Researcher
Emma Hodcroft
Swiss Tropical and Public Health Institute
Statistics
30 papers found
All papers authored by Emma Hodcroft
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2024
Margarida Pires Simoes 
,
Emma B. Hodcroft ,
Peter Simmonds ,
Jan Albert ,
Enagon K. Alidjinou,
Katia Ambert-Balay ,
Cristina Andrés ,
Andrés Antón ,
Christelle Auvray ,
Jean-Luc Bailly ,
Fausto Baldanti ,
Capser Bastings,
Stuart Beard,
Carla Berengua Pereira,
Natasa Berginc
and 128 other authors
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,
Emma B. Hodcroft ,
Peter Simmonds ,
Jan Albert ,
Enagon K. Alidjinou,
Katia Ambert-Balay ,
Cristina Andrés ,
Andrés Antón ,
Christelle Auvray ,
Jean-Luc Bailly ,
Fausto Baldanti ,
Capser Bastings,
Stuart Beard,
Carla Berengua Pereira,
Natasa Berginc
and 128 other authors
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Sarah A. Nadeau ,
Timothy G. Vaughan,
Christiane Beckmann ,
Ivan Topolsky ,
Chaoran Chen ,
Emma Hodcroft ,
Tobias Schär,
Ina Nissen,
Natascha Santacroce,
Elodie Burcklen,
Pedro Ferreira ,
Kim Philipp Jablonski ,
Susana Posada-Céspedes ,
Vincenzo Capece,
Sophie Seidel
and 34 other authors
,
Timothy G. Vaughan,
Christiane Beckmann ,
Ivan Topolsky ,
Chaoran Chen ,
Emma Hodcroft ,
Tobias Schär,
Ina Nissen,
Natascha Santacroce,
Elodie Burcklen,
Pedro Ferreira ,
Kim Philipp Jablonski ,
Susana Posada-Céspedes ,
Vincenzo Capece,
Sophie Seidel
and 34 other authors
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
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2022
Diego García Martínez de Artola,
Josiane Reist,
Robert Dyrdak ,
Hubert G. M. Niesters ,
Cristina Andrés ,
Emma B. Hodcroft ,
Adrian Egli,
Randy Poelman,
Julia Alcoba Flórez,
Marijke Reynders ,
Elke Wollants ,
Richard A. Neher ,
Diego García Martínez de Artola ,
Julia Alcoba-Flórez ,
Andrés Antón
and 1 other authors
,
Hubert G. M. Niesters ,
Cristina Andrés ,
Emma B. Hodcroft ,
Adrian Egli,
Randy Poelman,
Julia Alcoba Flórez,
Marijke Reynders ,
Elke Wollants ,
Richard A. Neher ,
Diego García Martínez de Artola ,
Julia Alcoba-Flórez ,
Andrés Antón
and 1 other authors
Evolution, geographic spreading, and demographic distribution of Enterovirus D68
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Franziska Hufsky ,
Denis Beslic ,
Dimitri Boeckaerts ,
Sebastian Duchene ,
Enrique González-Tortuero ,
Andreas J. Gruber ,
Jiarong Guo ,
Daan Jansen ,
John Juma ,
Kunaphas Kongkitimanon ,
Antoni Luque ,
Muriel Ritsch,
Gabriel Lencioni Lovate ,
Luca Nishimura ,
Célia Pas
and 11 other authors
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Denis Beslic ,
Dimitri Boeckaerts ,
Sebastian Duchene ,
Enrique González-Tortuero ,
Andreas J. Gruber ,
Jiarong Guo ,
Daan Jansen ,
John Juma ,
Kunaphas Kongkitimanon ,
Antoni Luque ,
Muriel Ritsch,
Gabriel Lencioni Lovate ,
Luca Nishimura ,
Célia Pas
and 11 other authors
The International Virus Bioinformatics Meeting 2022
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Emma J. Griffiths ,
Ruth E. Timme ,
Catarina Inês Mendes ,
Andrew J. Page ,
Dan Fornika ,
Finlay Maguire ,
Josefina Campos ,
Daniel Park ,
Idowu B. Olawoye ,
Paul E. Oluniyi ,
Alan Christoffels ,
Anders Gonçalves da Silva ,
Rhiannon Cameron ,
Damion Dooley ,
Lee S. Katz
and 18 other authors
Download from doi.org
,
Ruth E. Timme ,
Catarina Inês Mendes ,
Andrew J. Page ,
Dan Fornika ,
Finlay Maguire ,
Josefina Campos ,
Daniel Park ,
Idowu B. Olawoye ,
Paul E. Oluniyi ,
Alan Christoffels ,
Anders Gonçalves da Silva ,
Rhiannon Cameron ,
Damion Dooley ,
Lee S. Katz
and 18 other authors
