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All papers authored by W. Richard McCombie

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2023 Armin Scheben

ORCID

, Olivia Mendivil Ramos, Olivia Mendivil Ramos

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, Melissa Kramer

ORCID

ORCID

, Sara Oppenheim

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, Daniel J. Becker

ORCID

, Michael C. Schatz

ORCID

, Nancy B. Simmons

ORCID

ORCID

, W. Richard McCombie, W. Richard McCombie

ORCID

, Susanne Pfeifer

Long-Read Sequencing Reveals Rapid Evolution of Immunity- and Cancer-Related Genes in Bats

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2019 Sergey Aganezov

ORCID

, Sara Goodwin, Rachel M. Sherman

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, Fritz J. Sedlazeck

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, Gayatri Arun, Sonam Bhatia, Isac Lee, Melanie Kirsche, Robert Wappel, Melissa Kramer, Karen Kostroff, David L. Spector

ORCID

ORCID

, W. Richard McCombie

ORCID

, Michael C. Schatz

ORCID

Comprehensive analysis of structural variants in breast cancer genomes using single molecule sequencing

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2014 Clícia Grativol, Michael Regulski, Marcelo Bertalan, W. Richard McCombie

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, W. Richard McCombie, Felipe Rodrigues da Silva, Adhemar Zerlotini Neto, Adhemar Zerlotini Neto, Renato Vicentini, Laurent Farinelli, Adriana Silva Hemerly, Robert A. Martienssen, Paulo Cavalcanti Gomes Ferreira

Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum

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Shane E. McCarthy, Jesse Gillis, Melissa Kramer, Jayon Lihm, Seungtai Yoon, Yael Berstein, Meeta Mistry, Paul Pavlidis, Rebecca Solomon, Elena Ghiban, Eric Antoniou, Eric Kelleher, Carol O’Brien, Gary Donohoe, Michael Gill and 4 other authors

De novo Mutations in Schizophrenia Implicate Chromatin Remodeling and Support a Genetic Overlap with Autism and Intellectual Disability

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Shane E. McCarthy, W. Richard McCombie

ORCID

, Aiden Corvin

Unlocking the Treasure Trove: From Genes to Schizophrenia Biology

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D. J. Porteous, P. A. Thomson, J. K. Millar, K. L. Evans, W. Hennah

ORCID

, D. C. Soares, S. McCarthy, W. R. McCombie

ORCID

, S. J. Clapcote, C. Korth, N. J. Brandon, A. Sawa, A. Kamiya, J. C. Roder, S. M. Lawrie and 3 other authors

DISC1 as a genetic risk factor for schizophrenia and related major mental illness: Response to Sullivan

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Jianchao Yao, Kelvin Xi Zhang, Melissa Kramer, Matteo Pellegrini, W. Richard McCombie

ORCID

, W. Richard McCombie

FamAnn: An Automated Variant Annotation Pipeline to Facilitate Target Discovery for Family-based Sequencing Studies

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2013 Patrick May

ORCID

, Will Liao, Yijin Wu, Bin Shuai, W. Richard McCombie

ORCID

, Michael Q. Zhang, Qiong A. Liu

The effects of carbon dioxide and temperature on microRNA expression in Arabidopsis development

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Michael Regulski, Zhenyuan Lu, Jude Kendall, Mark T. A. Donoghue, Jon Reinders, Victor Llaca, Stephane Deschamps, Andrew Smith, Dan Levy, W. Richard McCombie

ORCID

, W. Richard McCombie, Scott Tingey, Antoni Rafalski, James Hicks, Doreen Ware and 1 other authors

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA

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P. A. Thomson, J. S. Parla, A. F. McRae, M. Kramer, K. Ramakrushnan, K. Ramakrishnan, J. Yao, D. C. Soares, S. McCarthy, S. W. Morris, L. Cardone, S. Cass, E. Ghiban, W. Hennah

ORCID

, K. L. Evans and 13 other authors

708 Common and 2010 rare DISC1 locus variants identified in 1542 subjects: analysis for association with psychiatric disorder and cognitive traits

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Xiao Xu, Yuanhao Zhang, Jennie Williams, Eric Antoniou, W. Richard McCombie

ORCID

, Song Wu, Wei Zhu, Nicholas O. Davidson, Paula Denoya, Ellen Li

Parallel comparison of Illumina RNA-Seq and Affymetrix microarray platforms on transcriptomic profiles generated from 5-aza-deoxy-cytidine treated HT-29 colon cancer cells and simulated datasets

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Sitharthan Kamalakaran, Vinay Varadan, Angel Janevski, Nilanjana Banerjee, David Tuck, W. Richard McCombie

ORCID

, Nevenka Dimitrova, Lyndsay N. Harris

Translating next generation sequencing to practice: Opportunities and necessary steps

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Ming-Cheng Luo, Yong Q. Gu, Frank M. You, Karin R. Deal, Yaqin, Yaqin Ma, Yuqin Hu, Naxin Huo, Yi Wang, Jirui Wang, Shiyong Chen, Chad M. Jorgensen, Yong Zhang, Patrick E. McGuire, Shiran Pasternak and 19 other authors

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

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Mm M. Streppel, S. Lata, M. DelaBastide, Ea A. Montgomery, Js S. Wang, Mi I. Canto, Am M. Macgregor-Das, S. Pai, Fhm H. M. Morsink, Gj J. Offerhaus, E. Antoniou, A. Maitra, Wr R. McCombie

ORCID

Next-generation sequencing of endoscopic biopsies identifies ARID1A as a tumor-suppressor gene in Barrett’s esophagus

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Yoshihiro Kawahara, Melissa de la Bastide, John P. Hamilton, Hiroyuki Kanamori, W. Richard McCombie

ORCID

, W. Richard McCombie, Shu Ouyang, David C. Schwartz, Tsuyoshi Tanaka, Jianzhong Wu, Shiguo Zhou, Kevin L. Childs

ORCID

, Rebecca M. Davidson, Haining Lin, Lina Quesada-Ocampo and 9 other authors

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

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Yun-Ching Chen, Hannah Carter, Jennifer Parla, Melissa Kramer, Fernando S. Goes, Mehdi Pirooznia

ORCID

, Peter P. Zandi, W. Richard McCombie

ORCID

, W. Richard McCombie, James B. Potash, Rachel Karchin

A Hybrid Likelihood Model for Sequence-Based Disease Association Studies

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Elena A. Vidal, Tomas C. Moyano, Gabriel Krouk, Manpreet S. Katari, Milos Tanurdzic, W. Richard McCombie, W. Richard McCombie

ORCID

, Gloria M. Coruzzi, Rodrigo A. Gutiérrez

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots

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Shilpi Paul, Alex Kuo, Thomas Schalch, Hannes Vogel, Leemor Joshua-Tor, W. Richard McCombie

ORCID

, W. Richard McCombie, Or Gozani, Molly Hammell, Alea A. Mills

Chd5 Requires PHD-Mediated Histone 3 Binding for Tumor Suppression

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2012 Sergey Koren, Michael C. Schatz, Brian P. Walenz, Jeffrey Martin, Jason T. Howard, Ganeshkumar Ganapathy, Zhong Wang, David A. Rasko, W. Richard McCombie

ORCID

, Erich D. Jarvis, Adam M. Phillippy

Hybrid error correction and de novo assembly of single-molecule sequencing reads

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