Researcher
Angie S. Hinrichs
University of California Santa Cruz
Statistics
62 papers found
All papers authored by Angie S. Hinrichs
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2024
Stephanie Goya,
Christopher Ruis,
Richard A. Neher,
Adam Meijer,
Ammar Aziz,
Angie S. Hinrichs 
,
Anne von Gottberg ,
Cornelius Roemer,
Daniel G. Amoako,
Dolores Acuña,
Jakob McBroome,
James R. Otieno,
Jinal N. Bhiman,
Josie Everatt,
Juan C. Muñoz Escalante
and 11 other authors
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,
Anne von Gottberg ,
Cornelius Roemer,
Daniel G. Amoako,
Dolores Acuña,
Jakob McBroome,
James R. Otieno,
Jinal N. Bhiman,
Josie Everatt,
Juan C. Muñoz Escalante
and 11 other authors
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Jakob McBroome ,
Adriano de Bernardi Schneider,
Cornelius Roemer,
Michael T. Wolfinger ,
Angie S. Hinrichs ,
Aine Niamh O’Toole ,
Christopher Ruis ,
Yatish Turakhia,
Andrew Rambaut ,
Russell Corbett-Detig
,
Adriano de Bernardi Schneider,
Cornelius Roemer,
Michael T. Wolfinger ,
Angie S. Hinrichs ,
Aine Niamh O’Toole ,
Christopher Ruis ,
Yatish Turakhia,
Andrew Rambaut ,
Russell Corbett-Detig
A framework for automated scalable designation of viral pathogen lineages from genomic data
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Adriano de Bernardi Schneider ,
Michelle Su,
Angie S. Hinrichs ,
Jade Wang,
Helly Amin,
John Bell,
Debra A. Wadford,
Áine O’Toole ,
Emily Scher,
Marc D. Perry,
Yatish Turakhia ,
Nicola De Maio ,
Scott Hughes,
Russ Corbett-Detig
Download from doi.org
,
Michelle Su,
Angie S. Hinrichs ,
Jade Wang,
Helly Amin,
John Bell,
Debra A. Wadford,
Áine O’Toole ,
Emily Scher,
Marc D. Perry,
Yatish Turakhia ,
Nicola De Maio ,
Scott Hughes,
Russ Corbett-Detig
Download from doi.org
2023
Angie Hinrichs ,
Cheng Ye ,
Yatish Turakhia ,
Russell Corbett-Detig
,
Cheng Ye ,
Yatish Turakhia ,
Russell Corbett-Detig
The ongoing evolution of UShER during the SARS-CoV-2 pandemic
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Brian J. Raney ,
Galt P. Barber,
Anna Benet-Pagès,
Jonathan Casper,
Hiram Clawson ,
Melissa S Cline,
Mark Diekhans ,
Clayton Fischer,
Jairo Navarro Gonzalez ,
Glenn Hickey,
Angie S Hinrichs ,
Robert M Kuhn,
Brian T Lee ,
Christopher M Lee ,
Phillipe Le Mercier
and 12 other authors
,
Galt P. Barber,
Anna Benet-Pagès,
Jonathan Casper,
Hiram Clawson ,
Melissa S Cline,
Mark Diekhans ,
Clayton Fischer,
Jairo Navarro Gonzalez ,
Glenn Hickey,
Angie S Hinrichs ,
Robert M Kuhn,
Brian T Lee ,
Christopher M Lee ,
Phillipe Le Mercier
and 12 other authors
The UCSC Genome Browser database: 2024 update
Download from doi.org
Alexander M. Kramer ,
Bryan Thornlow ,
Cheng Ye,
Nicola De Maio ,
Jakob McBroome ,
Angie S. Hinrichs ,
Robert Lanfear,
Yatish Turakhia ,
Russell Corbett-Detig
Upload
,
Bryan Thornlow ,
Cheng Ye,
Nicola De Maio ,
Jakob McBroome ,
Angie S. Hinrichs ,
Robert Lanfear,
Yatish Turakhia ,
Russell Corbett-Detig
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2022
