The tomato genome sequence provides insights into fleshy fruit evolution

van Oeveren, Jan; van Schriek, Keygene N. V. Marco G. M.; de Heer, Peter; daPonte, Lorena; van Eijk, Michiel J. T.; van Haaren, Mark J. J.; del Carmen, Asunción Fernandez; van de Belt, Jose; van Haarst, Jan C.; van Staveren, Marjo J.; van Ham, Roeland C. H. J.; Zuñiga, Sheila; de Jong, Hans H.; Sato, Shusei; Tabata, Satoshi; Hirakawa, Hideki; Shirasawa, Kenta; Isobe, Sachiko; Kaneko, Takakazu; Nakamura, Yasukazu; Shibata, Daisuke; Egholm, Michael; Knight, James; Li, Changbao; Shuang, Yang; Xu, Xun; Pan, Shengkai; Liu, Xin; Pero, Francesca Dal; Ren, Yuanyuan; Wang, Jun; Dal Pero, Francesca; Todesco, Sara; Van Eck, J.; Gosselin, Joseph R.; Huang, Minyun; Van Eck, Joyce; Leto, Jonathan A.; Menda, Naama; Strickler, Susan; Mao, Linyong; Gao, Shan; Tecle, Isaak Y.; York, Thomas; Zheng, Yi; Vrebalov, Julia T.; Lee, JeMin; Zhong, Silin; Mueller, Lukas A.; Stiekema, Willem J.; Ribeca, Paolo; Yang, Wencai; Huang, Sanwen; Du, Yongchen; Zhang, Zhonghua; Gao, Jianchang; Guo, Yanmei; Wang, Xiaoxuan; Li, Ying; He, Jun; Li, Chuanyou; Zuo, Jianru; Ren, Jianfeng; Zhao, Jiuhai; Yan, Liuhua; Jiang, Hongling; Wang, Bao; Li, Hongshuang; Li, Zhenjun; McCombie, W. Richard; Fu, Fuyou; Han, Bin; Feng, Qi; Fan, Danlin; Wang, Ying; Ling, Hongqing; Xue, Yongbiao; Ware, Doreen; Richard McCombie, W.; Lippman, Zachary B.; Jiang, Ke; Pasternak, Shiran; Gelley, Laura; Van de Peer, Yves; Kramer, Melissa; Royer, Suzanne M.; Shearer, Lindsay A.; Stack, Stephen M.; Kumar Singh, Pradeep; Rose, Jocelyn K. C.; Xu, Yimin; Eannetta, Nancy; Matas, Antonio J.; Kumar Pal, Jitendra; McQuinn, Ryan; Tanksley, Steven D.; Guigó, Roderic; Rombauts, Stephane; Kumar Mahato, Ajay; Fawcett, Jeffrey; Zamir, Dani; Raj Sharma, Tilak; Van De Peer, Y.; Liang, Chunbo; Kumar Singh, Nagendra; Spannagl, Manuel; Gundlach, Heidrun; Schiex, Thomas; Mayer, Klaus; Jia, Zhiqi; Zhang, Junhong; Ye, Zhibiao; Lopez-Cobollo, Rosa; Filippis, Ioannis; Dixit, I. Rekha; Singh, Manju; Fernandez del Carmen, Asunción; Singh, Archana; Pal, Jitendra Kumar; Pandit, Awadhesh; Singh, Pradeep Kumar; Mahato, Ajay Kumar; Dogra, Vivek; Gaikwad, Kishor; Sharma, Tilak Raj; Mohapatra, Trilochan; Singh, Nagendra Kumar; Rothan, Christophe; Noirot, Céline; Klopp, Christophe; Delalande, Corinne; Mariette, Jérôme; Frasse, Pierre; Vautrin, Sonia; Jong, H. de; Zouine, T. Mohamed; Latché, Alain; Rousseau, Christine; Regad, Farid; Pech, Jean-Claude; Philippot, Murielle; Pericard, Pierre; Osorio, Sonia; Del Carmen, A. F.; Jo, Sung-Hwan; Monforte, Antonio; Granell, Antonio; Fernandez-Muñoz, Rafael; Conte, Mariana; Lichtenstein, Gabriel; Hur, Cheol-Goo; De Bellis, Gianluca; Fuligni, Fabio; Asamizu, Erika; Peano, Clelia; Grandillo, Silvana; Termolino, Pasquale; Aoki, Koh; Pietrella, Marco; Joecker, Anika; Fantini, Elio; Bogden, Robert; Falcone, Giulia; Yano, Kentaro; Fiore, Alessia; Giuliano, Giovanni; Cheng, Shifeng; Lopez, Loredana; Facella, Paolo; Goebel, Ulrike; Albiero, Alessandro; Perrotta, Gaetano; Daddiego, Loretta; Orozco, B. Modesto; Buels, Robert M.; Pastor, Xavier; Bombarely, Aureliano; Torrents, David; Schijlen, Eliog W. M.; Van Schriek, M. G. M.; Feron, Richard M. C.; Van Oeveren, J.; Ham, R. C. H. J. van; De Heer, P.; Da