Juan M. Vaquerizas

Papers authored by Juan M. Vaquerizas

This paper is made freely available by the publisher.

2012 Ian Dunham

, Marijke J. van Baren, Stephen C. J. Parker, Anshul Kundaje, Florencia Pauli, Kate R. Rosenbloom, Peter Sabo, Alexias Safi, Amartya Sanyal, Noam Shoresh, Jeremy M. Simon, Lingyun Song, Nathan D. Trinklein, Jennifer Harrow, Rajinder Kaul and 558 other authors

An integrated encyclopedia of DNA elements in the human genome

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Thomas Conrad, Florence M. G. Cavalli, Juan M. Vaquerizas

, Nicholas M. Luscombe, Asifa Akhtar

Drosophila Dosage Compensation Involves Enhanced Pol II Recruitment to Male X-Linked Promoters

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Kin Chung Lam, Friederike Mühlpfordt, Juan M. Vaquerizas

, Sunil Jayaramaiah Raja, Herbert Holz, Nicholas M. Luscombe, Thomas Manke, Asifa Akhtar

The NSL Complex Regulates Housekeeping Genes in Drosophila

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Thomas Conrad, Florence M. G. Cavalli, Herbert Holz, Erinc Hallacli, Jop Kind, Ibrahim Ilik, Juan M. Vaquerizas

, Nicholas M. Luscombe, Asifa Akhtar

The MOF Chromobarrel Domain Controls Genome-wide H4K16 Acetylation and Spreading of the MSL Complex

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Jüri Reimand, Anu Aun, Jaak Vilo

, Juan M. Vaquerizas

, Juhan Sedman, Nicholas M. Luscombe

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

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This paper was not found in any repository, but could be made available legally by the author.

2011 Juan M. Vaquerizas

, Sarah A. Teichmann

, Nicholas M. Luscombe

How Do You Find Transcription Factors? Computational Approaches to Compile and Annotate Repertoires of Regulators for Any Genome

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Richard M. Myers, M. J. van Baren, Zhengdong Zhang, Ann S. Zweig, Michael Snyder, John Stamatoyannopoulos, Ross C. Hardison, Thomas R. Gingeras, W. James Kent, Barbara Wold, Pouya Kheradpour, L. Wang, Li Wang, T. R. Gingeras, Manolis Kellis and 348 other authors

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

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Juan M. Vaquerizas

, Asifa Akhtar, Nicholas M. Luscombe

Large-Scale Nuclear Architecture and Transcriptional Control

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Florence Mg G. Cavalli, Richard Bourgon

, Wolfgang Huber, Juan M. Vaquerizas

, Nicholas M. Luscombe

SpeCond: a method to detect condition-specific gene expression

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2010 Sunil Jayaramaiah Raja, Iryna Charapitsa, Thomas Conrad, Juan M. Vaquerizas

, Philipp Gebhardt, Herbert Holz, Jan Kadlec, Sven Fraterman, Nicholas M. Luscombe, Asifa Akhtar

The Nonspecific Lethal Complex Is a Transcriptional Regulator in Drosophila

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Jüri Reimand, Juan M. Vaquerizas

, Annabel E. Todd, Jaak Vilo

, Nicholas M. Luscombe

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

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Arttu Jolma, Teemu Kivioja, Jarkko Toivonen, Lu Cheng

, Gonghong Wei, Martin Enge, Mikko Taipale, Juan M. Vaquerizas

, Jian Yan, Martin Bonke, Mikko J. Sillanpää, Kimmo Palin

, Shaheynoor Talukder, Timothy R. Hughes, Nicholas M. Luscombe and 2 other authors

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

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Juan M. Vaquerizas

, Ritsuko Suyama, Jop Kind, Kota Miura, Nicholas M. Luscombe, Asifa Akhtar

Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome

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2009 Juan M. Vaquerizas

, Sarah K. Kummerfeld, Sarah A. Teichmann

, Nicholas M. Luscombe

A census of human transcription factors: function, expression and evolution

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2008 Jop Kind, Juan M. Vaquerizas

, Philipp Gebhardt, Marc Gentzel, Nicholas M. Luscombe, Paul Bertone

, Asifa Akhtar

Genome-wide Analysis Reveals MOF as a Key Regulator of Dosage Compensation and Gene Expression in Drosophila

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2007 Daniel Rico, Juan M. Vaquerizas

, Hernán Dopazo, Lisardo Boscá

Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences

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2006 David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet, Juan M. Vaquerizas

, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero

, Fátima Al-Shahrour, Joaquín Dopazo

Next station in microarray data analysis: GEPAS

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Lucía Conde, Juan M. Vaquerizas

, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz

, Joaquín Dopazo

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

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Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas

, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

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Josep Ramon Goñi, Juan Manuel Vaquerizas

, Joaquin Dopazo, Modesto Orozco

Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions

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Papers authored by Juan M. Vaquerizas