All papers authored by Richard Neher
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2023
Sarah A. Nadeau 
,
Timothy G. Vaughan,
Christiane Beckmann ,
Ivan Topolsky ,
Chaoran Chen ,
Emma Hodcroft ,
Tobias Schär,
Ina Nissen,
Natascha Santacroce,
Elodie Burcklen,
Pedro Ferreira ,
Kim Philipp Jablonski ,
Susana Posada-Céspedes ,
Vincenzo Capece,
Sophie Seidel
and 34 other authors
,
Timothy G. Vaughan,
Christiane Beckmann ,
Ivan Topolsky ,
Chaoran Chen ,
Emma Hodcroft ,
Tobias Schär,
Ina Nissen,
Natascha Santacroce,
Elodie Burcklen,
Pedro Ferreira ,
Kim Philipp Jablonski ,
Susana Posada-Céspedes ,
Vincenzo Capece,
Sophie Seidel
and 34 other authors
Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data
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2022
Diego García Martínez de Artola,
Josiane Reist,
Robert Dyrdak ,
Hubert G. M. Niesters ,
Cristina Andrés ,
Emma B. Hodcroft ,
Adrian Egli,
Randy Poelman,
Julia Alcoba Flórez,
Marijke Reynders ,
Elke Wollants ,
Richard A. Neher ,
Diego García Martínez de Artola ,
Julia Alcoba-Flórez ,
Andrés Antón
and 1 other authors
,
Hubert G. M. Niesters ,
Cristina Andrés ,
Emma B. Hodcroft ,
Adrian Egli,
Randy Poelman,
Julia Alcoba Flórez,
Marijke Reynders ,
Elke Wollants ,
Richard A. Neher ,
Diego García Martínez de Artola ,
Julia Alcoba-Flórez ,
Andrés Antón
and 1 other authors
Evolution, geographic spreading, and demographic distribution of Enterovirus D68
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2021
Ivan Aksamentov ,
Cornelius Roemer ,
Emma Hodcroft ,
Richard Neher
,
Cornelius Roemer ,
Emma Hodcroft ,
Richard Neher
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Download from joss.theoj.org
Frank Konings ,
Mark D. Perkins,
Jens H. Kuhn,
Mark J. Pallen ,
Erik J. Alm,
Brett N. Archer,
Amal Barakat,
Trevor Bedford,
Jinal N. Bhiman,
Leon Caly ,
Lisa L. Carter,
Anne Cullinane,
Tulio de Oliveira ,
Julian Druce,
Ihab El Masry
and 32 other authors
,
Mark D. Perkins,
Jens H. Kuhn,
Mark J. Pallen ,
Erik J. Alm,
Brett N. Archer,
Amal Barakat,
Trevor Bedford,
Jinal N. Bhiman,
Leon Caly ,
Lisa L. Carter,
Anne Cullinane,
Tulio de Oliveira ,
Julian Druce,
Ihab El Masry
and 32 other authors
SARS-CoV-2 Variants of Interest and Concern naming scheme conducive for global discourse
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Ana Rita Goncalves Cabecinhas,
Ana Rita Goncalves Cabecinhas,
Tim Roloff,
Madlen Stange ,
Claire Bertelli,
Michael Huber ,
Alban Ramette ,
Chaoran Chen ,
Sarah Nadeau ,
Yannick Gerth,
Sabine Yerly,
Onya Opota ,
Trestan Pillonel ,
Tobias Schuster,
Cesar M. J. A. Metzger
and 33 other authors
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,
Claire Bertelli,
Michael Huber ,
Alban Ramette ,
Chaoran Chen ,
Sarah Nadeau ,
Yannick Gerth,
Sabine Yerly,
Onya Opota ,
Trestan Pillonel ,
Tobias Schuster,
Cesar M. J. A. Metzger
and 33 other authors
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John Huddleston ,
James Hadfield ,
Thomas Sibley ,
Jover Lee ,
Kairsten Fay ,
Misja Ilcisin ,
Elias Harkins ,
Trevor Bedford ,
Richard Neher ,
Emma Hodcroft
,
James Hadfield ,
Thomas Sibley ,
Jover Lee ,
Kairsten Fay ,
Misja Ilcisin ,
Elias Harkins ,
Trevor Bedford ,
Richard Neher ,
Emma Hodcroft
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens
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2020
Nicola F. Müller ,
Daniel Wüthrich,
Nina Goldman,
Nadine Sailer,
Claudia Saalfrank,
Myrta Brunner ,
Noémi Augustin,
Helena Mb Seth-Smith ,
Yvonne Hollenstein,
Mohammedyaseen Syedbasha,
Daniela Lang,
Richard A. Neher ,
Olivier Dubuis,
Michael Naegele,
Andreas Buser
and 10 other authors
,
Daniel Wüthrich,
Nina Goldman,
Nadine Sailer,
Claudia Saalfrank,
Myrta Brunner ,
Noémi Augustin,
Helena Mb Seth-Smith ,
Yvonne Hollenstein,
Mohammedyaseen Syedbasha,
Daniela Lang,
Richard A. Neher ,
Olivier Dubuis,
Michael Naegele,
Andreas Buser
and 10 other authors
Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics
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Robert Dyrdak,
Monika Mastafa,
Emma B. Hodcroft ,
Richard A. Neher ,
Jan Albert
,
Richard A. Neher ,
Jan Albert
Intra- and interpatient evolution of enterovirus D68 analyzed by whole-genome deep sequencing
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