Yasset Perez-Riverol

Papers authored by Yasset Perez-Riverol

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2013 Teresa Núñez de Villavicencio-Díaz, Arielis Rodríguez-Ulloa, Osmany Guirola-Cruz, Yasset Perez-Riverol

Bioinformatics Tools for the Functional Interpretation of Quantitative Proteomics Results

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F. V. Leprevost

, D. B. Lima, J. Crestani, Y. Perez-Riverol

, N. Zanchin, V. C. Barbosa

, P. C. Carvalho

Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics

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Roberto Vera, Yasset Perez-Riverol

, Sonia Perez, Balázs Ligeti, Attila Kertész-Farkas, Sándor Pongor

JBioWH: an open-source Java framework for bioinformatics data integration

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Yasset Perez-Riverol

, Aniel Sanchez, Jesus Noda, Diogo Borges, Paulo Costa Carvalho, Rui Wang, Juan Antonio Vizcaíno

, Lazaro Hiram Betancourt, Yassel Ramos

, Gabriel Duarte, Fabio C. S. Nogueira

, Luis Javier Gonzalez, Gabriel Padron, David Lee Tabb, Henning Hermjakob and 2 other authors

HI-Bone: A Scoring System for Identifying Phenylisothiocyanate-Derivatized Peptides Based on Precursor Mass and High Intensity Fragment Ions

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Diogo Borges, Yasset Perez-Riverol

, Fabio C. S. Nogueira

, Gilberto B. Domont, Jesus Noda, Felipe da Veiga Leprevost

, Vladimir Besada, Felipe M. G. França

, Valmir C. Barbosa

, Aniel Sánchez, Paulo C. Carvalho

Effectively addressing complex proteomic search spaces with peptide spectrum matching

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Lazaro H. Betancourt, Pieter-Jan De Bock, An Staes, Evy Timmerman, Yasset Perez-Riverol

, Aniel Sanchez, Vladimir Besada, Luis Javier Gonzalez, Joël Vandekerckhove, Kris Gevaert

SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping

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Yasset Perez-Riverol

, Henning Hermjakob, Oliver Kohlbacher

, Lennart Martens

, David Creasy, Jürgen Cox, Felipe Leprevost

, Baozhen Paul Shan, Violeta I. Pérez-Nueno, Michal Blazejczyk, Marco Punta, Klemens Vierlinger, Pedro A. Valiente, Pedro A. Valienten, Kalet Leon

and 8 other authors

Computational proteomics pitfalls and challenges: HavanaBioinfo 2012 Workshop report

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2012 Juan Antonio Vizcaíno

, Richard G. Côté, R. G. Cote, Attila Csordas, José A. Dianes, Antonio Fabregat

, Joseph M. Foster, Johannes Griss

, Emanuele Alpi, Melih Birim, Javier Contell, Gavin O'Kelly, Gavin O’Kelly, Andreas Schoenegger, David Ovelleiro and 5 other authors

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

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Richard G. Cote, Richard G. Côté, Johannes Griss

, José A. Dianes, Rui Wang, James C. Wright, Henk Wp P. van den Toorn, Bas van Breukelen, Albert J. R. Heck

, Niels Hulstaert, Lennart Martens

, Florian Reisinger, Attila Csordas, David Ovelleiro, Yasset Perez-Rivevol

and 3 other authors

The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium*

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Yasset Perez-Riverol

, Roberto Vera, Yuliet Mazola, Alexis Musacchio, Alexis Mussachio

A Parallel Systematic-Monte Carlo Algorithm for exploring Conformational Space.

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Yordanka Masforrol, Jorge Fernández de-Cossío, Jeovanis Gil

, Luis Javier González, Yasset Pérez-Riverol

, Jorge Fernández-De-Cossío, Aniel Sánchez, Lázaro Hiram Betancourt, Hilda Elisa Garay, Ania Cabrales, Fernando Albericio, Hongqian Yang, Roman A. Zubarev, Vladimir Besada, Osvaldo Reyes Acosta

Introducing an Asp-Pro Linker in the Synthesis of Random One-Bead-One-Compound Hexapeptide Libraries Compatible with ESI-MS Analysis

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Yasset Perez-Riverol

, Enrique Audain, Aleli Millan, Yassel Ramos

, Aniel Sanchez, Juan Antonio Vizcaíno

, Rui Wang, Markus Müller

, Yoan J. Machado, Lazaro H. Betancourt, Luis J. González, Gabriel Padrón, Vladimir Besada

Isoelectric point optimization using peptide descriptors and support vector machines

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Rui Wang, Antonio Fabregat

, Daniel Ríos, David Ovelleir, David Ovelleiro, Joseph M. Foster, Richard G. Cote, Richard G. Côté, Johannes Griss

, Attila Csordas, Yasset Perez-Riverol

, Florian Reisinger, Henning Hermjakob, Lennart Martens

, Juan Antonio Vizcaíno

PRIDE Inspector: a tool to visualize and validate MS proteomics data

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Aniel Sanchez, Wei Sun, Jie Ma, Jie, Lazaro Betancourt, Jorge Fernandez de-Cossio, Gabriel Padron, Yasset Perez-Riverol

, Ying Jiang, Fuchu He, Luis Javier Gonzalez, Vladimir Besada

Selective isolation of multiply charged peptides: a confident strategy for protein identification using a linear trap quadrupole mass spectrometer

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2011 Lázaro H. Betancourt, Jorge Fernandez de Cossio, Aniel Sánchez, Yasset Pérez

, Jorge Fernandez de Cossio, Jeovanis Gil

, Patricia Toledo, Seiji Iguchi, Saburo Aimoto, Luis J. González, Gabriel Padrón, Toshifumi Takao, Vladimir Besada

Charge state-selective separation of peptides by reversible modification of amino groups and strong cation-exchange chromatography: Evaluation in proteomic studies using peptide-centric database searches

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Yasset Perez-Riverol

, Aniel Sánchez, Yassel Ramos

, Alex Schmidt, Markus Müller

, Lázaro Betancourt, Luis J. González, Roberto Vera, Gabriel Padron, Vladimir Besada

In silico analysis of accurate proteomics, complemented by selective isolation of peptides

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Yassel Ramos

, Yairet Garcia, Yasset Pérez-Riverol

, Alejandro Leyva, Gabriel Padrón, Aniel Sánchez, Lila Castellanos-Serra, Luis J. González, Vladimir Besada

Peptide fractionation by acid pH SDS-free electrophoresis

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2010 Aniel Sanchez, Yasset Perez-Riverol

, Luis Javier González, Jesus Noda, Lazaro Betancourt, Yassel Ramos

, Jeovanis Gil

, Roberto Vera, Gabriel Padrón, Gabriel Padro\ ́and Vladimir Besada

Evaluation of Phenylthiocarbamoyl-Derivatized Peptides by Electrospray Ionization Mass Spectrometry: Selective Isolation and Analysis of Modified Multiply Charged Peptides for Liquid Chromatography-Tandem Mass Spectrometry Experiments

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2008 Yassel Ramos

, Jorge Fernández de-Cossio, Laźa ́Betancourt, Elain Gutierrez, Yoan Machado, Aniel Sánchez, Lila Castellanos-Serra, Luis J. González, Luis J. Gonza\éz, Jorge Fernández-De-Cossio, Yasset Pérez-Riverol

, Lázaro Betancourt, Jeovanis Gil

, Gabriel Padrón, Vladimir Besada and 1 other authors

Proteomics based on peptide fractionation by SDS-free PAGE

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Papers authored by Yasset Perez-Riverol