Ponte, L.; Jacobs-Oomen, Saskia; Alioto, Tyler; Prins, Marcel; Van Eijk, M. J. T.; Janssen, Antoine; Van Haaren, J. J.; Kim, Jungeun; Dong Kim, Byung; Kwon, Suk-Yoon; Cheng, Zhukuan; Kim, Sangmi; Koo, Dal-Hoe; Lee, Sanghyeob; Zuniga, Sheila; Rico, Alain; Chen, Bingtang; Hallab, Asis; Yano, K.; Gebhardt, Christiane; Klee, Kathrin; Jöcker, Anika; Warfsmann, Jens; Yano, E.; Chia, Jer-Ming; Göbel, Ulrike; Kawamura, Shingo; Luis Goicoechea, Jose; Sherman, Jamie D.; Anderson, Lorinda K.; Fukuoka, Hiroyuki; Chang, Song-Bin; Negoro, Satomi; Datema, Erwin; Schoof, Heiko; Smit, Sandra; Camara, Francisco; Schijlen, Elio G. W. M.; Van Haarst, J. C.; Peters, Sander A.; Van Staveren, M. J.; Khurana, Paramjit; Van De Belt, J.; Henkens, Marleen H. C.; Bruggmann, Remy; Mooyman, Paul J. W.; Hesselink, Thamara; Bishop, Gerard J.; Van Ham, R. C. H. J.; Butcher, Sarah; Jiang, Guoyong; Droege, Marcus; Buchan, Daniel; Kang, Byung-Cheol; Abbott, James; Park, Minkyu; Kim, Byung Dong; Yeom, Seon-In; Lee, Yong-Hwan; Luisa Chiusano, Maria; Li, Guangcun; Kim, Seungill; Causse, Mathilde; Gao, Jianwei; D’Agostino, Nunzio; Liu, Yongsheng; Bellec, Arnaud; Huang, Shengxiong; Raffaella Ercolano, Maria; Fernandez-Pedrosa, Victoria; Berges, Hélène; Zuñ Iga, S.; Wang, Guoping; Dietrich, Robert A.; Rogers, Jane; Knapp, Sandra; Bouzayen, Mondher; Fei, Zhangjun; White, Ruth A.; Thannhauser, Theodore W.; Giovannoni, James J.; Carrari, Fernando; Gilbert, Louise; Gonzalez, F. Ramon; Yu, Yeisoo; Kudrna, David; Goicoechea, Jose Luis; Wissotski, Marina; Wing, Rod; Meyers, Blake C.; Bryan, Glenn; D’Angelo, Michela; Green, Pamela J.; Mathur, Saloni; Gurazada, Aishwarya Bala; Vyas, Shailendra; Solanke, Amolkumar U.; Cariaso, Mike; Kumar, Rahul; Gupta, Vikrant; Sharma, Arun K.; -HwanJo, S.; Khurana, Jitendra P.; Klein Lankhorst, René M.; Tyagi, Akhilesh K.; Khurana, Jitendra Paramjit; Dalmay, Tamas; Clouser, Christopher; Mohorianu, Irina; Walts, Brandon; Li, Jingping; Haarst, J. C. van; Guo, Hui; Wang, Yupeng; Lee, Tae-Ho; Bhutty, Sarita; Zhang, Dong; Chowdhury, Parul; Paterson, Andrew H.; Lankhorst, Rene M. Klein; Chattopadhyay, Debasis; Wang, Xiyin; Tang, Haibao; Staveren, M. J. van; D'Agostino, Nunzio; Ercolano, Maria Raffaella; Di Filippo, Miriam; Mooijman, P. J. W.; Traini, Alessandra; Sanseverino, Walter; Choi, Doil; Frusciante, Luigi; Seymour, Graham B.; Elharam, Mounir; Choi, Yang-Do; Fu, Ying; Hua, Axin; Kenton, Steven; Lewis, Jennifer; Collado, Carmen; Lin, Shaoping; Najar, Fares; Cade, Rebecca; Lai, Hongshing; Qin, Baifang; Shi, Ruihua; Botella, Miguel Angel; Qu, Chunmei; White, Douglas; White, James; Xing, Yanbo; Collura, Kristi; Yang, Keqin; Yi, Jing; Yao, Ziyun; Zhou, Liping; Roe, Bruce A.; Vezzi, Alessandro; D'Angelo, Michela; Zimbello, Rosanna; Schiavon, Riccardo; Chamala, Srikar; Rigobello, Chiara; Barbazuk, W. Brad; Vitulo, Nicola; Valle, Giorgio; Nelson, David R.; De Paoli, Emanuele; Szinay, Dora; Barone, Amalia; De Jong, H. H.; Chiusano, Maria Luisa; Visser, Richard G. F.; Lankhorst, R. K.; McLaren, Karen; Nicholson, Christine; Riddle, Claire; Gianese, Giulio; Caniato, Elisa; Campagna, Davide; Bin Chang, Song; Bai, Yuling; Angel Botella, Miguel; Bala Gurazada, Aishwarya; Beasley, Helen; Brad Barbazuk, W.; Belt, J. van de; Consortium, Tomato Genome

