All papers authored by Eugene Koonin
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Soumya Kannan ,
Anthony J. Suberski,
Kepler S. Mears,
F. Esra Demircioglu ,
Lukas Moeller ,
Selin Kocalar ,
Rachel Oshiro ,
Kira S. Makarova ,
Rhiannon K. Macrae ,
Eugene V. Koonin ,
Feng Zhang
Uncovering the functional diversity of rare CRISPR-Cas systems with deep terascale clustering
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Yuri I. Wolf ,
Soumya Kannan,
Feng Zhang ,
Eugene V. Koonin
Diversity, evolution, and classification of the RNA-guided nucleases TnpB and Cas12
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Junya Abe,
Scott Adkins ,
Sergey V. Alkhovsky ,
Tatjana Avšič-Županc ,
María A. Ayllón ,
Justin Bahl ,
Anne Balkema-Buschmann ,
Matthew J. Ballinger ,
Virendra Kumar Baranwal ,
Martin Beer ,
Nicolas Bejerman ,
Éric Bergeron ,
Nadine Biedenkopf ,
Carol D. Blair
and 172 other authors
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Sae Okazaki ,
Cian Schmitt-Ulms ,
Kaiyi Jiang ,
Wenyuan Zhou,
Junichiro Ishikawa ,
Yukari Isayama,
Shungo Adachi ,
Tomohiro Nishizawa ,
Kira S. Makarova ,
Eugene V. Koonin ,
Omar O. Abudayyeh ,
Jonathan S. Gootenberg ,
Hiroshi Nishimasu
RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease
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Nash D. Rochman ,
Yuri I. Wolf ,
Guilhem Faure ,
Feng Zhang ,
Eugene V. Koonin
Human pathogenic RNA viruses establish noncompeting lineages by occupying independent niches
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Soumya Kannan ,
F. Esra Demircioglu ,
F. Esra Demircioglu,
Rachel Oshiro ,
Suchita P. Nety ,
Luke J. McKay ,
Mensur Dlakić ,
William P. Inskeep ,
Kira S. Makarova ,
Rhiannon K. Macrae ,
Eugene V. Koonin ,
Feng Zhang
The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases
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Svetlana A. Shabalina ,
Anna Mamaeva,
Andrey Knyazev,
Anna Glushkevich,
Irina Lyapina,
Rustam Ziganshin,
Sergey Kovalchuk ,
Daria Kharlampieva,
Vassili Lazarev,
Michael Taliansky,
Eugene V Koonin
A vast pool of lineage-specific microproteins encoded by long non-coding RNAs in plants
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Han Altae-Tran,
Xin Jin ,
Victoria J. Madigan ,
Rachel Oshiro ,
Kira S. Makarova ,
Eugene V. Koonin ,
Feng Zhang
Compact RNA editors with small Cas13 proteins
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Yuri I. Wolf ,
Guilhem Faure ,
Pascal Mutz ,
Feng Zhang ,
Eugene V. Koonin
Ongoing global and regional adaptive evolution of SARS-CoV-2
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Alexey Alekseev,
Kirill Kovalev,
Vladan Rankovic ,
Taras Balandin,
Dmytro Soloviov ,
Dmitry Bratanov,
Ekaterina Savelyeva,
Elizaveta Podolyak,
Dmytro Volkov ,
Svetlana Vaganova,
Roman Astashkin,
Igor Chizhov,
Natalia Yutin,
Maksim Rulev
and 19 other authors
Viral rhodopsins 1 are an unique family of light-gated cation channels
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Allyson E. Park,
Adair L. Borges ,
Sergey A. Shmakov,
Kira S. Makarova ,
Yuri I. Wolf ,
Joseph Bondy-Denomy,
Eugene V. Koonin
Machine-learning approach expands the repertoire of anti-CRISPR protein families
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Iris Barshack,
Christopher Barbieri,
Paola Gasperini,
Himisha Beltran,
Faltas Bm,
Bishoy M. Faltas,
Rubin Ma,
Mark A. Rubin
and 5 other authors
Proteomic and genomic signatures of repeat instability in cancer and adjacent normal tissues
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Jennah Dharamshi,
Felix Homa,
Katarzyna Zaremba-Niedwiedzka,
Anja Spang,
Yuri I. Wolf,
Eugene V. Koonin ,
Thijs J. G. Ettema
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Jonathan Schmid-Burgk ,
Bernd Zetsche,
Linyi Gao ,
Kira S. Makarova,
Eugene V. Koonin ,
Feng Zhang
Engineering of CRISPR-Cas12b for human genome editing
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Pasha Apontes,
Yasmin L. Hurd,
William M. Byne,
Eugene V. Koonin ,
Michael Wegner ,
Eran A. Mukamel ,
Stella Dracheva
A unique role for DNA (hydroxy)methylation in epigenetic regulation of human inhibitory neurons
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Cellular origin of the viral capsid-like bacterial microcompartments
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