All papers authored by Kira Makarova
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2023
Han Altae-Tran 
,
Soumya Kannan ,
Anthony J. Suberski,
Kepler S. Mears,
F. Esra Demircioglu ,
Lukas Moeller ,
Selin Kocalar ,
Rachel Oshiro ,
Kira S. Makarova ,
Rhiannon K. Macrae ,
Eugene V. Koonin ,
Feng Zhang
,
Soumya Kannan ,
Anthony J. Suberski,
Kepler S. Mears,
F. Esra Demircioglu ,
Lukas Moeller ,
Selin Kocalar ,
Rachel Oshiro ,
Kira S. Makarova ,
Rhiannon K. Macrae ,
Eugene V. Koonin ,
Feng Zhang
Uncovering the functional diversity of rare CRISPR-Cas systems with deep terascale clustering
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Han Altae-Tran,
Sergey A. Shmakov,
Kira S. Makarova ,
Yuri I. Wolf ,
Soumya Kannan,
Feng Zhang ,
Eugene V. Koonin
,
Yuri I. Wolf ,
Soumya Kannan,
Feng Zhang ,
Eugene V. Koonin
Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12
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2022
Kazuki Kato ,
Sae Okazaki ,
Cian Schmitt-Ulms ,
Kaiyi Jiang ,
Wenyuan Zhou,
Junichiro Ishikawa ,
Yukari Isayama,
Shungo Adachi ,
Tomohiro Nishizawa ,
Kira S. Makarova ,
Eugene V. Koonin ,
Omar O. Abudayyeh ,
Jonathan S. Gootenberg ,
Hiroshi Nishimasu
,
Sae Okazaki ,
Cian Schmitt-Ulms ,
Kaiyi Jiang ,
Wenyuan Zhou,
Junichiro Ishikawa ,
Yukari Isayama,
Shungo Adachi ,
Tomohiro Nishizawa ,
Kira S. Makarova ,
Eugene V. Koonin ,
Omar O. Abudayyeh ,
Jonathan S. Gootenberg ,
Hiroshi Nishimasu
RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease
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2021
Han Altae-Tran ,
Soumya Kannan ,
F. Esra Demircioglu ,
F. Esra Demircioglu,
Rachel Oshiro ,
Suchita P. Nety ,
Luke J. McKay ,
Mensur Dlakić ,
William P. Inskeep ,
Kira S. Makarova ,
Rhiannon K. Macrae ,
Eugene V. Koonin ,
Feng Zhang
,
Soumya Kannan ,
F. Esra Demircioglu ,
F. Esra Demircioglu,
Rachel Oshiro ,
Suchita P. Nety ,
Luke J. McKay ,
Mensur Dlakić ,
William P. Inskeep ,
Kira S. Makarova ,
Rhiannon K. Macrae ,
Eugene V. Koonin ,
Feng Zhang
The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases
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Soumya Kannan ,
Han Altae-Tran,
Xin Jin ,
Victoria J. Madigan ,
Rachel Oshiro ,
Kira S. Makarova ,
Eugene V. Koonin ,
Feng Zhang
,
Han Altae-Tran,
Xin Jin ,
Victoria J. Madigan ,
Rachel Oshiro ,
Kira S. Makarova ,
Eugene V. Koonin ,
Feng Zhang
Compact RNA editors with small Cas13 proteins
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Ayal B. Gussow ,
Allyson E. Park,
Adair L. Borges ,
Sergey A. Shmakov,
Kira S. Makarova ,
Yuri I. Wolf ,
Joseph Bondy-Denomy,
Eugene V. Koonin
,
Allyson E. Park,
Adair L. Borges ,
Sergey A. Shmakov,
Kira S. Makarova ,
Yuri I. Wolf ,
Joseph Bondy-Denomy,
Eugene V. Koonin
Machine-learning approach expands the repertoire of anti-CRISPR protein families
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2019
Jonathan Strecker ,
Alim Ladha ,
Zachary Gardner ,
Jonathan L. Schmid-Burgk ,
Kira S. Makarova ,
Eugene V. Koonin ,
Feng Zhang
,
Alim Ladha ,
Zachary Gardner ,
Jonathan L. Schmid-Burgk ,
Kira S. Makarova ,
Eugene V. Koonin ,
Feng Zhang
RNA-guided DNA insertion with CRISPR-associated transposases
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