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W. Richard McCombie
van Oeveren et al., 2012

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Nature Research, Nature, 7400(485), p. 635-641, 2012

DOI: 10.1038/nature11119

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@article{van Oeveren2012,
  abstract = {Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium(2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.},
  author = {van Oeveren, Jan and van Schriek, Keygene N. V. Marco G. M. and de Heer, Peter and daPonte, Lorena and van Eijk, Michiel J. T. and van Haaren, Mark J. J. and del Carmen, Asunción Fernandez and van de Belt, Jose and van Haarst, Jan C. and van Staveren, Marjo J. and van Ham, Roeland C. H. J. and Zuñiga, Sheila and de Jong, Hans H. and Sato, Shusei and Tabata, Satoshi and Hirakawa, Hideki and Shirasawa, Kenta and Isobe, Sachiko and Kaneko, Takakazu and Nakamura, Yasukazu and Shibata, Daisuke and Egholm, Michael and Knight, James and Li, Changbao and Shuang, Yang and Xu, Xun and Pan, Shengkai and Liu, Xin and Pero, Francesca Dal and Ren, Yuanyuan and Wang, Jun and Dal Pero, Francesca and Todesco, Sara and Van Eck, J. and Gosselin, Joseph R. and Huang, Minyun and Van Eck, Joyce and Leto, Jonathan A. and Menda, Naama and Strickler, Susan and Mao, Linyong and Gao, Shan and Tecle, Isaak Y. and York, Thomas and Zheng, Yi and Vrebalov, Julia T. and Lee, JeMin and Zhong, Silin and Mueller, Lukas A. and Stiekema, Willem J. and Ribeca, Paolo and Yang, Wencai and Huang, Sanwen and Du, Yongchen and Zhang, Zhonghua and Gao, Jianchang and Guo, Yanmei and Wang, Xiaoxuan and Li, Ying and He, Jun and Li, Chuanyou and Zuo, Jianru and Ren, Jianfeng and Zhao, Jiuhai and Yan, Liuhua and Jiang, Hongling and Wang, Bao and Li, Hongshuang and Li, Zhenjun and McCombie, W. Richard and Fu, Fuyou and Han, Bin and Feng, Qi and Fan, Danlin and Wang, Ying and Ling, Hongqing and Xue, Yongbiao and Ware, Doreen and Richard McCombie, W. and Lippman, Zachary B. and Jiang, Ke and Pasternak, Shiran and Gelley, Laura and Van de Peer, Yves and Kramer, Melissa and Royer, Suzanne M. and Shearer, Lindsay A. and Stack, Stephen M. and Kumar Singh, Pradeep and Rose, Jocelyn K. C. and Xu, Yimin and Eannetta, Nancy and Matas, Antonio J. and Kumar Pal, Jitendra and McQuinn, Ryan and Tanksley, Steven D. and Guigó, Roderic and Rombauts, Stephane and Kumar Mahato, Ajay and Fawcett, Jeffrey and Zamir, Dani and Raj Sharma, Tilak and Van De Peer, Y. and Liang, Chunbo and Kumar Singh, Nagendra and Spannagl, Manuel and Gundlach, Heidrun and Schiex, Thomas and Mayer, Klaus and Jia, Zhiqi and Zhang, Junhong and Ye, Zhibiao and Lopez-Cobollo, Rosa and Filippis, Ioannis and Dixit, I. Rekha and Singh, Manju and Fernandez del Carmen, Asunción