All papers authored by Curtis Huttenhower
Refreshing results…
2023
Raaj S. Mehta,
Jared R. Mayers 
,
Yancong Zhang ,
Amrisha Bhosle,
Nathaniel R. Glasser ,
Long H. Nguyen ,
Wenjie Ma,
Sena Bae,
Tobyn Branck,
Kijun Song ,
Luke Sebastian,
Julian Avila Pacheco ,
Hyuk-Soo Seo ,
Clary Clish ,
Sirano Dhe-Paganon
and 5 other authors
,
Yancong Zhang ,
Amrisha Bhosle,
Nathaniel R. Glasser ,
Long H. Nguyen ,
Wenjie Ma,
Sena Bae,
Tobyn Branck,
Kijun Song ,
Luke Sebastian,
Julian Avila Pacheco ,
Hyuk-Soo Seo ,
Clary Clish ,
Sirano Dhe-Paganon
and 5 other authors
Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease
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Katherine M. Kennedy ,
Marcus C. de Goffau ,
Maria Elisa Perez-Muñoz ,
Marie-Claire Arrieta ,
Fredrik Bäckhed,
Peer Bork ,
Thorsten Braun ,
Frederic D. Bushman ,
Joel Dore ,
Willem M. de Vos,
Ashlee M. Earl ,
Jonathan A. Eisen ,
Michal A. Elovitz ,
Stephanie C. Ganal-Vonarburg ,
Michael G. Gänzle
and 31 other authors
,
Marcus C. de Goffau ,
Maria Elisa Perez-Muñoz ,
Marie-Claire Arrieta ,
Fredrik Bäckhed,
Peer Bork ,
Thorsten Braun ,
Frederic D. Bushman ,
Joel Dore ,
Willem M. de Vos,
Ashlee M. Earl ,
Jonathan A. Eisen ,
Michal A. Elovitz ,
Stephanie C. Ganal-Vonarburg ,
Michael G. Gänzle
and 31 other authors
Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies
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2022
Hannah VanEvery ,
Eric A. Franzosa ,
Long H. Nguyen ,
Curtis Huttenhower
,
Eric A. Franzosa ,
Long H. Nguyen ,
Curtis Huttenhower
Microbiome epidemiology and association studies in human health
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Donggi Paik ,
Yancong Zhang ,
Lina Yao ,
Y. Zhang,
Sena Bae,
Gabriel D. D’Agostino,
Minghao Zhang,
Eunha Kim ,
Eric A. Franzosa ,
Julian Avila-Pacheco ,
Jordan E. Bisanz ,
Christopher K. Rakowski,
Hera Vlamakis ,
Ramnik J. Xavier ,
Peter J. Turnbaugh
and 7 other authors
,
Yancong Zhang ,
Lina Yao ,
Y. Zhang,
Sena Bae,
Gabriel D. D’Agostino,
Minghao Zhang,
Eunha Kim ,
Eric A. Franzosa ,
Julian Avila-Pacheco ,
Jordan E. Bisanz ,
Christopher K. Rakowski,
Hera Vlamakis ,
Ramnik J. Xavier ,
Peter J. Turnbaugh
and 7 other authors
Human gut bacteria produce ΤΗ17-modulating bile acid metabolites
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2021
Christine N. Spencer ,
Jennifer L. McQuade ,
Vancheswaran Gopalakrishnan ,
John A. McCulloch ,
Marie Vetizou ,
Alexandria P. Cogdill ,
Md A. Wadud Khan ,
Xiaotao Zhang ,
Michael G. White ,
Christine B. Peterson ,
Matthew C. Wong,
Golnaz Morad ,
Theresa Rodgers ,
Jonathan H. Badger ,
Beth A. Helmink
and 79 other authors
,
Jennifer L. McQuade ,
Vancheswaran Gopalakrishnan ,
John A. McCulloch ,
Marie Vetizou ,
Alexandria P. Cogdill ,
Md A. Wadud Khan ,
Xiaotao Zhang ,
Michael G. White ,
Christine B. Peterson ,
Matthew C. Wong,
Golnaz Morad ,
Theresa Rodgers ,
