All papers authored by Justin Zook
Refreshing results…
2023
Arang Rhie 
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
,
Sergey Nurk,
Monika Cechova,
Savannah J. Hoyt ,
Dylan J. Taylor ,
Nicolas Altemose ,
Paul W. Hook ,
Sergey Koren ,
Mikko Rautiainen,
Ivan A. Alexandrov,
Jamie Allen ,
Mobin Asri,
Andrey V. Bzikadze ,
Nae-Chyun Chen,
Chen-Shan Chin
and 72 other authors
The complete sequence of a human Y chromosome
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Wen-Wei Liao ,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng ,
Justin Chu,
Vincenza Colonna
and 104 other authors
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng ,
Justin Chu,
Vincenza Colonna
and 104 other authors
A draft human pangenome reference
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2022
Nathan D. Olson ,
Justin Wagner,
Jennifer McDaniel,
Sarah H. Stephens,
Samuel T. Westreich,
Anish G. Prasanna,
Elaine Johanson,
Emily Boja ,
Ezekiel J. Maier,
Omar Serang,
David Jáspez ,
José M. Lorenzo-Salazar,
Adrián Muñoz-Barrera,
Luis A. Rubio-Rodríguez,
Carlos Flores
and 65 other authors
Download from doi.org
,
Justin Wagner,
Jennifer McDaniel,
Sarah H. Stephens,
Samuel T. Westreich,
Anish G. Prasanna,
Elaine Johanson,
Emily Boja ,
Ezekiel J. Maier,
Omar Serang,
David Jáspez ,
José M. Lorenzo-Salazar,
Adrián Muñoz-Barrera,
Luis A. Rubio-Rodríguez,
Carlos Flores
and 65 other authors
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Nicolas Altemose ,
Pragya Sidhwani ,
Lev Uralsky ,
Fedor D. Ryabov ,
Colin J. Shew,
Michael E. G. Sauria ,
Valery A. Shepelev,
Mitchell R. Vollger ,
Arang Rhie ,
Glennis A. Logsdon ,
Kishwar Shafin ,
Andrey V. Bzikadze ,
Daniel Olson ,
Sasha A. Langley,
Leonardo Gomes de Lima
and 46 other authors
,
Pragya Sidhwani ,
Lev Uralsky ,
Fedor D. Ryabov ,
Colin J. Shew,
Michael E. G. Sauria ,
Valery A. Shepelev,
Mitchell R. Vollger ,
Arang Rhie ,
Glennis A. Logsdon ,
Kishwar Shafin ,
Andrey V. Bzikadze ,
Daniel Olson ,
Sasha A. Langley,
Leonardo Gomes de Lima
and 46 other authors
Complete genomic and epigenetic maps of human centromeres
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Sergey Aganezov ,
Stephanie M. Yan ,
Daniela C. Soto ,
Melanie Kirsche ,
Samantha Zarate ,
Pavel Avdeyev ,
Dylan J. Taylor ,
Kishwar Shafin ,
Alaina Shumate ,
Chunlin Xiao ,
Justin Wagner,
Jennifer McDaniel ,
Nathan D. Olson ,
Michael E. G. Sauria ,
Mitchell R. Vollger
and 18 other authors
,
Stephanie M. Yan ,
Daniela C. Soto ,
Melanie Kirsche ,
Samantha Zarate ,
Pavel Avdeyev ,
Dylan J. Taylor ,
Kishwar Shafin ,
Alaina Shumate ,
Chunlin Xiao ,
Justin Wagner,
Jennifer McDaniel ,
Nathan D. Olson ,
Michael E. G. Sauria ,
Mitchell R. Vollger
and 18 other authors
A complete reference genome improves analysis of human genetic variation
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Sergey Nurk ,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
,
Sergey Koren ,
Arang Rhie ,
Mikko Rautiainen ,
Andrey V. Bzikadze ,
Alla Mikheenko,
Mitchell R. Vollger ,
Nicolas Altemose ,
Lev Uralsky ,
Ariel Gershman ,
Sergey Aganezov ,
Savannah J. Hoyt ,
Mark Diekhans ,
Glennis A. Logsdon ,
Michael Alonge
and 85 other authors
The complete sequence of a human genome
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Ann M. Mc Cartney ,
Kishwar Shafin ,
