All papers authored by Mark Gerstein
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2021
Peter Ebert 
,
Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
,
Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
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2020
Anurag Sethi ,
Mengting Gu ,
Emrah Gumusgoz,
Landon Chan,
Koon-Kiu Yan ,
Joel Rozowsky ,
Iros Barozzi,
Veena Afzal,
Jennifer A. Akiyama,
Ingrid Plajzer-Frick,
Chengfei Yan,
Catherine S. Novak,
Momoe Kato,
Tyler H. Garvin,
Quan Pham
and 10 other authors
,
Mengting Gu ,
Emrah Gumusgoz,
Landon Chan,
Koon-Kiu Yan ,
Joel Rozowsky ,
Iros Barozzi,
Veena Afzal,
Jennifer A. Akiyama,
Ingrid Plajzer-Frick,
Chengfei Yan,
Catherine S. Novak,
Momoe Kato,
Tyler H. Garvin,
Quan Pham
and 10 other authors
Supervised enhancer prediction with epigenetic pattern recognition and targeted validation
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Cristina Sisu ,
Paul Muir,
Adam Frankish ,
Ian Fiddes,
Mark Diekhans ,
David Thybert,
Duncan T. Odom ,
Paul Flicek ,
Thomas M. Keane ,
Tim Hubbard ,
Jennifer Harrow,
Mark Gerstein
,
Paul Muir,
Adam Frankish ,
Ian Fiddes,
Mark Diekhans ,
David Thybert,
Duncan T. Odom ,
Paul Flicek ,
Thomas M. Keane ,
Tim Hubbard ,
Jennifer Harrow,
Mark Gerstein
Transcriptional activity and strain-specific history of mouse pseudogenes
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2018
Jingtao Lilue ,
Anthony G. Doran,
Ian T. Fiddes,
Monica Abrudan,
Joel Armstrong,
Ruth Bennett,
William Chow,
Joanna Collins,
Stephan Collins,
Anne Czechanski,
Petr Danecek,
Mark Diekhans ,
Dirk-Dominik Dolle,
Matt Dunn,
Richard Durbin
and 44 other authors
Download from www.nature.com
,
Anthony G. Doran,
Ian T. Fiddes,
Monica Abrudan,
Joel Armstrong,
Ruth Bennett,
William Chow,
Joanna Collins,
Stephan Collins,
Anne Czechanski,
Petr Danecek,
Mark Diekhans ,
Dirk-Dominik Dolle,
Matt Dunn,
Richard Durbin
and 44 other authors
Download from www.nature.com
Vitor Onuchic ,
Eugene Lurie ,
Ivenise Carrero ,
Piotr Pawliczek,
Ronak Y. Patel ,
Joel Rozowsky ,
Timur Galeev ,
Zhuoyi Huang ,
Robert C. Altshuler ,
Zhizhuo Zhang ,
R. Alan Harris ,
Cristian Coarfa ,
Lillian Ashmore ,
Jessica W. Bertol,
Walid D. Fakhouri
and 4 other authors
,
Eugene Lurie ,
Ivenise Carrero ,
Piotr Pawliczek,
Ronak Y. Patel ,
Joel Rozowsky ,
Timur Galeev ,
Zhuoyi Huang ,
Robert C. Altshuler ,
Zhizhuo Zhang ,
R. Alan Harris ,
Cristian Coarfa ,
Lillian Ashmore ,
Jessica W. Bertol,
Walid D. Fakhouri
and 4 other authors
Allele-specific epigenome maps reveal sequence-dependent stochastic switching at regulatory loci
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Anurag Sethi ,
Mengting Gu ,
Emrah Gumusgoz,
Landon Chan,
Koon-Kiu Yan ,
Joel S. Rozowsky ,
Iros Barozzi ,
Veena Afzal ,
Jennifer Akiyama ,
Ingrid Plajzer-Frick,
Chengfei Yan ,
Catherine Pickle,
Momoe Kato ,
Tyler Garvin ,
Quan Pham
and 11 other authors
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,
Mengting Gu ,
Emrah Gumusgoz,
Landon Chan,
Koon-Kiu Yan ,
Joel S. Rozowsky ,
Iros Barozzi ,
Veena Afzal ,
Jennifer Akiyama ,
Ingrid Plajzer-Frick,
Chengfei Yan ,
Catherine Pickle,
Momoe Kato ,
Tyler Garvin ,
Quan Pham
and 11 other authors
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Adam P. Arkin ,
Robert W. Cottingham,
Christopher S. Henry,
Nomi L. Harris ,
Rick L. Stevens,
Sergei Maslov,
Paramvir Dehal,
Doreen Ware ,
Fernando Perez ,
Shane Canon,
Michael W. Sneddon,
Matthew L. Henderson,
William J. Riehl,
Dan Murphy-Olson,
Stephen Y. Chan
and 66 other authors
,
Robert W. Cottingham,
Christopher S. Henry,
Nomi L. Harris ,
Rick L. Stevens,
Sergei Maslov,
Paramvir Dehal,
Doreen Ware ,
Fernando Perez ,
Shane Canon,
Michael W. Sneddon,
Matthew L. Henderson,
William J. Riehl,
Dan Murphy-Olson,
Stephen Y. Chan
and 66 other authors
KBase: The United States Department of Energy Systems Biology Knowledgebase
Download from doi.org
2017
Husen M. Umer ,
Lina Wadi,
Jing Zhang ,
David A. Wheeler ,
Liis Uusküla-Reimand,
Claes Wadelius ,
Kjong Van Lehmann,
Tatsuhiko Tsunoda ,
Qianyun Guo20,
Esther Rheinbay ,
Randi Istrup Pedersen ,
Nielsen Mm,
Morten Muhlig Nielsen ,
Andrés Lanzós ,
Carl Herrmann
and 72 other authors
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,
Lina Wadi,
Jing Zhang ,
David A. Wheeler ,
Liis Uusküla-Reimand,
Claes Wadelius ,
Kjong Van Lehmann,
Tatsuhiko Tsunoda ,
Qianyun Guo20,
Esther Rheinbay ,
Randi Istrup Pedersen ,
Nielsen Mm,
Morten Muhlig Nielsen ,
Andrés Lanzós ,
Carl Herrmann
and 72 other authors
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