Download from doi.org
2021
Ivan Aksamentov ,
Cornelius Roemer ,
Emma Hodcroft ,
Richard Neher
,
Cornelius Roemer ,
Emma Hodcroft ,
Richard Neher
Nextclade: clade assignment, mutation calling and quality control for viral genomes
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Julia Niessl ,
Takuya Sekine ,
Joshua Lange ,
Viktoria Konya,
Marianne Forkel,
Jovana Maric,
Anna Rao,
Luca Mazzurana,
Efthymia Kokkinou,
Whitney Weigel,
Sian Llewellyn-Lacey ,
Emma B. Hodcroft ,
Annika C. Karlsson ,
Johan Fehrm ,
Joar Sundman
and 4 other authors
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,
Takuya Sekine ,
Joshua Lange ,
Viktoria Konya,
Marianne Forkel,
Jovana Maric,
Anna Rao,
Luca Mazzurana,
Efthymia Kokkinou,
Whitney Weigel,
Sian Llewellyn-Lacey ,
Emma B. Hodcroft ,
Annika C. Karlsson ,
Johan Fehrm ,
Joar Sundman
and 4 other authors
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Kimberley S. M. Benschop ,
Eeva K. Broberg,
Emma Hodcroft ,
Dennis Schmitz,
Jan Albert,
Anda Baicus,
Jean-Luc Bailly,
Gudrun Baldvinsdottir,
Natasa Berginc,
Soile Blomqvist,
Sindy Böttcher,
Mia Brytting,
Erika Bujaki,
Maria Cabrerizo,
Cristina Celma
and 54 other authors
,
Eeva K. Broberg,
Emma Hodcroft ,
Dennis Schmitz,
Jan Albert,
Anda Baicus,
Jean-Luc Bailly,
Gudrun Baldvinsdottir,
Natasa Berginc,
Soile Blomqvist,
Sindy Böttcher,
Mia Brytting,
Erika Bujaki,
Maria Cabrerizo,
Cristina Celma
and 54 other authors
Molecular Epidemiology and Evolutionary Trajectory of Emerging Echovirus 30, Europe
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Emma B. Hodcroft ,
Moira Zuber,
Hodcroft Eb,
Sarah Nadeau ,
Timothy G. Vaughan,
Katharine H. D. Crawford,
Christian L. Althaus,
Martina L. Reichmuth,
John E. Bowen,
Alexandra C. Walls,
Davide Corti,
Jesse D. Bloom,
David Veesler,
David Mateo,
Alberto Hernando
and 193 other authors
,
Moira Zuber,
Hodcroft Eb,
Sarah Nadeau ,
Timothy G. Vaughan,
Katharine H. D. Crawford,
Christian L. Althaus,
Martina L. Reichmuth,
John E. Bowen,
Alexandra C. Walls,
Davide Corti,
Jesse D. Bloom,
David Veesler,
David Mateo,
Alberto Hernando
and 193 other authors
Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.
Download from www.nature.com
Ana Rita Goncalves Cabecinhas,
Ana Rita Goncalves Cabecinhas,
Tim Roloff,
Madlen Stange ,
Claire Bertelli,
Michael Huber ,
Alban Ramette ,
Chaoran Chen ,
Sarah Nadeau ,
Yannick Gerth,
Sabine Yerly,
Onya Opota ,
Trestan Pillonel ,
Tobias Schuster,
Cesar M. J. A. Metzger
and 33 other authors
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,
Claire Bertelli,
Michael Huber ,
Alban Ramette ,
Chaoran Chen ,
Sarah Nadeau ,
Yannick Gerth,
Sabine Yerly,
Onya Opota ,
Trestan Pillonel ,
Tobias Schuster,
Cesar M. J. A. Metzger
and 33 other authors
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Katarina M. Braun ,
Gage K. Moreno ,
Peter J. Halfmann ,
Emma B. Hodcroft ,
David A. Baker ,
Emma C. Boehm ,
Andrea M. Weiler,
Amelia K. Haj ,
Masato Hatta ,
Shiho Chiba ,
Tadashi Maemura,
Yoshihiro Kawaoka ,
Katia Koelle ,
David H. O’Connor ,
Thomas C. Friedrich
,
Gage K. Moreno ,
Peter J. Halfmann ,
Emma B. Hodcroft ,
David A. Baker ,
Emma C. Boehm ,
Andrea M. Weiler,
Amelia K. Haj ,
Masato Hatta ,
Shiho Chiba ,
Tadashi Maemura,
Yoshihiro Kawaoka ,
Katia Koelle ,
David H. O’Connor ,
Thomas C. Friedrich
Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck
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Emma B. Hodcroft ,
Daryl B. Domman,
Daniel J. Snyder,
Kasopefoluwa Y. Oguntuyo,
Maarten Van Diest,
Kenneth H. Densmore,
Kurt C. Schwalm,