Jonathan H. Badger ,
Beth A. Helmink
and 79 other authors
Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response
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Himel Mallick ,
Ali Rahnavard ,
Lauren J. McIver ,
Siyuan Ma ,
Siyuan,
Yancong Zhang ,
Long H. Nguyen ,
Timothy L. Tickle ,
George Weingart,
Boyu Ren ,
Emma H. Schwager ,
Suvo Chatterjee,
Kelsey N. Thompson ,
Jeremy E. Wilkinson ,
Ayshwarya Subramanian
and 6 other authors
,
Ali Rahnavard ,
Lauren J. McIver ,
Siyuan Ma ,
Siyuan,
Yancong Zhang ,
Long H. Nguyen ,
Timothy L. Tickle ,
George Weingart,
Boyu Ren ,
Emma H. Schwager ,
Suvo Chatterjee,
Kelsey N. Thompson ,
Jeremy E. Wilkinson ,
Ayshwarya Subramanian
and 6 other authors
Multivariable association discovery in population-scale meta-omics studies
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Dong D. Wang,
Long H. Nguyen ,
Yanping Li ,
Yan Yan,
Wenjie Ma ,
Ehud Rinott ,
Kerry L. Ivey,
Iris Shai,
Walter C. Willett,
Frank B. Hu,
Eric B. Rimm,
Meir J. Stampfer,
Andrew T. Chan ,
Curtis Huttenhower
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,
Yanping Li ,
Yan Yan,
Wenjie Ma ,
Ehud Rinott ,
Kerry L. Ivey,
Iris Shai,
Walter C. Willett,
Frank B. Hu,
Eric B. Rimm,
Meir J. Stampfer,
Andrew T. Chan ,
Curtis Huttenhower
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Francesco Asnicar ,
Sarah E. Berry ,
Ana M. Valdes ,
Long H. Nguyen ,
Gianmarco Piccinno ,
David A. Drew ,
Emily Leeming,
Rachel Gibson ,
Caroline Le Roy ,
Haya Al Khatib,
Lucy Francis ,
Mohsen Mazidi,
Olatz Mompeo,
Mireia Valles-Colomer ,
Adrian Tett
and 24 other authors
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,
Sarah E. Berry ,
Ana M. Valdes ,
Long H. Nguyen ,
Gianmarco Piccinno ,
David A. Drew ,
Emily Leeming,
Rachel Gibson ,
Caroline Le Roy ,
Haya Al Khatib,
Lucy Francis ,
Mohsen Mazidi,
Olatz Mompeo,
Mireia Valles-Colomer ,
Adrian Tett
and 24 other authors
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2020
Caroline M. Mitchell ,
Chiara Mazzoni,
Larson Hogstrom,
Allison Bryant,
Agnes Bergerat,
Avital Cher,
Shawna Pochan,
Penelope Herman,
Maureen Carrigan,
Karen Sharp,
Curtis Huttenhower ,
Eric S. Lander,
Hera Vlamakis ,
Ramnik J. Xavier,
Moran Yassour
,
Chiara Mazzoni,
Larson Hogstrom,
Allison Bryant,
Agnes Bergerat,
Avital Cher,
Shawna Pochan,
Penelope Herman,
Maureen Carrigan,
Karen Sharp,
Curtis Huttenhower ,
Eric S. Lander,
Hera Vlamakis ,
Ramnik J. Xavier,
Moran Yassour
Delivery Mode Affects Stability of Early Infant Gut Microbiota
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Matthew R. Henn ,
Edward J. O’Brien,
Liyang Diao,
Brian G. Feagan,
William J. Sandborn,
Curtis Huttenhower ,
Jennifer R. Wortman ,
Barbara H. McGovern ,
Sherry Wang-Weigand,
David I. Lichter,
Meghan Chafee ,
Chris B. Ford ,
Patricia Bernardo,
Peng Zhao,
Sheri Simmons
and 6 other authors
