Researcher
Tomas Marques-Bonet
Universitat Pompeu Fabra
Statistics
29 papers found
All papers authored by Tomas Marques-Bonet
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2024
Lisa Schrade 
,
Nancy Mah ,
Anita Bandrowski ,
Ying Chen ,
Johannes Dewender ,
Sebastian Diecke ,
Christian Hiepen ,
Madeline A. Lancaster ,
Tomas Marques-Bonet ,
Sira Martinez ,
Sabine C. Mueller ,
Christopher Navara ,
Alessandro Prigione ,
Stefanie Seltmann ,
Jaroslaw Sochacki
and 4 other authors
Download from doi.org
,
Nancy Mah ,
Anita Bandrowski ,
Ying Chen ,
Johannes Dewender ,
Sebastian Diecke ,
Christian Hiepen ,
Madeline A. Lancaster ,
Tomas Marques-Bonet ,
Sira Martinez ,
Sabine C. Mueller ,
Christopher Navara ,
Alessandro Prigione ,
Stefanie Seltmann ,
Jaroslaw Sochacki
and 4 other authors
Download from doi.org
Delphine Larivière ,
Linelle Abueg,
Nadolina Brajuka,
Cristóbal Gallardo-Alba,
Bjorn Grüning ,
Byung June Ko,
Alex Ostrovsky,
Marc Palmada-Flores ,
Brandon D. Pickett ,
Keon Rabbani ,
Agostinho Antunes ,
Jennifer R. Balacco,
Mark J. P. Chaisson ,
Haoyu Cheng,
Joanna Collins
and 26 other authors
,
Linelle Abueg,
Nadolina Brajuka,
Cristóbal Gallardo-Alba,
Bjorn Grüning ,
Byung June Ko,
Alex Ostrovsky,
Marc Palmada-Flores ,
Brandon D. Pickett ,
Keon Rabbani ,
Agostinho Antunes ,
Jennifer R. Balacco,
Mark J. P. Chaisson ,
Haoyu Cheng,
Joanna Collins
and 26 other authors
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
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2023
Lukas F. K. Kuderna ,
Jacob C. Ulirsch,
Sabrina Rashid,
Mohamed Ameen,
Laksshman Sundaram,
Glenn Hickey ,
Anthony J. Cox,
Hong Gao ,
Arvind Kumar,
Francois Aguet ,
Matthew J. Christmas,
Hiram Clawson,
Maximilian Haeussler,
Mareike C. Janiak ,
Martin Kuhlwilm
and 77 other authors
,
Jacob C. Ulirsch,
Sabrina Rashid,
Mohamed Ameen,
Laksshman Sundaram,
Glenn Hickey ,
Anthony J. Cox,
Hong Gao ,
Arvind Kumar,
Francois Aguet ,
Matthew J. Christmas,
Hiram Clawson,
Maximilian Haeussler,
Mareike C. Janiak ,
Martin Kuhlwilm
and 77 other authors
Identification of constrained sequence elements across 239 primate genomes
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Lara Urban ,
Albert Perlas ,
Olga Francino ,
Joan Martí‐Carreras ,
Brenda A. Muga ,
Jenniffer W. Mwangi ,
Laura Boykin Okalebo ,
Jo‐Ann L. Stanton,
Amanda Black ,
Nick Waipara ,
Claudia Fontsere ,
David Eccles ,
Harika Urel,
Tim Reska,
Hernán E. Morales
and 6 other authors
,
Albert Perlas ,
Olga Francino ,
Joan Martí‐Carreras ,
Brenda A. Muga ,
Jenniffer W. Mwangi ,
Laura Boykin Okalebo ,
Jo‐Ann L. Stanton,
Amanda Black ,
Nick Waipara ,
Claudia Fontsere ,
David Eccles ,
Harika Urel,
Tim Reska,
Hernán E. Morales
and 6 other authors
Real‐time genomics for One Health
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Paula Esteller-Cucala ,
Marc Palmada-Flores ,
Lukas F. K. Kuderna,
Claudia Fontsere,
Aitor Serres-Armero,
Marc Dabad ,
María Torralvo ,
Armida Faella,
Luis Ferrández-Peral,
Laia Llovera,
Oscar Fornas ,
Eva Julià ,
Erika Ramírez,
Irene González,
Jochen Hecht
and 3 other authors
,
