All papers authored by Tyler Alioto
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2023
Tyler S. Alioto 
,
Marta Gut ,
Bruno Kotska Rodiño-Janeiro ,
Fernando Cruz ,
Jèssica Gómez-Garrido ,
Juan Carlos Vázquez-Ucha ,
Caterina Mata ,
Regina Antoni ,
Ferran Briansó ,
Marc Dabad ,
Eloi Casals,
Matthew Ingham,
Miguel Álvarez-Tejado,
Germán Bou ,
Ivo G. Gut
Download from doi.org
,
Marta Gut ,
Bruno Kotska Rodiño-Janeiro ,
Fernando Cruz ,
Jèssica Gómez-Garrido ,
Juan Carlos Vázquez-Ucha ,
Caterina Mata ,
Regina Antoni ,
Ferran Briansó ,
Marc Dabad ,
Eloi Casals,
Matthew Ingham,
Miguel Álvarez-Tejado,
Germán Bou ,
Ivo G. Gut
Download from doi.org
2022
Jorge Arca-Suárez,
Bruno K. Rodiño-Janeiro ,
Astrid Pérez ,
Paula Guijarro-Sánchez ,
Juan C. Vázquez-Ucha ,
Fernando Cruz,
Jèssica Gómez-Garrido ,
Tyler S. Alioto ,
Miguel Álvarez-Tejado,
Marta Gut,
Ivo Gut,
Marina Oviaño,
Alejandro Beceiro ,
Germán Bou,
Irene Merino
and 25 other authors
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,
Astrid Pérez ,
Paula Guijarro-Sánchez ,
Juan C. Vázquez-Ucha ,
Fernando Cruz,
Jèssica Gómez-Garrido ,
Tyler S. Alioto ,
Miguel Álvarez-Tejado,
Marta Gut,
Ivo Gut,
Marina Oviaño,
Alejandro Beceiro ,
Germán Bou,
Irene Merino
and 25 other authors
Upload
2021
Julie Thomy,
Frederic Sanchez,
Marta Gut,
Gwenael Piganeau,
Sheree Yau ,
Fernando Cruz,
Tyler Alioto ,
Nigel Grimsley
Download from doi.org
,
Fernando Cruz,
Tyler Alioto ,
Nigel Grimsley
Download from doi.org
2015
Tyler S. Alioto ,
Ivo Buchhalter ,
Sophia Derdak,
Barbara Hutter ,
Matthew D. Eldridge,
Eivind Hovig ,
Lawrence E. Heisler,
Timothy A. Beck ,
Jared T. Simpson,
Laurie Tonon ,
Anne-Sophie Sertier,
Ann-Marie Patch ,
Natalie Jäger,
Philip Ginsbach,
Ruben Drews
and 69 other authors
,
Ivo Buchhalter ,
Sophia Derdak,
Barbara Hutter ,
Matthew D. Eldridge,
Eivind Hovig ,
Lawrence E. Heisler,
Timothy A. Beck ,
Jared T. Simpson,
Laurie Tonon ,
Anne-Sophie Sertier,
Ann-Marie Patch ,
Natalie Jäger,
Philip Ginsbach,
Ruben Drews
and 69 other authors
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
Download from www.nature.com
2013
ItalyJeltje van Baren,
Daniel R. Zerbino,
Michael Zhang,
Cole Trapnell,
Barbara Wold,
Armand Valsesia,
Thomas D. Wu,
David Weese,
Simon White,
Xiaowo Wang,
Jie Wu,
Chenghai Xue,
Thomas Wu,
Giorgio Valle,
Nicola Vitulo
and 75 other authors
Systematic evaluation of spliced alignment programs for RNA-seq data.
