155 papers found
InterPro--an integrated documentation resource for protein families, domains and functional sites
Using GeneWise in the Drosophila Annotation Experiment
ProtEST: protein multiple sequence alignments from expressed sequence tags
Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
SPEM: a parser for EMBL style flat file database entries
Dynamite: a flexible code generating language for dynamic programming methods used in sequence comparison.
PairWise and SearchWise: Finding the Optimal Alignment in a Simultaneous Comparison of a Protein Profile against All DNA Translation Frames
PH domain: the first anniversary
A putative homology of U2AF 65 in S.cerevisiae
Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors
A putative homolog of U2AF 65 in S.cerevisiae
Studies in Probabilistic Sequence Alignment and Evolution
Pfam: Multiple Sequence Alignments and HMM-Profiles of Protein Domains
The Pfam Protein Families Database
Visualising the Epigenome
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