and Singh, Archana and Pal, Jitendra Kumar and Pandit, Awadhesh and Singh, Pradeep Kumar and Mahato, Ajay Kumar and Dogra, Vivek and Gaikwad, Kishor and Sharma, Tilak Raj and Mohapatra, Trilochan and Singh, Nagendra Kumar and Rothan, Christophe and Noirot, Céline and Klopp, Christophe and Delalande, Corinne and Mariette, Jérôme and Frasse, Pierre and Vautrin, Sonia and Jong, H. de and Zouine, T. Mohamed and Latché, Alain and Rousseau, Christine and Regad, Farid and Pech, Jean-Claude and Philippot, Murielle and Pericard, Pierre and Osorio, Sonia and Del Carmen, A. F. and Jo, Sung-Hwan and Monforte, Antonio and Granell, Antonio and Fernandez-Muñoz, Rafael and Conte, Mariana and Lichtenstein, Gabriel and Hur, Cheol-Goo and De Bellis, Gianluca and Fuligni, Fabio and Asamizu, Erika and Peano, Clelia and Grandillo, Silvana and Termolino, Pasquale and Aoki, Koh and Pietrella, Marco and Joecker, Anika and Fantini, Elio and Bogden, Robert and Falcone, Giulia and Yano, Kentaro and Fiore, Alessia and Giuliano, Giovanni and Cheng, Shifeng and Lopez, Loredana and Facella, Paolo and Goebel, Ulrike and Albiero, Alessandro and Perrotta, Gaetano and Daddiego, Loretta and Orozco, B. Modesto and Buels, Robert M. and Pastor, Xavier and Bombarely, Aureliano and Torrents, David and Schijlen, Eliog W. M. and Van Schriek, M. G. M. and Feron, Richard M. C. and Van Oeveren, J. and Ham, R. C. H. J. van and De Heer, P. and Da Ponte, L. and Jacobs-Oomen, Saskia and Alioto, Tyler and Prins, Marcel and Van Eijk, M. J. T. and Janssen, Antoine and Van Haaren, J. J. and Kim, Jungeun and Dong Kim, Byung and Kwon, Suk-Yoon and Cheng, Zhukuan and Kim, Sangmi and Koo, Dal-Hoe and Lee, Sanghyeob and Zuniga, Sheila and Rico, Alain and Chen, Bingtang and Hallab, Asis and Yano, K. and Gebhardt, Christiane and Klee, Kathrin and Jöcker, Anika and Warfsmann, Jens and Yano, E. and Chia, Jer-Ming and Göbel, Ulrike and Kawamura, Shingo and Luis Goicoechea, Jose and Sherman, Jamie D. and Anderson, Lorinda K. and Fukuoka, Hiroyuki and Chang, Song-Bin and Negoro, Satomi and Datema, Erwin and Schoof, Heiko and Smit, Sandra and Camara, Francisco and Schijlen, Elio G. W. M. and Van Haarst, J. C. and Peters, Sander A. and Van Staveren, M. J. and Khurana, Paramjit and Van De Belt, J. and Henkens, Marleen H. C. and Bruggmann, Remy and Mooyman, Paul J. W. and Hesselink, Thamara and Bishop, Gerard J. and Van Ham, R. C. H. J. and Butcher, Sarah and Jiang, Guoyong and Droege, Marcus and Buchan, Daniel and Kang, Byung-Cheol and Abbott, James and Park, Minkyu and Kim, Byung Dong and Yeom, Seon-In and Lee, Yong-Hwan and Luisa Chiusano, Maria and Li, Guangcun and Kim, Seungill and Causse, Mathilde and Gao, Jianwei and D’Agostino, Nunzio and Liu, Yongsheng and Bellec, Arnaud and