 other authors
,
Charles P. Fulco,
Philine Guckelberger ,
Benjamin R. Doughty,
Tejal A. Patwardhan,
Thouis R. Jones,
Tung H. Nguyen,
Jacob C. Ulirsch ,
Fritz Lekschas ,
Kristy Mualim,
Heini M. Natri,
Elle M. Weeks ,
Glen Munson,
Michael Kane
and 17 other authors
Genome-wide enhancer maps link risk variants to disease genes
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Natalia Jaeger ,
Ramya Gamini ,
Marina Cella ,
Jorge L. Schettini ,
Mattia Bugatti,
Shanrong Zhao,
Charles V. Rosadini,
Ekaterina Esaulova ,
Blanda Di Luccia,
Baylee Kinnett,
William Vermi ,
Maxim N. Artyomov ,
Thomas A. Wynn,
Ramnik J. Xavier ,
Scott A. Jelinsky
and 1 other authors
Download from doi.org
,
Ramya Gamini ,
Marina Cella ,
Jorge L. Schettini ,
Mattia Bugatti,
Shanrong Zhao,
Charles V. Rosadini,
Ekaterina Esaulova ,
Blanda Di Luccia,
Baylee Kinnett,
William Vermi ,
Maxim N. Artyomov ,
Thomas A. Wynn,
Ramnik J. Xavier ,
Scott A. Jelinsky
and 1 other authors
Download from doi.org
Shixian Hu,
Werna T. Uniken Venema ,
Harm-Jan Westra,
Arnau Vich Vila,
Ruggero Barbieri ,
Michiel D. Voskuil,
Tjasso Blokzijl,
Bernadien H. Jansen,
Yanni Li ,
Mark J. Daly ,
Ramnik J. Xavier ,
Gerard Dijkstra ,
Eleonora A. Festen,
Rinse K. Weersma
Download from www.nature.com
,
Harm-Jan Westra,
Arnau Vich Vila,
Ruggero Barbieri ,
Michiel D. Voskuil,
Tjasso Blokzijl,
Bernadien H. Jansen,
Yanni Li ,
Mark J. Daly ,
Ramnik J. Xavier ,
Gerard Dijkstra ,
Eleonora A. Festen,
Rinse K. Weersma
Download from www.nature.com
2020
Kwontae You ,
Lingfei Wang ,
Chih-Hung Chou ,
Kai Liu ,
Toru Nakata ,
Alok Jaiswal ,
Junmei Yao ,
Ariel Lefkovith ,
Abdifatah Omar ,
Jacqueline G. Perrigoue ,
Jennifer E. Towne ,
Aviv Regev ,
Daniel B. Graham ,
Ramnik J. Xavier
,
Lingfei Wang ,
Chih-Hung Chou ,
Kai Liu ,
Toru Nakata ,
Alok Jaiswal ,
Junmei Yao ,
Ariel Lefkovith ,
Abdifatah Omar ,
Jacqueline G. Perrigoue ,
Jennifer E. Towne ,
Aviv Regev ,
Daniel B. Graham ,
Ramnik J. Xavier
QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis
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Maziar Divangahi ,
Peter Aaby,
Shabaana Abdul Khader ,
Luis B. Barreiro,
Siroon Bekkering ,
Triantafyllos Chavakis ,
Reinout van Crevel,
Nigel Curtis,
Andrew R. DiNardo,
Jorge Dominguez-Andres ,
Raphael Duivenvoorden,
Raphael Duivenwoorden,
Stephanie Fanucchi,
Zahi Fayad ,
Elaine Fuchs
and 30 other authors
,
Peter Aaby,
Shabaana Abdul Khader ,
Luis B. Barreiro,
Siroon Bekkering ,
Triantafyllos Chavakis ,
Reinout van Crevel,
Nigel Curtis,
Andrew R. DiNardo,
Jorge Dominguez-Andres ,
Raphael Duivenvoorden,
Raphael Duivenwoorden,
Stephanie Fanucchi,
Zahi Fayad ,
Elaine Fuchs
and 30 other authors
Trained immunity, tolerance, priming and differentiation: distinct immunological processes
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2019
Eric A. Franzosa ,
Alexandra Sirota-Madi,
Julian Avila-Pacheco ,
Nadine Fornelos,
Henry J. Haiser,
Stefan Reinker,
Tommi Vatanen ,
A. Brantley Hall,
Himel Mallick,
Lauren J. McIver,
Jenny S. Sauk,
Robin G. Wilson,
Betsy W. Stevens,
Justin M. Scott,
Kerry Pierce
and 12 other authors
,
Alexandra Sirota-Madi,
Julian Avila-Pacheco ,
Nadine Fornelos,
Henry J. Haiser,
Stefan Reinker,
Tommi Vatanen ,
A. Brantley Hall,
Himel Mallick,
Lauren J. McIver,
Jenny S. Sauk,
Robin G. Wilson,
Betsy W. Stevens,
Justin M. Scott,
Kerry Pierce
and 12 other authors
Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease
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Tommi Vatanen ,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
Download from www.nature.com
,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
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Yael Haberman ,
Rebekah Karns,
Phillip J. Dexheimer ,
Melanie Schirmer,
Judith Somekh,
Ingrid Jurickova,
Tzipi Braun,
Elizabeth Novak,
Laura Bauman,
Margaret H. Collins ,
Angela Mo,
Michael J. Rosen,
Erin Bonkowski ,
Nathan Gotman,
Alison Marquis
and 27 other authors
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,
Rebekah Karns,
Phillip J. Dexheimer ,
Melanie Schirmer,
Judith Somekh,
Ingrid Jurickova,
Tzipi Braun,
Elizabeth Novak,
Laura Bauman,
Margaret H. Collins ,
Angela Mo,
Michael J. Rosen,
Erin Bonkowski ,
Nathan Gotman,
Alison Marquis
and 27 other authors
Download from www.nature.com
2018
Tommi Vatanen ,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour ,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
Download from www.nature.com
,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour ,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
Download from www.nature.com
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