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,
Edward J. O’Brien,
Liyang Diao,
Brian G. Feagan,
William J. Sandborn,
Curtis Huttenhower ,
Jennifer R. Wortman ,
Barbara H. McGovern ,
Sherry Wang-Weigand,
David I. Lichter,
Meghan Chafee ,
Chris B. Ford ,
Patricia Bernardo,
Peng Zhao,
Sheri Simmons
and 6 other authors
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2019
Nicholas A. Bokulich ,
Yoshiki Vazquez-Baeza,
Kyo Bin Kang ,
Christian C. Abnet ,
Gabriel A. Al-Ghalith ,
Harriet Alexander,
Eric J. Alm ,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai ,
Jordan E. Bisanz ,
Kyle Bittinger,
Evan Bolyen ,
Asker Brejnrod,
Colin J. Brislawn
and 99 other authors
,
Yoshiki Vazquez-Baeza,
Kyo Bin Kang ,
Christian C. Abnet ,
Gabriel A. Al-Ghalith ,
Harriet Alexander,
Eric J. Alm ,
Manimozhiyan Arumugam ,
Francesco Asnicar ,
Yang Bai ,
Jordan E. Bisanz ,
Kyle Bittinger,
Evan Bolyen ,
Asker Brejnrod,
Colin J. Brislawn
and 99 other authors
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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Kathleen W. Dantzler ,
Siyuan Ma,
Priscilla Ngotho ,
Will J. R. Stone,
Dingyin Tao ,
Sanna Rijpma ,
Mariana De Niz,
Sandra K. Nilsson Bark,
Matthijs M. Jore,
Tonke K. Raaijmakers,
Angela M. Early,
Ceereena Ubaida-Mohien,
Leandro Lemgruber ,
Joseph J. Campo ,
Andy A. Teng
and 16 other authors
,
Siyuan Ma,
Priscilla Ngotho ,
Will J. R. Stone,
Dingyin Tao ,
Sanna Rijpma ,
Mariana De Niz,
Sandra K. Nilsson Bark,
Matthijs M. Jore,
Tonke K. Raaijmakers,
Angela M. Early,
Ceereena Ubaida-Mohien,
Leandro Lemgruber ,
Joseph J. Campo ,
Andy A. Teng
and 16 other authors
Naturally acquired immunity against immature Plasmodium falciparum gametocytes
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Eric A. Franzosa ,
Alexandra Sirota-Madi,
Julian Avila-Pacheco ,
Nadine Fornelos,
Henry J. Haiser,
Stefan Reinker,
Tommi Vatanen ,
A. Brantley Hall,
Himel Mallick,
Lauren J. McIver,
Jenny S. Sauk,
Robin G. Wilson,
Betsy W. Stevens,
Justin M. Scott,
Kerry Pierce
and 12 other authors
,
Alexandra Sirota-Madi,
Julian Avila-Pacheco ,
Nadine Fornelos,
Henry J. Haiser,
Stefan Reinker,
Tommi Vatanen ,
A. Brantley Hall,
Himel Mallick,
Lauren J. McIver,
Jenny S. Sauk,
Robin G. Wilson,
Betsy W. Stevens,
Justin M. Scott,
Kerry Pierce
and 12 other authors
Author Correction: Gut microbiome structure and metabolic activity in inflammatory bowel disease
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Tommi Vatanen ,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
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,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
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Yael Haberman ,
Rebekah Karns,
Phillip J. Dexheimer ,
Melanie Schirmer,
Judith Somekh,
Ingrid Jurickova,
Tzipi Braun,
Elizabeth Novak,
Laura Bauman,
Margaret H. Collins ,
Angela Mo,