Marc Palmada-Flores ,
Lukas F. K. Kuderna,
Claudia Fontsere,
Aitor Serres-Armero,
Marc Dabad ,
María Torralvo ,
Armida Faella,
Luis Ferrández-Peral,
Laia Llovera,
Oscar Fornas ,
Eva Julià ,
Erika Ramírez,
Irene González,
Jochen Hecht
and 3 other authors
Y chromosome sequence and epigenomic reconstruction across human populations
Download from doi.org
Petko P. Fiziev ,
Jeremy McRae ,
Jacob C. Ulirsch ,
Jacqueline S. Dron ,
Tobias Hamp,
Yanshen Yang,
Pierrick Wainschtein ,
Zijian Ni ,
Joshua G. Schraiber,
Hong Gao ,
Dylan Cable,
Yair Field ,
Francois Aguet ,
Marc Fasnacht,
Ahmed Metwally
and 6 other authors
,
Jeremy McRae ,
Jacob C. Ulirsch ,
Jacqueline S. Dron ,
Tobias Hamp,
Yanshen Yang,
Pierrick Wainschtein ,
Zijian Ni ,
Joshua G. Schraiber,
Hong Gao ,
Dylan Cable,
Yair Field ,
Francois Aguet ,
Marc Fasnacht,
Ahmed Metwally
and 6 other authors
Rare penetrant mutations confer severe risk of common diseases
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Lukas F. K. Kuderna ,
Hong Gao ,
Mareike C. Janiak ,
Martin Kuhlwilm ,
Joseph D. Orkin ,
Thomas Bataillon ,
Shivakumara Manu ,
Alejandro Valenzuela ,
Juraj Bergman ,
Marjolaine Rousselle ,
Felipe Ennes Silva ,
Lidia Agueda ,
Julie Blanc ,
Marta Gut ,
Dorien de Vries
and 60 other authors
,
Hong Gao ,
Mareike C. Janiak ,
Martin Kuhlwilm ,
Joseph D. Orkin ,
Thomas Bataillon ,
Shivakumara Manu ,
Alejandro Valenzuela ,
Juraj Bergman ,
Marjolaine Rousselle ,
Felipe Ennes Silva ,
Lidia Agueda ,
Julie Blanc ,
Marta Gut ,
Dorien de Vries
and 60 other authors
A global catalog of whole-genome diversity from 233 primate species
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Yang Zhou ,
Xiaoyu Zhan,
Jiazheng Jin,
Long Zhou ,
Juraj Bergman ,
Xuemei Li,
Marjolaine Marie C. Rousselle,
Meritxell Riera Belles,
Lan Zhao,
Miaoquan Fang,
Jiawei Chen,
Qi Fang ,
Lukas Kuderna ,
Tomas Marques-Bonet ,
Haruka Kitayama
and 8 other authors
,
Xiaoyu Zhan,
Jiazheng Jin,
Long Zhou ,
Juraj Bergman ,
Xuemei Li,
Marjolaine Marie C. Rousselle,
Meritxell Riera Belles,
Lan Zhao,
Miaoquan Fang,
Jiawei Chen,
Qi Fang ,
Lukas Kuderna ,
Tomas Marques-Bonet ,
Haruka Kitayama
and 8 other authors
Eighty million years of rapid evolution of the primate Y chromosome
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Erik F. Sørensen ,
R. Alan Harris ,
Liye Zhang ,
Muthuswamy Raveendran ,
Lukas F. K. Kuderna ,
Jerilyn A. Walker,
Jessica M. Storer ,
Martin Kuhlwilm ,
Claudia Fontsere ,
Lakshmi Seshadri,
Christina M. Bergey ,
Andrew S. Burrell,
Juraj Bergman ,
Jane E. Phillips-Conroy ,
Fekadu Shiferaw
and 17 other authors
,
R. Alan Harris ,
Liye Zhang ,
Muthuswamy Raveendran ,
Lukas F. K. Kuderna ,
Jerilyn A. Walker,
Jessica M. Storer ,
Martin Kuhlwilm ,
Claudia Fontsere ,
Lakshmi Seshadri,
Christina M. Bergey ,
Andrew S. Burrell,
Juraj Bergman ,
Jane E. Phillips-Conroy ,
Fekadu Shiferaw
and 17 other authors
Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons
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Yong Shao ,
Long Zhou ,
Fang Li ,
Lan Zhao ,
Bao-Lin Zhang ,
Feng Shao ,
Jia-Wei Chen,
Chun-Yan Chen ,
