All papers authored by Sean Eddy
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Jaina Mistry,
Alex Bateman ,
Sean R. Eddy ,
Aurélien Luciani,
Simon C. Potter ,
Matloob Qureshi ,
Lorna J. Richardson ,
Gustavo A. Salazar,
Alfredo Smart,
Erik L. L. Sonnhammer,
Layla Hirsh,
Lisanna Paladin,
Damiano Piovesan ,
Silvio C. E. Tosatto
and 1 other authors
The Pfam protein families database in 2019
Download from doi.org
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Sean R. Eddy
Download from doi.org
Homology searches for structural RNAs: from proof of principle to practical use
Download from rnajournal.cshlp.org
Computational Analysis of Conserved RNA Secondary Structure in Transcriptomes and Genomes
Download from www.ncbi.nlm.nih.gov
Infernal 1.1: 100-fold faster RNA homology searches
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nhmmer: DNA homology search with profile HMMs
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Computational identification of functional RNA homologs in metagenomic data
Download from www.tandfonline.com
Transcription Factors That Convert Adult Cell Identity Are Differentially Polycomb Repressed
Download from dx.doi.org
,
Alex Bateman ,
Marco Punta
Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions
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,
Robert Hubley,
Thomas A. Jones,
Jerzy Jurka,
Arian F. A. Smit,
Robert D. Finn
Dfam: a database of repetitive DNA based on profile hidden Markov models
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,
Eric P. Nawrocki,
Sean R. Eddy ,
Paul P. Gardner,
Alex Bateman
Rfam 11.0: 10 years of RNA families
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Cell type–specific genomics of Drosophila neurons
Download from dx.doi.org
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