Huang, Shengxiong and Raffaella Ercolano, Maria and Fernandez-Pedrosa, Victoria and Berges, Hélène and Zuñ Iga, S. and Wang, Guoping and Dietrich, Robert A. and Rogers, Jane and Knapp, Sandra and Bouzayen, Mondher and Fei, Zhangjun and White, Ruth A. and Thannhauser, Theodore W. and Giovannoni, James J. and Carrari, Fernando and Gilbert, Louise and Gonzalez, F. Ramon and Yu, Yeisoo and Kudrna, David and Goicoechea, Jose Luis and Wissotski, Marina and Wing, Rod and Meyers, Blake C. and Bryan, Glenn and D’Angelo, Michela and Green, Pamela J. and Mathur, Saloni and Gurazada, Aishwarya Bala and Vyas, Shailendra and Solanke, Amolkumar U. and Cariaso, Mike and Kumar, Rahul and Gupta, Vikrant and Sharma, Arun K. and -HwanJo, S. and Khurana, Jitendra P. and Klein Lankhorst, René M. and Tyagi, Akhilesh K. and Khurana, Jitendra Paramjit and Dalmay, Tamas and Clouser, Christopher and Mohorianu, Irina and Walts, Brandon and Li, Jingping and Haarst, J. C. van and Guo, Hui and Wang, Yupeng and Lee, Tae-Ho and Bhutty, Sarita and Zhang, Dong and Chowdhury, Parul and Paterson, Andrew H. and Lankhorst, Rene M. Klein and Chattopadhyay, Debasis and Wang, Xiyin and Tang, Haibao and Staveren, M. J. van and D'Agostino, Nunzio and Ercolano, Maria Raffaella and Di Filippo, Miriam and Mooijman, P. J. W. and Traini, Alessandra and Sanseverino, Walter and Choi, Doil and Frusciante, Luigi and Seymour, Graham B. and Elharam, Mounir and Choi, Yang-Do and Fu, Ying and Hua, Axin and Kenton, Steven and Lewis, Jennifer and Collado, Carmen and Lin, Shaoping and Najar, Fares and Cade, Rebecca and Lai, Hongshing and Qin, Baifang and Shi, Ruihua and Botella, Miguel Angel and Qu, Chunmei and White, Douglas and White, James and Xing, Yanbo and Collura, Kristi and Yang, Keqin and Yi, Jing and Yao, Ziyun and Zhou, Liping and Roe, Bruce A. and Vezzi, Alessandro and D'Angelo, Michela and Zimbello, Rosanna and Schiavon, Riccardo and Chamala, Srikar and Rigobello, Chiara and Barbazuk, W. Brad and Vitulo, Nicola and Valle, Giorgio and Nelson, David R. and De Paoli, Emanuele and Szinay, Dora and Barone, Amalia and De Jong, H. H. and Chiusano, Maria Luisa and Visser, Richard G. F. and Lankhorst, R. K. and McLaren, Karen and Nicholson, Christine and Riddle, Claire and Gianese, Giulio and Caniato, Elisa and Campagna, Davide and Bin Chang, Song and Bai, Yuling and Angel Botella, Miguel and Bala Gurazada, Aishwarya and Beasley, Helen and Brad Barbazuk, W. and Belt, J. van de and Consortium, Tomato Genome},
  doi = {10.1038/nature11119},
  journal = {Nature},
  month = {jan},
  pages = {635-641},
  title = {The tomato genome sequence provides insights into fleshy fruit evolution},
  url = {http://www.nature.com/articles/nature11119.pdf},
  volume = {485},
  year = {2012}
}