Michael Alonge,
Andrey V. Bzikadze,
Alaina Shumate,
Giulio Formenti ,
Chirag Jain,
Daniela C. Soto ,
Arkarachai Fungtammasan ,
Ivan Sović,
Sergey Koren ,
Jonathan Md D. Wood ,
Glennis A. Logsdon ,
Kerstin Howe ,
Justin M. Zook
and 6 other authors
,
Kishwar Shafin ,
Michael Alonge,
Andrey V. Bzikadze,
Alaina Shumate,
Giulio Formenti ,
Chirag Jain,
Daniela C. Soto ,
Arkarachai Fungtammasan ,
Ivan Sović,
Sergey Koren ,
Jonathan Md D. Wood ,
Glennis A. Logsdon ,
Kerstin Howe ,
Justin M. Zook
and 6 other authors
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
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Justin Wagner,
Nathan D. Olson ,
Lindsay Harris,
Jennifer McDaniel,
Haoyu Cheng ,
Arkarachai Fungtammasan,
Yih-Chii Hwang,
Richa Gupta ,
Aaron M. Wenger,
William J. Rowell ,
Ziad M. Khan ,
Jesse Farek,
Yiming Zhu,
Aishwarya Pisupati ,
Medhat Mahmoud
and 22 other authors
,
Lindsay Harris,
Jennifer McDaniel,
Haoyu Cheng ,
Arkarachai Fungtammasan,
Yih-Chii Hwang,
Richa Gupta ,
Aaron M. Wenger,
William J. Rowell ,
Ziad M. Khan ,
Jesse Farek,
Yiming Zhu,
Aishwarya Pisupati ,
Medhat Mahmoud
and 22 other authors
Curated variation benchmarks for challenging medically relevant autosomal genes
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2021
Jonathan Foox,
Scott W. Tighe ,
Charles M. Nicolet,
Justin M. Zook ,
Marta Byrska-Bishop ,
Wayne E. Clarke,
Michael M. Khayat ,
Medhat Mahmoud ,
Phoebe K. Laaguiby,
Zachary T. Herbert ,
Derek Warner,
George S. Grills,
Jin Jen,
Shawn Levy ,
Jenny Xiang
and 12 other authors
Download from www.nature.com
,
Charles M. Nicolet,
Justin M. Zook ,
Marta Byrska-Bishop ,
Wayne E. Clarke,
Michael M. Khayat ,
Medhat Mahmoud ,
Phoebe K. Laaguiby,
Zachary T. Herbert ,
Derek Warner,
George S. Grills,
Jin Jen,
Shawn Levy ,
Jenny Xiang
and 12 other authors
Download from www.nature.com
Jonathan Foox,
Scott W. Tighe ,
Charles M. Nicolet,
Justin M. Zook ,
Marta Byrska-Bishop ,
Wayne E. Clarke,
Michael M. Khayat ,
Medhat Mahmoud ,
Phoebe K. Laaguiby,
Zachary T. Herbert ,
Derek Warner,
George S. Grills,
Jin Jen,
Shawn Levy ,
Jenny Xiang
and 12 other authors
,
Charles M. Nicolet,
Justin M. Zook ,
Marta Byrska-Bishop ,
Wayne E. Clarke,
Michael M. Khayat ,
Medhat Mahmoud ,
Phoebe K. Laaguiby,
Zachary T. Herbert ,
Derek Warner,
George S. Grills,
Jin Jen,
Shawn Levy ,
Jenny Xiang
and 12 other authors
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study
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2020
Shilpa Garg ,
Arkarachai Fungtammasan ,
Andrew Carroll,
Mike Chou,
Anthony Schmitt,
Xiang Zhou,
Stephen Mac,
Paul Peluso,
Emily Hatas,
Jay Ghurye,
Jared Maguire,
Medhat Mahmoud ,
Haoyu Cheng ,
David Heller ,
Justin M. Zook
and 7 other authors
,
Arkarachai Fungtammasan ,
Andrew Carroll,
Mike Chou,
Anthony Schmitt,
Xiang Zhou,
Stephen Mac,
Paul Peluso,
Emily Hatas,
Jay Ghurye,
Jared Maguire,
Medhat Mahmoud ,
Haoyu Cheng ,
David Heller ,
Justin M. Zook
and 7 other authors
Chromosome-scale, haplotype-resolved assembly of human genomes
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Chen-Shan Chin,
Justin Wagner,
Qiandong Zeng,
Erik Garrison,
Shilpa Garg,
Arkarachai Fungtammasan ,
Mikko Rautiainen ,
Sergey Aganezov ,
Melanie Kirsche ,
Samantha Zarate,
Michael C. Schatz,
Chunlin Xiao ,
William J. Rowell ,