Download from www.nature.com
Núria Piqué,
Eleonora Aquilini,
Tyler Alioto ,
David Miñana-Galbis,
Juan M. Tomás
,
David Miñana-Galbis,
Juan M. Tomás
Genome Sequence of Plesiomonas shigelloides Strain 302-73 (Serotype O1)
Download from dx.doi.org
2012
Ian Dunham ,
Marijke J. van Baren,
Stephen C. J. Parker,
Anshul Kundaje,
Florencia Pauli,
Kate R. Rosenbloom,
Peter Sabo,
Alexias Safi,
Amartya Sanyal,
Noam Shoresh,
Charles B. Epstein,
Jeremy M. Simon,
Lingyun Song,
Seth Frietze,
Nathan D. Trinklein
and 558 other authors
,
Marijke J. van Baren,
Stephen C. J. Parker,
Anshul Kundaje,
Florencia Pauli,
Kate R. Rosenbloom,
Peter Sabo,
Alexias Safi,
Amartya Sanyal,
Noam Shoresh,
Charles B. Epstein,
Jeremy M. Simon,
Lingyun Song,
Seth Frietze,
Nathan D. Trinklein
and 558 other authors
An integrated encyclopedia of DNA elements in the human genome
Download from www.nature.com
Sarah Djebali,
Carrie A. Davis,
Angelika Merkel,
Alex Dobin,
Timo Lassmann ,
Ali M. Mortazavi,
Andrea Tanzer ,
Julien Lagarde,
Wei Lin,
Felix Schlesinger,
Chenghai Xue,
Georgi K. Marinov,
Jainab Khatun,
Brian A. Williams,
Chris Zaleski
and 70 other authors
,
Ali M. Mortazavi,
Andrea Tanzer ,
Julien Lagarde,
Wei Lin,
Felix Schlesinger,
Chenghai Xue,
Georgi K. Marinov,
Jainab Khatun,
Brian A. Williams,
Chris Zaleski
and 70 other authors
Landscape of transcription in human cells
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Jordi Garcia-Mas,
Andrej Benjak,
Walter Sanseverino,
Michael Bourgeois,
Gisela Mir,
V. M. Gonzalez,
Víctor M. González,
Elizabeth Hénaff,
F. Camara,
Francisco Câmara,
Luca Cozzuto,
Ernesto Lowy,
Tyler Alioto ,
Salvador Capella-Gutiérrez,
Jose Blanca
and 23 other authors
,
Salvador Capella-Gutiérrez,
Jose Blanca
and 23 other authors
The genome of melon (Cucumis melo L.)
Download from www.pnas.org
Jan van Oeveren,
Keygene N. V. Marco G. M. van Schriek,
Peter de Heer,
Lorena daPonte,
Michiel J. T. van Eijk,
Mark J. J. van Haaren,
Asunción Fernandez del Carmen,
Jose van de Belt,
Jan C. van Haarst,
Marjo J. van Staveren,
Roeland C. H. J. van Ham,
Sheila Zuñiga,
Hans H. de Jong,
Shusei Sato,
Satoshi Tabata
and 357 other authors
The tomato genome sequence provides insights into fleshy fruit evolution
Download from www.nature.com
2011
Jonathan M. Mudge,
Adam Frankish ,
Julio Fernandez-Banet ,
Tyler Alioto ,
Thomas Derrien,
Cédric Howald,
Alexandre Reymond,
Roderic Guigó,
Tim Hubbard,
Jennifer Harrow
,
Julio Fernandez-Banet ,
Tyler Alioto ,
Thomas Derrien,
Cédric Howald,
Alexandre Reymond,
Roderic Guigó,
Tim Hubbard,
Jennifer Harrow
The Origins, Evolution, and Functional Potential of Alternative Splicing in Vertebrates
Download from academic.oup.com
2009
Jennifer Harrow,
Alinda Nagy,
Alexandre Reymond,
Tyler Alioto ,
Laszlo Patthy,
Stylianos E. Antonarakis,
Roderic Guigó
,
Laszlo Patthy,
Stylianos E. Antonarakis,
Roderic Guigó
Identifying protein-coding genes in genomic sequences
Download from dx.doi.org
2007
S. van Calcar,
Zhengdong D. Zhang,
Man Yu1,
Sarah Wilcox,
Man Yu,
Deyou Y. Zheng,
XiaoDong Zhao,
Carine Wyss,
As S. Zweig,
Jiaqian Q. Wu,
Xiaoling Xueqing Zhang,
X. Q. Zhang,
Mc C. Zody,
Kris A. Wetterstrand,
Simon Whelan
and 327 other authors
Download from www.nature.com
France Denoeud ,
Philipp Kapranov,
Catherine Ucla,
Adam Frankish ,
Robert Castelo,
Jorg Drenkow,
Julien Lagarde,
Tyler Alioto ,
Caroline Manzano,
Jacqueline Chrast,
Sujit Dike,
Carine Wyss,
Charlotte N. Henrichsen,
Nancy Holroyd,
Mark C. Dickson
and 11 other authors
Download from genome.cshlp.org
,
Philipp Kapranov,
Catherine Ucla,
Adam Frankish ,
Robert Castelo,
Jorg Drenkow,
Julien Lagarde,
Tyler Alioto ,
Caroline Manzano,
Jacqueline Chrast,
Sujit Dike,
Carine Wyss,
Charlotte N. Henrichsen,
Nancy Holroyd,
Mark C. Dickson
and 11 other authors
Download from genome.cshlp.org
Tyler S. Alioto
U12DB: a database of orthologous U12-type spliceosomal introns
Download from doi.org
2003
Masanori Takehashi,
Tyler Alioto ,
Todd Stedeford,
Amanda S. Persad,
Marek Banasik,
Eliezer Masliah,
Seigo Tanaka,
Kunihiro Ueda
,
Todd Stedeford,
Amanda S. Persad,
Marek Banasik,
Eliezer Masliah,
Seigo Tanaka,
Kunihiro Ueda
Septin 3 Gene Polymorphism in Alzheimer’s Disease
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