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The tomato genome sequence provides insights into fleshy fruit evolution

Journal article published in 2012 by Jan van Oeveren, Keygene N. V. Marco G. M. van Schriek, Peter de Heer, Lorena daPonte, Michiel J. T. van Eijk, Mark J. J. van Haaren, Asunción Fernandez del Carmen, Jose van de Belt, Jan C. van Haarst, Marjo J. van Staveren, Roeland C. H. J. van Ham, Sheila Zuñiga, Hans H. de Jong, Shusei Sato, Satoshi Tabata and other authors. Jan van Oeveren, Keygene N. V. Marco G. M. van Schriek, Peter de Heer, Lorena daPonte, Michiel J. T. van Eijk, Mark J. J. van Haaren, Asunción Fernandez del Carmen, Jose van de Belt, Jan C. van Haarst, Marjo J. van Staveren, Roeland C. H. J. van Ham, Sheila Zuñiga, Hans H. de Jong, Shusei Sato, Satoshi Tabata, Hideki Hirakawa, Kenta Shirasawa, Sachiko Isobe, Takakazu Kaneko, Yasukazu Nakamura, Daisuke Shibata, Michael Egholm, James Knight, Changbao Li, Yang Shuang, Xun Xu, Shengkai Pan, Xin Liu, Francesca Dal Pero, Yuanyuan Ren, Jun Wang, Francesca Dal Pero, Sara Todesco, J. Van Eck, Joseph R. Gosselin, Minyun Huang, Joyce Van Eck, Jonathan A. Leto, Naama Menda, Susan Strickler, Linyong Mao, Shan Gao, Isaak Y. Tecle, Thomas York, Yi Zheng, Julia T. Vrebalov, JeMin Lee, Silin Zhong, Lukas A. Mueller, Willem J. Stiekema, Paolo Ribeca, Wencai Yang, Sanwen Huang, Yongchen Du, Zhonghua Zhang, Jianchang Gao, Yanmei Guo, Xiaoxuan Wang, Ying Li, Jun He, Chuanyou Li, Jianru Zuo, Jianfeng Ren, Jiuhai Zhao, Liuhua Yan, Hongling Jiang, Bao Wang, Hongshuang Li, Zhenjun Li, W. Richard McCombie, Fuyou Fu, Bin Han, Qi Feng, Danlin Fan, Ying Wang, Hongqing Ling, Yongbiao Xue, Doreen Ware, W. Richard McCombie