Xupeng Bi ,
Xiao-Lin Zhuang ,
Hong-Liang Zhu,
Jiang Hu ,
Zongyi Sun ,
Xin Li,
Depeng Wang
and 28 other authors
,
Long Zhou ,
Fang Li ,
Lan Zhao ,
Bao-Lin Zhang ,
Feng Shao ,
Jia-Wei Chen,
Chun-Yan Chen ,
Xupeng Bi ,
Xiao-Lin Zhuang ,
Hong-Liang Zhu,
Jiang Hu ,
Zongyi Sun ,
Xin Li,
Depeng Wang
and 28 other authors
Phylogenomic analyses provide insights into primate evolution
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Hong Gao ,
Tobias Hamp,
Jeffrey Ede,
Joshua G. Schraiber,
Jeremy McRae ,
Moriel Singer-Berk ,
Yanshen Yang,
Anastasia S. D. Dietrich ,
Petko P. Fiziev ,
Lukas F. K. Kuderna ,
Laksshman Sundaram ,
Yibing Wu,
Aashish Adhikari ,
Yair Field ,
Chen Chen
and 87 other authors
,
Tobias Hamp,
Jeffrey Ede,
Joshua G. Schraiber,
Jeremy McRae ,
Moriel Singer-Berk ,
Yanshen Yang,
Anastasia S. D. Dietrich ,
Petko P. Fiziev ,
Lukas F. K. Kuderna ,
Laksshman Sundaram ,
Yibing Wu,
Aashish Adhikari ,
Yair Field ,
Chen Chen
and 87 other authors
The landscape of tolerated genetic variation in humans and primates
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Blair P. Bentley ,
Tomás Carrasco-Valenzuela ,
Elisa K. S. Ramos ,
Harvinder Pawar ,
Larissa Souza Arantes,
Alana Alexander ,
Shreya M. Banerjee ,
Patrick Masterson,
Martin Kuhlwilm,
Martin Pippel ,
Jacquelyn Mountcastle,
Bettina Haase,
Marcela Uliano-Silva,
Giulio Formenti,
Kerstin Howe
and 32 other authors
Download from doi.org
,
Tomás Carrasco-Valenzuela ,
Elisa K. S. Ramos ,
Harvinder Pawar ,
Larissa Souza Arantes,
Alana Alexander ,
Shreya M. Banerjee ,
Patrick Masterson,
Martin Kuhlwilm,
Martin Pippel ,
Jacquelyn Mountcastle,
Bettina Haase,
Marcela Uliano-Silva,
Giulio Formenti,
Kerstin Howe
and 32 other authors
Download from doi.org
2022
Florent Murat ,
Noe Mbengue ,
Sofia Boeg Winge,
Winge Sb,
Timo Trefzer,
Evgeny Leushkin,
Mari Sepp ,
Margarida Cardoso-Moreira ,
Julia Schmidt,
Celine Schneider,
Katharina Mößinger,
Thoomke Brüning,
Francesco Lamanna ,
Meritxell Riera Belles,
Christian Conrad
and 11 other authors
,
Noe Mbengue ,
Sofia Boeg Winge,
Winge Sb,
Timo Trefzer,
Evgeny Leushkin,
Mari Sepp ,
Margarida Cardoso-Moreira ,
Julia Schmidt,
Celine Schneider,
Katharina Mößinger,
Thoomke Brüning,
Francesco Lamanna ,
Meritxell Riera Belles,
Christian Conrad
and 11 other authors
The molecular evolution of spermatogenesis across mammals
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Shyam Gopalakrishnan ,
S. Sunna Ebenesersdóttir,
Inge K. C. Lundstrøm,
Gordon Turner-Walker ,
Kristjan H. S. Moore ,
Pierre Luisi ,
Ashot Margaryan ,
Michael D. Martin ,
Martin Rene Ellegaard,
Ólafur Þ. Magnússon,
Ásgeir Sigurðsson,
Steinunn Snorradóttir,
Droplaug N. Magnúsdóttir,
Jason E. Laffoon ,
Lucy van Dorp
and 45 other authors
,
S. Sunna Ebenesersdóttir,
Inge K. C. Lundstrøm,
Gordon Turner-Walker ,
Kristjan H. S. Moore ,
Pierre Luisi ,
Ashot Margaryan ,
Michael D. Martin ,
Martin Rene Ellegaard,
Ólafur Þ. Magnússon,
Ásgeir Sigurðsson,
Steinunn Snorradóttir,
Droplaug N. Magnúsdóttir,
Jason E. Laffoon ,
Lucy van Dorp
and 45 other authors