Charles Markello ,
Jesse Farek
and 11 other authors
,
Mikko Rautiainen ,
Sergey Aganezov ,
Melanie Kirsche ,
Samantha Zarate,
Michael C. Schatz,
Chunlin Xiao ,
William J. Rowell ,
Charles Markello ,
Jesse Farek
and 11 other authors
A diploid assembly-based benchmark for variants in the major histocompatibility complex
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Justin Wagner,
Nathan D. Olson,
Lindsay Harris,
Jennifer McDaniel,
Ziad Khan,
Jesse Farek,
Medhat Mahmoud ,
Ana Stankovic,
Vladimir Kovacevic,
Byunggil Yoo,
Neil Miller,
Jeffrey A. Rosenfeld ,
Bohan Ni,
Samantha Zarate,
Melanie Kirsche
and 27 other authors
,
Ana Stankovic,
Vladimir Kovacevic,
Byunggil Yoo,
Neil Miller,
Jeffrey A. Rosenfeld ,
Bohan Ni,
Samantha Zarate,
Melanie Kirsche
and 27 other authors
Benchmarking challenging small variants with linked and long reads
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Justin M. Zook ,
Nancy F. Hansen ,
Nathan D. Olson ,
Lesley Chapman,
James C. Mullikin ,
Chunlin Xiao,
Stephen Sherry,
Sergey Koren ,
Adam M. Phillippy ,
Paul C. Boutros ,
Sayed Mohammad E. Sahraeian,
Vincent Huang ,
Alexandre Rouette,
Noah Alexander,
Christopher E. Mason
and 35 other authors
,
Nancy F. Hansen ,
Nathan D. Olson ,
Lesley Chapman,
James C. Mullikin ,
Chunlin Xiao,
Stephen Sherry,
Sergey Koren ,
Adam M. Phillippy ,
Paul C. Boutros ,
Sayed Mohammad E. Sahraeian,
Vincent Huang ,
Alexandre Rouette,
Noah Alexander,
Christopher E. Mason
and 35 other authors
Author Correction: A robust benchmark for detection of germline large deletions and insertions
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Justin M. Zook ,
Nancy F. Hansen ,
Nathan D. Olson ,
Lesley Chapman,
James C. Mullikin ,
Chunlin Xiao,
Stephen Sherry,
Sergey Koren ,
Adam M. Phillippy ,
Paul C. Boutros ,
Sayed Mohammad E. Sahraeian,
Vincent Huang ,
Alexandre Rouette,
Noah Alexander,
Christopher E. Mason
and 35 other authors
,
Nancy F. Hansen ,
Nathan D. Olson ,
Lesley Chapman,
James C. Mullikin ,
Chunlin Xiao,
Stephen Sherry,
Sergey Koren ,
Adam M. Phillippy ,
Paul C. Boutros ,
Sayed Mohammad E. Sahraeian,
Vincent Huang ,
Alexandre Rouette,
Noah Alexander,
Christopher E. Mason
and 35 other authors
A robust benchmark for detection of germline large deletions and insertions
Download from www.nature.com
2019
Aaron M. Wenger ,
Paul Peluso,
William J. Rowell ,
Pi-Chuan Chang ,
Richard J. Hall,
Gregory T. Concepcion ,
Jana Ebler,
Arkarachai Fungtammasan ,
Alexey Kolesnikov,
Nathan D. Olson ,
Armin Töpfer,
Michael Alonge,
Medhat Mahmoud ,
Yufeng Qian,
Chen-Shan Chin
and 13 other authors
Download from www.nature.com
,
Paul Peluso,
William J. Rowell ,
Pi-Chuan Chang ,
Richard J. Hall,
Gregory T. Concepcion ,
Jana Ebler,
Arkarachai Fungtammasan ,
Alexey Kolesnikov,
Nathan D. Olson ,
Armin Töpfer,
Michael Alonge,
Medhat Mahmoud ,
Yufeng Qian,
Chen-Shan Chin
and 13 other authors
Download from www.nature.com
2012
Amy S. Gargis,
Kalman Lisa,
Meredith W. Berry,
David P. Bick,
David P. Dimmock,
Hambuch Tina,
Lu Fei,
Lyon Elaine,
Karl V. Voelkerding,
Barbara A. Zehnbauer,
Agarwala Richa,
Sarah F. Bennett,
Chen Bin,
Ephrem L. H. Chin,
John G. Compton
and 27 other authors
Assuring the quality of next-generation sequencing in clinical laboratory practice
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