, Zachary B. Lippman, Ke Jiang, Shiran Pasternak, Laura Gelley, Yves Van de Peer

, Melissa Kramer, Suzanne M. Royer, Lindsay A. Shearer, Stephen M. Stack, Pradeep Kumar Singh, Jocelyn K. C. Rose, Yimin Xu, Nancy Eannetta, Antonio J. Matas, Jitendra Kumar Pal, Ryan McQuinn, Steven D. Tanksley, Roderic Guigó, Stephane Rombauts, Ajay Kumar Mahato, Jeffrey Fawcett, Dani Zamir, Tilak Raj Sharma, Y. Van De Peer, Chunbo Liang, Nagendra Kumar Singh, Manuel Spannagl, Heidrun Gundlach, Thomas Schiex, Klaus Mayer, Zhiqi Jia, Junhong Zhang, Zhibiao Ye, Rosa Lopez-Cobollo, Ioannis Filippis, I. Rekha Dixit, Manju Singh, Asunción Fernandez del Carmen, Archana Singh, Jitendra Kumar Pal, Awadhesh Pandit, Pradeep Kumar Singh, Ajay Kumar Mahato, Vivek Dogra, Kishor Gaikwad, Tilak Raj Sharma, Trilochan Mohapatra, Nagendra Kumar Singh, Christophe Rothan, Céline Noirot, Christophe Klopp, Corinne Delalande, Jérôme Mariette, Pierre Frasse, Sonia Vautrin, H. de Jong, T. Mohamed Zouine, Alain Latché, Christine Rousseau, Farid Regad, Jean-Claude Pech, Murielle Philippot, Pierre Pericard, Sonia Osorio, A. F. Del Carmen, Sung-Hwan Jo, Antonio Monforte, Antonio Granell, Rafael Fernandez-Muñoz, Mariana Conte, Gabriel Lichtenstein, Cheol-Goo Hur, Gianluca De Bellis, Fabio Fuligni, Erika Asamizu, Clelia Peano, Silvana Grandillo, Pasquale Termolino, Koh Aoki, Marco Pietrella

, Anika Joecker, Elio Fantini, Robert Bogden, Giulia Falcone, Kentaro Yano, Alessia Fiore, Giovanni Giuliano, Shifeng Cheng, Loredana Lopez, Paolo Facella, Ulrike Goebel, Alessandro Albiero, Gaetano Perrotta, Loretta Daddiego, B. Modesto Orozco, Robert M. Buels, Xavier Pastor, Aureliano Bombarely

, David Torrents, Eliog W. M. Schijlen, M. G. M. Van Schriek, Richard M. C. Feron, J. Van Oeveren, R. C. H. J. van Ham, P. De Heer, L. Da Ponte, Saskia Jacobs-Oomen, Tyler Alioto

, Marcel Prins, M. J. T. Van Eijk, Antoine Janssen, J. J. Van Haaren, Jungeun Kim, Byung Dong Kim, Suk-Yoon Kwon, Zhukuan Cheng, Sangmi Kim, Dal-Hoe Koo, Sanghyeob Lee, Sheila Zuniga, Alain Rico, Bingtang Chen, Asis Hallab, K. Yano, Christiane Gebhardt, Kathrin Klee, Anika Jöcker, Jens Warfsmann, E. Yano, Jer-Ming Chia, Ulrike Göbel, Shingo Kawamura, Jose Luis Goicoechea, Jamie D. Sherman, Lorinda K. Anderson, Hiroyuki Fukuoka, Song-Bin Chang, Satomi Negoro, Erwin Datema, Heiko Schoof, Sandra Smit

, Francisco Camara, Elio G. W. M. Schijlen, J. C. Van Haarst, Sander A. Peters, M. J. Van Staveren, Paramjit Khurana, J. Van De Belt, Marleen H. C. Henkens, Remy Bruggmann, Paul J. W. Mooyman, Thamara Hesselink, Gerard J. Bishop, R. C. H. J. Van Ham, Sarah Butcher, Guoyong Jiang, Marcus Droege, Daniel Buchan, Byung-Cheol Kang, James Abbott