Michael J. Rosen,
Erin Bonkowski ,
Nathan Gotman,
Alison Marquis
and 27 other authors
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,
Rebekah Karns,
Phillip J. Dexheimer ,
Melanie Schirmer,
Judith Somekh,
Ingrid Jurickova,
Tzipi Braun,
Elizabeth Novak,
Laura Bauman,
Margaret H. Collins ,
Angela Mo,
Michael J. Rosen,
Erin Bonkowski ,
Nathan Gotman,
Alison Marquis
and 27 other authors
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2018
Tommi Vatanen ,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour ,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
Download from www.nature.com
,
Damian R. Plichta,
Juhi Somani,
Philipp C. Münch,
Timothy D. Arthur,
Andrew Brantley Hall,
Sabine Rudolf,
Edward J. Oakeley,
Xiaobo Ke,
Rachel A. Young,
Henry J. Haiser,
Raivo Kolde,
Moran Yassour ,
Kristiina Luopajärvi,
Heli Siljander
and 13 other authors
Download from www.nature.com
Eric A. Franzosa ,
Alexandra Sirota-Madi,
Julian Avila-Pacheco ,
Nadine Fornelos,
Henry J. Haiser,
Stefan Reinker,
Tommi Vatanen ,
A. Brantley Hall,
Himel Mallick,
Lauren J. McIver,
Jenny S. Sauk,
Robin G. Wilson,
Betsy W. Stevens,
Justin M. Scott,
Kerry Pierce
and 12 other authors
,
Alexandra Sirota-Madi,
Julian Avila-Pacheco ,
Nadine Fornelos,
Henry J. Haiser,
Stefan Reinker,
Tommi Vatanen ,
A. Brantley Hall,
Himel Mallick,
Lauren J. McIver,
Jenny S. Sauk,
Robin G. Wilson,
Betsy W. Stevens,
Justin M. Scott,
Kerry Pierce
and 12 other authors
Gut microbiome structure and metabolic activity in inflammatory bowel disease
Download from www.nature.com
Raaj S. Mehta,
Galeb S. Abu-Ali ,
David A. Drew ,
Jason Lloyd-Price ,
Ayshwarya Subramanian ,
Paul Lochhead,
Amit D. Joshi,
Kerry L. Ivey,
Hamed Khalili,
Gordon T. Brown,
Casey DuLong,
Mingyang Song,
Long H. Nguyen ,
Himel Mallick ,
Eric B. Rimm
and 3 other authors
,
David A. Drew ,
Jason Lloyd-Price ,
Ayshwarya Subramanian ,
Paul Lochhead,
Amit D. Joshi,
Kerry L. Ivey,
Hamed Khalili,
Gordon T. Brown,
Casey DuLong,
Mingyang Song,
Long H. Nguyen ,
Himel Mallick ,
Eric B. Rimm
and 3 other authors
Stability of the human faecal microbiome in a cohort of adult men
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2017
Paul I. Costea ,
Falk Hildebrand ,
Manimozhiyan Arumugam,
Fredrik Bäckhed,
Martin J. Blaser ,
Frederic D. Bushman ,
Willem M. de Vos ,
S. Dusko Ehrlich,
Claire M. Fraser,
Masahira Hattori,
Curtis Huttenhower ,
Ian B. Jeffery,
Dan Knights,
James D. Lewis,
Ruth E. Ley
and 14 other authors
,
Falk Hildebrand ,
Manimozhiyan Arumugam,
Fredrik Bäckhed,
Martin J. Blaser ,
Frederic D. Bushman ,
Willem M. de Vos ,
S. Dusko Ehrlich,
Claire M. Fraser,
Masahira Hattori,
Curtis Huttenhower ,
Ian B. Jeffery,
Dan Knights,
James D. Lewis,
Ruth E. Ley
and 14 other authors
Enterotypes in the landscape of gut microbial community composition
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