The population genomic legacy of the second plague pandemic
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Harris A. Lewin ,
Stephen Richards ,
Erez Lieberman Aiden,
Miguel L. Allende ,
John M. Archibald,
Miklós Bálint,
Katharine B. Barker,
Bridget Baumgartner,
Katherine Belov,
Giorgio Bertorelle,
Mark L. Blaxter ,
Jing Cai,
Nicolette D. Caperello,
Keith Carlson,
Juan Carlos Castilla-Rubio
and 70 other authors
,
Stephen Richards ,
Erez Lieberman Aiden,
Miguel L. Allende ,
John M. Archibald,
Miklós Bálint,
Katharine B. Barker,
Bridget Baumgartner,
Katherine Belov,
Giorgio Bertorelle,
Mark L. Blaxter ,
Jing Cai,
Nicolette D. Caperello,
Keith Carlson,
Juan Carlos Castilla-Rubio
and 70 other authors
The Earth BioGenome Project 2020: Starting the clock
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Mara K. N. Lawniczak,
Richard Durbin,
Paul Flicek,
Kerstin Lindblad-Toh ,
Xiaofeng Wei,
John M. Archibald ,
William J. Baker ,
Katherine Belov,
Mark L. Blaxter,
Tomas Marques Bonet ,
Anna K. Childers ,
Jonathan A. Coddington ,
Keith A. Crandall ,
Andrew J. Crawford,
Robert P. Davey
and 30 other authors
,
Xiaofeng Wei,
John M. Archibald ,
William J. Baker ,
Katherine Belov,
Mark L. Blaxter,
Tomas Marques Bonet ,
Anna K. Childers ,
Jonathan A. Coddington ,
Keith A. Crandall ,
Andrew J. Crawford,
Robert P. Davey
and 30 other authors
Standards recommendations for the Earth BioGenome Project
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Marc Palmada-Flores ,
Joseph D. Orkin ,
Bettina Haase ,
Jacquelyn Mountcastle ,
Mads F. Bertelsen ,
Olivier Fedrigo ,
Lukas F. K. Kuderna ,
Erich D. Jarvis ,
Tomas Marques-Bonet
,
Joseph D. Orkin ,
Bettina Haase ,
Jacquelyn Mountcastle ,
Mads F. Bertelsen ,
Olivier Fedrigo ,
Lukas F. K. Kuderna ,
Erich D. Jarvis ,
Tomas Marques-Bonet
A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta)
Download from academic.oup.com
2021
Martin Kuhlwilm ,
Claudia Fontsere ,
Sojung Han ,
Marina Alvarez-Estape ,
Tomas Marques-Bonet
,
Claudia Fontsere ,
Sojung Han ,
Marina Alvarez-Estape ,
Tomas Marques-Bonet
HuConTest: Testing Human Contamination in Great Ape Samples
Download from doi.org
Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Juwan Kim,
Chul Lee,
Byung June Ko,
Mark Chaisson,
Gregory L. Gedman,
Lindsey J. Cantin
and 112 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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Amanda D. Melin ,
Joseph D. Orkin ,
Mareike C. Janiak ,
Alejandro Valenzuela ,
Lukas Kuderna ,
Chiea Chuen Khor ,
Frank Marrone ,
Weng Khong Lim ,
Dietmar Zinner ,
Jessica G. H. Lee,
Hasinala Ramangason ,
Patrick Tan,
Alphonse Zaramody,
Julie E. Horvath ,
Govindhaswamy Umapathy
and 24 other authors
,
Joseph D. Orkin ,
Mareike C. Janiak ,
Alejandro Valenzuela ,
Lukas Kuderna ,
Chiea Chuen Khor ,
Frank Marrone ,
Weng Khong Lim ,
Dietmar Zinner ,
Jessica G. H. Lee,
Hasinala Ramangason ,
Patrick Tan,
Alphonse Zaramody,
Julie E. Horvath ,
Govindhaswamy Umapathy
and 24 other authors
Variation in predicted COVID‐19 risk among lemurs and lorises
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