, Minkyu Park, Byung Dong Kim, Seon-In Yeom, Yong-Hwan Lee, Maria Luisa Chiusano, Guangcun Li, Seungill Kim, Mathilde Causse, Jianwei Gao, Nunzio D’Agostino, Yongsheng Liu, Arnaud Bellec, Shengxiong Huang, Maria Raffaella Ercolano, Victoria Fernandez-Pedrosa, Hélène Berges, S. Zuñ Iga, Guoping Wang, Robert A. Dietrich, Jane Rogers, Sandra Knapp, Mondher Bouzayen, Zhangjun Fei, Ruth A. White, Theodore W. Thannhauser, James J. Giovannoni, Fernando Carrari, Louise Gilbert, F. Ramon Gonzalez, Yeisoo Yu, David Kudrna, Jose Luis Goicoechea, Marina Wissotski, Rod Wing, Blake C. Meyers

, Glenn Bryan, Michela D’Angelo, Pamela J. Green, Saloni Mathur, Aishwarya Bala Gurazada, Shailendra Vyas, Amolkumar U. Solanke, Mike Cariaso, Rahul Kumar, Vikrant Gupta, Arun K. Sharma, S. -HwanJo, Jitendra P. Khurana, René M. Klein Lankhorst, Akhilesh K. Tyagi, Jitendra Paramjit Khurana, Tamas Dalmay, Christopher Clouser, Irina Mohorianu, Brandon Walts, Jingping Li, J. C. van Haarst, Hui Guo, Yupeng Wang, Tae-Ho Lee, Sarita Bhutty, Dong Zhang, Parul Chowdhury, Andrew H. Paterson, Rene M. Klein Lankhorst, Debasis Chattopadhyay, Xiyin Wang, Haibao Tang

, M. J. van Staveren, Nunzio D'Agostino, Maria Raffaella Ercolano, Miriam Di Filippo, P. J. W. Mooijman, Alessandra Traini, Walter Sanseverino, Doil Choi, Luigi Frusciante, Graham B. Seymour, Mounir Elharam, Yang-Do Choi, Ying Fu, Axin Hua, Steven Kenton, Jennifer Lewis, Carmen Collado, Shaoping Lin, Fares Najar, Rebecca Cade, Hongshing Lai, Baifang Qin, Ruihua Shi, Miguel Angel Botella, Chunmei Qu, Douglas White, James White, Yanbo Xing, Kristi Collura, Keqin Yang, Jing Yi, Ziyun Yao, Liping Zhou, Bruce A. Roe, Alessandro Vezzi, Michela D'Angelo, Rosanna Zimbello, Riccardo Schiavon, Srikar Chamala, Chiara Rigobello, W. Brad Barbazuk, Nicola Vitulo, Giorgio Valle, David R. Nelson, Emanuele De Paoli, Dora Szinay, Amalia Barone, H. H. De Jong, Maria Luisa Chiusano, Richard G. F. Visser, R. K. Lankhorst, Karen McLaren, Christine Nicholson, Claire Riddle, Giulio Gianese, Elisa Caniato, Davide Campagna, Song Bin Chang, Yuling Bai, Miguel Angel Botella, Aishwarya Bala Gurazada, Helen Beasley, W. Brad Barbazuk, J. van de Belt, Tomato Genome Consortium

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Tomato (Solanum lycopersicum) is a major crop plant and a model system for fruit development. Solanum is one of the largest angiosperm genera(1) and includes annual and perennial plants from diverse habitats. Here we present a high-quality genome sequence of domesticated tomato, a draft sequence of its closest wild relative, Solanum pimpinellifolium(2), and compare them to each other and to the potato genome (Solanum tuberosum). The two tomato genomes show only 0.6% nucleotide divergence and signs of recent admixture, but show more than 8% divergence from potato, with nine large and several smaller inversions. In contrast to Arabidopsis, but similar to soybean, tomato and potato small RNAs map predominantly to gene-rich chromosomal regions, including gene promoters. The Solanum lineage has experienced two consecutive genome triplications: one that is ancient and shared with rosids, and a more recent one. These triplications set the stage for the neofunctionalization of genes controlling fruit characteristics, such as colour and fleshiness.

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The tomato genome sequence provides insights into fleshy fruit evolution

Abstract