Jon Femling,
Jennifer L. Carroll,
Rona S. Scott,
Martha M. Whyte,
Michael W. Edwards,
Noah C. Hull,
Christopher G. Kevil,
John A. Vanchiere
and 4 other authors
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,
Daryl B. Domman,
Daniel J. Snyder,
Kasopefoluwa Y. Oguntuyo,
Maarten Van Diest,
Kenneth H. Densmore,
Kurt C. Schwalm,
Jon Femling,
Jennifer L. Carroll,
Rona S. Scott,
Martha M. Whyte,
Michael W. Edwards,
Noah C. Hull,
Christopher G. Kevil,
John A. Vanchiere
and 4 other authors
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John Huddleston ,
James Hadfield ,
Thomas Sibley ,
Jover Lee ,
Kairsten Fay ,
Misja Ilcisin,
Elias Harkins ,
Trevor Bedford ,
Richard Neher ,
Emma Hodcroft
,
James Hadfield ,
Thomas Sibley ,
Jover Lee ,
Kairsten Fay ,
Misja Ilcisin,
Elias Harkins ,
Trevor Bedford ,
Richard Neher ,
Emma Hodcroft
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
Download from doi.org
2020
Emma B. Hodcroft ,
Moira Zuber,
Sarah Nadeau ,
Timothy G. Vaughan,
Katharine H. D. Crawford,
Christian L. Althaus,
Martina L. Reichmuth,
John E. Bowen,
Alexandra C. Walls,
Davide Corti,
Jesse D. Bloom,
David Veesler,
David Mateo,
Alberto Hernando,
Iñaki Comas
and 3 other authors
,
Moira Zuber,
Sarah Nadeau ,
Timothy G. Vaughan,
Katharine H. D. Crawford,
Christian L. Althaus,
Martina L. Reichmuth,
John E. Bowen,
Alexandra C. Walls,
Davide Corti,
Jesse D. Bloom,
David Veesler,
David Mateo,
Alberto Hernando,
Iñaki Comas
and 3 other authors
Emergence and spread of a SARS-CoV-2 variant through Europe in the summer of 2020
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Á. O'Toole,
S. Zakotnik,
Tomaž Mark Zorec ,
G. de Marco,
S. Posada-Céspedes,
I. Topolsky,
M. Poljak,
K. Stene-Johansen,
C. Reusken,
H. Vennema,
L. Ruiz-Roldán,
M. Torres-Puente,
P. Ruíz-Hueso,
Paula Ruiz-Rodriguez ,
K. Polackova
and 584 other authors
Download from doi.org
,
G. de Marco,
S. Posada-Céspedes,
I. Topolsky,
M. Poljak,
K. Stene-Johansen,
C. Reusken,
H. Vennema,
L. Ruiz-Roldán,
M. Torres-Puente,
P. Ruíz-Hueso,
Paula Ruiz-Rodriguez ,
K. Polackova
and 584 other authors
Download from doi.org
Joseph R. Fauver,
Mary E. Petrone,
Alexander G. Watts,
Chantal B. F. Vogels,
Emma B. Hodcroft ,
Fauver Jr,
Hanna Y. Ehrlich,
Kayoko Shioda,
Anne L. Wyllie,
Petrone Me,
Anderson F. Brito,
Hodcroft Eb,
Ehrlich Hy,
Tara Alpert,
Nagarjuna R. Cheemarla
and 30 other authors
,
Fauver Jr,
Hanna Y. Ehrlich,
Kayoko Shioda,
Anne L. Wyllie,
Petrone Me,
Anderson F. Brito,
Hodcroft Eb,
Ehrlich Hy,
Tara Alpert,
Nagarjuna R. Cheemarla
and 30 other authors
Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States
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Richard A. Neher,
Robert Dyrdak,
Valentin Druelle,
Emma B. Hodcroft ,
Jan Albert
,
Jan Albert
Potential impact of seasonal forcing on a SARS-CoV-2 pandemic
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Sofie Elisabeth Midgley,
Kimberley Benschop ,
Robert Dyrdak,
Audrey Mirand,
Jean-Luc Bailly,
Sibylle Bierbaum,
Stefan Buderus,
Sindy Böttcher,
Anna-Maria Eis-Hübinger,
Mario Hönemann ,
Veronika Vorobieva Jensen,
Ulla Birgitte Hartling,
Cécile Henquell,
Marcus Panning,
Marianne Kragh Thomsen
and 2 other authors
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,
Robert Dyrdak,
Audrey Mirand,
Jean-Luc Bailly,
Sibylle Bierbaum,
Stefan Buderus,
Sindy Böttcher,
Anna-Maria Eis-Hübinger,
Mario Hönemann ,
Veronika Vorobieva Jensen,
Ulla Birgitte Hartling,
Cécile Henquell,
Marcus Panning,
Marianne Kragh Thomsen
and 2 other authors
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