Luis R. Nassar ,
Galt P. Barber,
Anna Benet-Pagès,
Jonathan Casper,
Hiram Clawson,
Mark Diekhans ,
Clay Fischer,
Jairo Navarro Gonzalez ,
Angie S. Hinrichs ,
Brian T. Lee ,
Christopher M. Lee ,
Pranav Muthuraman,
Beagan Nguy,
Tiana Pereira,
Parisa Nejad
and 10 other authors
,
Galt P. Barber,
Anna Benet-Pagès,
Jonathan Casper,
Hiram Clawson,
Mark Diekhans ,
Clay Fischer,
Jairo Navarro Gonzalez ,
Angie S. Hinrichs ,
Brian T. Lee ,
Christopher M. Lee ,
Pranav Muthuraman,
Beagan Nguy,
Tiana Pereira,
Parisa Nejad
and 10 other authors
The UCSC Genome Browser database: 2023 update
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Yatish Turakhia,
Bryan Thornlow,
Angie Hinrichs ,
Jakob McBroome,
Nicolas Ayala,
Cheng Ye,
Kyle Smith ,
Nicola De Maio,
David Haussler ,
Robert Lanfear,
Russell Corbett-Detig
,
Jakob McBroome,
Nicolas Ayala,
Cheng Ye,
Kyle Smith ,
Nicola De Maio,
David Haussler ,
Robert Lanfear,
Russell Corbett-Detig
Pandemic-scale phylogenomics reveals the SARS-CoV-2 recombination landscape
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Cheng Ye,
Bryan Thornlow,
Angie Hinrichs ,
Alexander Kramer,
Cade Mirchandani,
Devika Torvi,
Robert Lanfear ,
Russell Corbett-Detig,
Yatish Turakhia
,
Alexander Kramer,
Cade Mirchandani,
Devika Torvi,
Robert Lanfear ,
Russell Corbett-Detig,
Yatish Turakhia
matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2
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2021
Cheng Ye,
Bryan Thornlow,
Alexander Kramer,
Jakob McBroome,
Angie Hinrichs ,
Russell Corbett-Detig,
Yatish Turakhia
Upload
,
Russell Corbett-Detig,
Yatish Turakhia
Upload
Brian T. Lee ,
Galt P. Barber,
Anna Benet-Pagès,
Jonathan Casper,
Hiram Clawson,
Mark Diekhans ,
Clay Fischer,
Jairo Navarro Gonzalez ,
Angie S. Hinrichs ,
Christopher M. Lee ,
Pranav Muthuraman,
Luis R. Nassar,
Beagan Nguy,
Tiana Pereira,
Gerardo Perez
and 10 other authors
,
Galt P. Barber,
Anna Benet-Pagès,
Jonathan Casper,
Hiram Clawson,
Mark Diekhans ,
Clay Fischer,
Jairo Navarro Gonzalez ,
Angie S. Hinrichs ,
Christopher M. Lee ,
Pranav Muthuraman,
Luis R. Nassar,
Beagan Nguy,
Tiana Pereira,
Gerardo Perez
and 10 other authors
The UCSC Genome Browser database: 2022 update
Download from academic.oup.com
David Haussler,
Max Haeussler,
Angie Hinrichs ,
Russell Corbett-Detig,
Isabel Bjork
,
Russell Corbett-Detig,
Isabel Bjork
Share pandemic sequences openly and fast
Download from www.nature.com
2020
Jairo Navarro Gonzalez ,
Ann S. Zweig,
Matthew L. Speir,
Daniel Schmelter,
Kate R. Rosenbloom,
Brian J. Raney,
Conner C. Powell,
Luis R. Nassar,
Nathan D. Maulding,
Christopher M. Lee ,
Brian T. Lee ,
Angie S. Hinrichs ,
Alastair C. Fyfe,
Jason D. Fernandes,
Mark Diekhans
and 8 other authors
,
Ann S. Zweig,
Matthew L. Speir,
Daniel Schmelter,
Kate R. Rosenbloom,
Brian J. Raney,
Conner C. Powell,
Luis R. Nassar,
Nathan D. Maulding,
Christopher M. Lee ,
Brian T. Lee ,
Angie S. Hinrichs ,
Alastair C. Fyfe,
