Markus Muller - Dissemin

All papers authored by Markus Muller

This paper is made freely available by the publisher.

2020 Chloe Chong, Markus Müller

, HuiSong Pak, Dermot Harnett, Florian Huber, Delphine Grun, Marion Leleu, Aymeric Auger, Marion Arnaud

, Brian J. Stevenson, Justine Michaux, Ilija Bilic

, Antje Hirsekorn, Lorenzo Calviello, Laia Simó-Riudalbas and 11 other authors

Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes

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2015 Ying Zhang, Markus Muller

, Bo Xu, Yutaka Yoshida, Oliver Horlacher, Frederic Nikitin, Samuel Garessus, Sameh Magdeldin, Naohiko Kinoshita, Hidehiko Fujinaka, Eishin Yaoita, Miki Hasegawa, Frederique Lisacek, Tadashi Yamamoto

Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin-embedding

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This paper was not found in any repository, but could be made available legally by the author.

Aivett Bilbao, Emmanuel Varesio, Jeremy Luban, Caterina Strambio De-Castillia, Caterina Strambio-De-Castillia, Gérard Hopfgartner, Markus Müller

, Frédérique Lisacek

Processing Strategies and Software Solutions for Data-Independent Acquisition in Mass Spectrometry.

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2014 Yasset Perez-Riverol

, Rui Wang, Henning Hermjakob, Markus Müller

, Vladimir Vesada, Juan Antonio Vizcaíno

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective☆

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2013 Huisong Pak, Frederic Nikitin, Florent Gluck, Frederique Lisacek, Alexander Scherl, Markus Muller

Clustering and Filtering Tandem Mass Spectra Acquired in Data-Independent Mode

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2012 Florent Glück, Christine Hoogland, Paola Antinori, Xavier Robin, Frederic Nikitin, Anne Zufferey, Carla Pasquarello, Vanessa Fétaud, Loïc Dayon

, Markus Müller

, Frederique Lisacek, Laurent Geiser, Denis Hochstrasser, Jean-Charles Sanchez, Alexander Scherl

EasyProt — An easy-to-use graphical platform for proteomics data analysis

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Yasset Perez-Riverol

, Enrique Audain, Aleli Millan, Yassel Ramos

, Aniel Sanchez, Juan Antonio Vizcaíno

, Rui Wang, Markus Müller

, Yoan J. Machado, Lazaro H. Betancourt, Luis J. González, Gabriel Padrón, Vladimir Besada

Isoelectric point optimization using peptide descriptors and support vector machines

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2011 Erik Ahrné, Yuki Ohta, Frederic Nikitin, Alexander Scherl, Frederique Lisacek, Markus Müller

An improved method for the construction of decoy peptide MS/MS spectra suitable for the accurate estimation of false discovery rates

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Erik Ahrné, Frederic Nikitin, Frederique Lisacek, Markus Müller

QuickMod: A Tool for Open Modification Spectrum Library Searches

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Yasset Perez-Riverol

, Aniel Sánchez, Yassel Ramos

, Alex Schmidt, Markus Müller

, Lázaro Betancourt, Luis J. González, Roberto Vera, Gabriel Padron, Vladimir Besada

In silico analysis of accurate proteomics, complemented by selective isolation of peptides

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Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller

pROC: an open-source package for R and S+ to analyze and compare ROC curves

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2010 Patricia M. Palagi, Markus Müller

, Daniel Walther, Frédérique Lisacek

LC/MS Data Processing for Label-Free Quantitative Analysis

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Erik Ahrné, Markus Müller

, Frederique Lisacek

Unrestricted identification of modified proteins using MS/MS

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2009 Xavier Robin, Natacha Turck, Alexandre Hainard, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller

Bioinformatics for protein biomarker panel classification: what is needed to bring biomarker panels intoin vitrodiagnostics?

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Alexandre Hainard, Natalia Tiberti, Xavier Robin, Veerle Lejon, Dieudonné Mumba Ngoyi, Enock Matovu

, John Charles Enyaru, Catherine Fouda, Joseph Mathu Ndung'u, Frédérique Lisacek, Markus Müller

, Natacha Turck, Jean-Charles Sanchez

A Combined CXCL10, CXCL8 and H-FABP Panel for the Staging of Human African Trypanosomiasis Patients

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Erik Ahrné, Alexandre Masselot, Pierre-Alain Binz

, Markus Müller

, Frederique Lisacek

A simple workflow to increase MS2 identification rate by subsequent spectral library search

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2007 Lukas N. Mueller, Oliver Rinner, Alexander Schmidt, Simon Letarte, Bernd Bodenmiller, Mi-Youn Brusniak, Olga Vitek, Ruedi Aebersold, Markus Müller

SuperHirn – a novel tool for high resolution LC-MS-based peptide/protein profiling

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Oliver Rinner, Lukas N. Mueller, Martin Hubálek, Markus Müller

, Matthias Gstaiger, Ruedi Aebersold

An integrated mass spectrometric and computational framework for the analysis of protein interaction networks

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Catherine Déon, Willy Bienvenut, Jean-Charles Sanchez, Denis F. Hochstrasser, Markus Müller

, Robin Gras, Ron D. Appel

Analysis of proteomes using the molecular scanner.

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2006 Melanie Hilario, Alexandros Kalousis, Christian Pellegrini, Markus Müller

Processing and classification of protein mass spectra

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All papers authored by Markus Muller