All papers authored by Kristoffer Forslund
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Kanta Chechi,
Judith Aron-Wisnewsky,
Rima Chakaroun,
Trine Nielsen ,
Valentina Tremaroli,
Boyang Ji ,
Edi Prifti ,
Antonis Myridakis ,
Julien Chilloux ,
Petros Andrikopoulos,
Yong Fan ,
Michael T. Olanipekun,
Renato Alves
and 49 other authors
Microbiome and metabolome features of the cardiometabolic disease spectrum
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Katharina Nimptsch,
Sofia K. Forslund ,
Kristina Schlicht,
Miguel Gueimonde ,
Patrizia Brigidi,
Silvia Turroni ,
Wolfgang Ahrens ,
Antje Hebestreit ,
Maike Wolters ,
Andreas Dötsch ,
Ute Nöthlings,
Kolade Oluwagbemigun ,
Rafael R. C. Cuadrat,
Matthias B. Schulze
and 21 other authors
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Kristoffer Forslund ,
Luis Pedro Coelho ,
Damian Szklarczyk,
Lars Juhl Jensen,
Christian von Mering,
Peer Bork
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
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Cécile Pereira,
Todd DeLuca,
Maria J. Martin,
Fabian Schreiber,
Kimmen Sjölander,
Damian Szklarczyk,
Toni Gabaldón,
Ioannis Xenarios
and 13 other authors
Standardized benchmarking in the quest for orthologs
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Peer Bork,
Willem M. de Vos
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
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Trine Nielsen,
F. Hildebrandt,
T. Nielsen,
Falk Hildebrand ,
Helle Krogh Pedersen ,
Emmanuelle Le Chatelier,
Jens Roat Kultima,
Gwen Falony,
Karsten Kristiansen,
Shinichi Sunagawa ,
Jens Roat Kultima
and 24 other authors
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
Download from www.ncbi.nlm.nih.gov
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Helen Cook,
Davide Heller,
Mathias C. Walter,
Thomas Rattei,
Daniel R. Mende,
Shinichi Sunagawa ,
Michael Kuhn,
Lars Juhl Jensen,
Christian von Mering,
Peer Bork
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Tomas Larsson,
Sean Powell,
Tobias Doerks,
Christian von Mering ,
Peer Bork
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Jaime Huerta-Cepas,
Alexander Roth,
Milan Simonovic,
Kalliopi P. Tsafou,
Alberto Santos,
Michael Kuhn,
Peer Bork,
Lars J. Jensen,
Christian von Mering
STRING v10: protein–protein interaction networks, integrated over the tree of life
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Faculty of Health Sciences University of Copenhagen Novo Nordisk Foundation Center for Protein Research,
University of Zurich and Swiss Institute of Bioinformatics Institute of Molecular Life Sciences,
Damian Szklarczyk,
Kalliopi Trachana,
Alexander Roth,
Jaime Huerta-Cepas,
Seattle Institute for Systems Biology,
Toni Gabaldón,
Thomas Rattei,
Centre for Genomic Regulation (CRG) Bioinformatics and Genomics Programme,
Chris Creevey,
Michael Kuhn
and 6 other authors
eggNOG v4.0: nested orthology inference across 3686 organisms
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Shinichi Sunagawa ,
Jens Roat Kultima,
Daniel R. Mende,
Manimozhiyan Arumugam,
Athanasios Typas,
Peer Bork
Country-specific antibiotic use practices impact the human gut resistome
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Alexandros Stamatakis,
Joseph Barry,
Aidan Budd,
Theodoros G. Soldatos,
Katja Linssen,
Abdul Mateen Rajput
Biggest challenges in bioinformatics
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Erik L. L. Sonnhammer
Evolution of Protein Domain Architectures
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F. Schreiber,
N. Thanintorn,
E. L. L. Sonnhammer
OrthoDisease: tracking disease gene orthologs across 100 species
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Isabella Pekkari,
Erik Ll L. Sonnhammer
Domain architecture conservation in orthologs
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Erik Ll L. Sonnhammer
Orthology confers intron position conservation
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Tina Köstler,
David N. Messina ,
Sanjit Roopra,
Oliver Frings,
Erik L. L. Sonnhammer
InParanoid 7: New algorithms and tools for eukaryotic orthology analysis
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Erik Ll L. Sonnhammer
Benchmarking homology detection procedures with low complexity filters
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Erik L. L. Sonnhammer
Predicting protein function from domain content
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Anna Henricson,
Volker Hollich,
Erik L. L. Sonnhammer
Domain Tree Based Analysis of Protein Architecture Evolution
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