Jason D. Fernandes,
Mark Diekhans
and 8 other authors
The UCSC Genome Browser database: 2021 update
Download from academic.oup.com
Yatish Turakhia ,
Nicola De Maio ,
Bryan Thornlow ,
Landen Gozashti,
Robert Lanfear,
Conor R. Walker ,
Angie S. Hinrichs ,
Jason D. Fernandes ,
Rui Borges ,
Greg Slodkowicz ,
Lukas Weilguny ,
David Haussler ,
Nick Goldman,
Russell Corbett-Detig
,
Nicola De Maio ,
Bryan Thornlow ,
Landen Gozashti,
Robert Lanfear,
Conor R. Walker ,
Angie S. Hinrichs ,
Jason D. Fernandes ,
Rui Borges ,
Greg Slodkowicz ,
Lukas Weilguny ,
David Haussler ,
Nick Goldman,
Russell Corbett-Detig
Stability of SARS-CoV-2 phylogenies
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Jason D. Fernandes,
Angie S. Hinrichs ,
Hiram Clawson,
Jairo Navarro Gonzalez,
Brian T. Lee,
Luis R. Nassar,
Brian J. Raney,
Kate R. Rosenbloom ,
Santrupti Nerli,
Arjun A. Rao ,
Daniel Schmelter,
Alastair Fyfe,
Nathan Maulding,
Ann S. Zweig,
Todd M. Lowe
and 5 other authors
,
Hiram Clawson,
Jairo Navarro Gonzalez,
Brian T. Lee,
Luis R. Nassar,
Brian J. Raney,
Kate R. Rosenbloom ,
Santrupti Nerli,
Arjun A. Rao ,
Daniel Schmelter,
Alastair Fyfe,
Nathan Maulding,
Ann S. Zweig,
Todd M. Lowe
and 5 other authors
The UCSC SARS-CoV-2 Genome Browser
Download from www.nature.com
2019
Christopher M. Lee ,
Galt P. Barber,
Jonathan Casper,
Hiram Clawson,
Mark Diekhans,
Jairo Navarro Gonzalez,
Angie S. Hinrichs ,
Brian T. Lee ,
Luis R. Nassar,
Conner C. Powell,
Brian J. Raney,
Kate R. Rosenbloom,
Daniel Schmelter,
Matthew L. Speir,
Ann S. Zweig
and 4 other authors
,
Galt P. Barber,
Jonathan Casper,
Hiram Clawson,
Mark Diekhans,
Jairo Navarro Gonzalez,
Angie S. Hinrichs ,
Brian T. Lee ,
Luis R. Nassar,
Conner C. Powell,
Brian J. Raney,
Kate R. Rosenbloom,
Daniel Schmelter,
Matthew L. Speir,
Ann S. Zweig
and 4 other authors
UCSC Genome Browser enters 20th year
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2018
Maximilian Haeussler,
Ann S. Zweig,
Cath Tyner,
Matthew L. Speir,
Kate R. Rosenbloom,
Brian J. Raney,
Christopher M. Lee,
Brian T. Lee ,
Angie S. Hinrichs ,
Jairo Navarro Gonzalez,
David Gibson,
Mark Diekhans,
Hiram Clawson,
Jonathan Casper,
Galt P. Barber
and 3 other authors
,
Angie S. Hinrichs ,
Jairo Navarro Gonzalez,
David Gibson,
Mark Diekhans,
Hiram Clawson,
Jonathan Casper,
Galt P. Barber
and 3 other authors
The UCSC Genome Browser database: 2019 update
Download from doi.org
2017
Jonathan Casper,
Ann S. Zweig,
Chris Villarreal,
Cath Tyner,
Matthew L. Speir,
Kate R. Rosenbloom,
Brian J. Raney,
Christopher M. Lee,
Brian T. Lee ,
Donna Karolchik,
Angie S. Hinrichs ,
Maximilian Haeussler,
Luvina Guruvadoo,
Jairo Navarro Gonzalez,
David Gibson
and 9 other authors
,
Donna Karolchik,
Angie S. Hinrichs ,
Maximilian Haeussler,
Luvina Guruvadoo,
Jairo Navarro Gonzalez,
David Gibson
and 9 other authors
The UCSC Genome Browser database: 2018 update
Download from doi.orgMissing publications? Search for publications with a matching author name.