Shan E. Ahmed Raza - Dissemin

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Papers authored by Shan E. Ahmed Raza

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2023 Quoc Dang Vu

ORCID

, Kashif Rajpoot, Shan E. Ahmed Raza

ORCID

, Nasir Rajpoot

Handcrafted Histological Transformer (H2T): Unsupervised representation of whole slide images

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This paper is made freely available by the publisher.

Johnathan Pocock

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, Shan E. Ahmed Raza

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, Fayyaz Minhas

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, Nasir Rajpoot

ORCID

WSIC: a Python package and command-line interface for fast whole slide image conversion

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Simon Graham

ORCID

ORCID

, Mostafa Jahanifar

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, Shan E. Ahmed Raza

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, Fayyaz Minhas, David Snead, Nasir Rajpoot

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One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification

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2022 Johnathan Pocock

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, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard

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, Raja Muhammad Saad Bashir, Mohsin Bilal

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, Wenqi Lu, David Epstein

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, Fayyaz Minhas

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, Nasir M. Rajpoot

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, Shan E. Ahmed Raza

ORCID

TIAToolbox as an end-to-end library for advanced tissue image analytics

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I. Nederlof

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, S. Hajizadeh, F. Sobhani

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, S. E. A. Raza

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, K. AbdulJabbar

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ORCID

, M. J. van de Vijver, R. Salgado

ORCID

ORCID

, M. Kok, Y. Yuan, H. M. Horlings

ORCID

Spatial interplay of lymphocytes and fibroblasts in estrogen receptor-positive HER2-negative breast cancer

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Raja Muhammad Saad Bashir

ORCID

, Muhammad Shaban

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, Shan E. Ahmed Raza

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, Syed Ali Khurram

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, Nasir Rajpoot

ORCID

A Novel Framework for Coarse-Grained Semantic Segmentation of Whole-Slide Images

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2021 Ruchika Verma

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ORCID

, Abhijeet Patil, Nikhil Cherian Kurian, Swapnil Rane, Simon Graham

ORCID

, Quoc Dang Vu, Mieke Zwager

ORCID

, Shan E. Ahmed Raza

ORCID

, Nasir Rajpoot, Xiyi Wu, Huai Chen, Yijie Huang, Lisheng Wang, Hyun Jung and 43 other authors

MoNuSAC2020: A Multi-Organ Nuclei Segmentation and Classification Challenge

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Muhammad Shaban

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, Shan E. Ahmed Raza

ORCID

, Mariam Hassan, Arif Jamshed, Sajid Mushtaq, Asif Loya, Nikolaos Batis, Jill Brooks, Paul Nankivell, Neil Sharma, Max Robinson, Hisham Mehanna, Syed Ali Khurram

ORCID

, Nasir Rajpoot

ORCID

A digital score of tumour‐associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma

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Priya Lakshmi Narayanan

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, Shan E. Ahmed Raza

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, Allison H. Hall, Jeffrey R. Marks, Lorraine King, Robert B. West, Lucia Hernandez, Naomi Guppy

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, Mitch Dowsett, Barry Gusterson, Carlo Maley, E. Shelley Hwang, Yinyin Yuan

Unmasking the immune microecology of ductal carcinoma in situ with deep learning

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Jessica M. Winfield

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, Jennifer C. Wakefield, James D. Brenton

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, Khalid AbdulJabbar, Antonella Savio, Susan Freeman, Erika Pace, Kerryn Lutchman-Singh, Katherine M. Vroobel, Yinyin Yuan, Susana Banerjee

ORCID

, Nuria Porta, Shan E. Ahmed Raza

ORCID

, Nandita M. deSouza

Biomarkers for site-specific response to neoadjuvant chemotherapy in epithelial ovarian cancer: relating MRI changes to tumour cell load and necrosis

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2020 Adam Pennycuick

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, Vitor H. Teixeira, Khalid AbdulJabbar

ORCID

, Shan E. Ahmed Raza

ORCID

, Tom Lund

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, Ayse U. Akarca

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, Rachel Rosenthal, Lukas Kalinke, Deepak P. Chandrasekharan

ORCID

, Christodoulos P. Pipinikas, Henry Lee-Six, Robert E. Hynds

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, Kate H. C. Gowers, Jake Y. Henry, Fraser R. Millar

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and 23 other authors

Immune Surveillance in Clinical Regression of Preinvasive Squamous Cell Lung Cancer

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H. Zhai, M. R. de Massy, Khalid AbdulJabbar, Officer L., Shan E. Ahmed Raza, , M. Jamal-Hanjani, J. Le Quesne, A. Hackshaw, S. A. Quezada, N. McGranahan, R. Rosenthal, Rachel Rosenthal, C. T. Hiley, S. Veeriah and 271 other authors

Geospatial immune variability illuminates differential evolution of lung adenocarcinoma

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2019 Simon Graham

ORCID

ORCID

, Shan E. Ahmed Raza

ORCID

, Ayesha Azam, Yee Wah Tsang, Jin Tae Kwak, Nasir Rajpoot

Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images

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Konstantinos Zormpas-Petridis, Henrik Failmezger, Shan E. Ahmed Raza

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, Ioannis Roxanis, Yann Jamin, Yinyin Yuan

Superpixel-Based Conditional Random Fields (SuperCRF): Incorporating Global and Local Context for Enhanced Deep Learning in Melanoma Histopathology

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Shan E. Ahmed Raza

ORCID

, Khalid AbdulJabbar, Mariam Jamal-Hanjani, Selvaraju Veeriah, John Le Quesne, Charles Swanton, Yinyin Yuan

Deconvolving Convolutional Neural Network for Cell Detection

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Shan E. Ahmed Raza

ORCID

, Linda Cheung, Muhammad Shaban, Simon Graham

ORCID

, David Epstein

ORCID

, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot

Micro-Net: A unified model for segmentation of various objects in microscopy images

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2018 Najah Alsubaie, Korsuk Sirinukunwattana, Shan E. Ahmed Raza

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, David Snead, Nasir M. Rajpoot

A bottom-up approach for tumour differentiation in whole slide images of lung adenocarcinoma

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2017 Shan E. Ahmed Raza, Shan E. Ahmed Raza

ORCID

, Linda Cheung, David Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot

MIMO-Net: A multi-input multi-output convolutional neural network for cell segmentation in fluorescence microscopy images

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Guannan Li, Shan-E.-Ahmed Raza

ORCID

, Nasir M. (Nasir Mahmood) Rajpoot

Multi-resolution cell orientation congruence descriptors for epithelium segmentation in endometrial histology images

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