All papers authored by Charles Swanton
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2023
Deborah R. Caswell 
,
Philippe Gui,
Manasi K. Mayekar,
Emily K. Law ,
Oriol Pich ,
Chris Bailey,
Jesse Boumelha ,
D. Lucas Kerr ,
Collin M. Blakely ,
Tadashi Manabe ,
Carlos Martinez-Ruiz,
Bjorn Bakker ,
Juan De Dios Palomino Villcas,
Natalie I. Vokes ,
Michelle Dietzen
and 70 other authors
,
Philippe Gui,
Manasi K. Mayekar,
Emily K. Law ,
Oriol Pich ,
Chris Bailey,
Jesse Boumelha ,
D. Lucas Kerr ,
Collin M. Blakely ,
Tadashi Manabe ,
Carlos Martinez-Ruiz,
Bjorn Bakker ,
Juan De Dios Palomino Villcas,
Natalie I. Vokes ,
Michelle Dietzen
and 70 other authors
The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance
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Kristiana Grigoriadis ,
Ariana Huebner ,
Abigail Bunkum ,
Emma Colliver ,
Alexander M. Frankell ,
Mark S. Hill,
Kerstin Thol ,
Nicolai J. Birkbak ,
Charles Swanton ,
Simone Zaccaria ,
Nicholas McGranahan
,
Ariana Huebner ,
Abigail Bunkum ,
Emma Colliver ,
Alexander M. Frankell ,
Mark S. Hill,
Kerstin Thol ,
Nicolai J. Birkbak ,
Charles Swanton ,
Simone Zaccaria ,
Nicholas McGranahan
CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction
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Hanyun Zhang ,
Khalid AbdulJabbar ,
David A. Moore ,
Ayse Akarca ,
Katey S. S. Enfield ,
Mariam Jamal-Hanjani ,
Shan E. Ahmed Raza ,
Selvaraju Veeriah ,
Roberto Salgado ,
Nicholas McGranahan ,
John Le Quesne ,
Charles Swanton ,
Teresa Marafioti ,
Yinyin Yuan
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,
Khalid AbdulJabbar ,
David A. Moore ,
Ayse Akarca ,
Katey S. S. Enfield ,
Mariam Jamal-Hanjani ,
Shan E. Ahmed Raza ,
Selvaraju Veeriah ,
Roberto Salgado ,
Nicholas McGranahan ,
John Le Quesne ,
Charles Swanton ,
Teresa Marafioti ,
Yinyin Yuan
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2022
Tom L. Kaufmann ,
Marina Petkovic ,
Thomas Bk K. Watkins ,
Emma C. Colliver ,
Sofya Laskina,
Nisha Thapa,
Darlan C. Minussi ,
Nicholas Navin ,
Charles Swanton ,
Peter Van Loo ,
Kerstin Haase ,
Maxime Tarabichi ,
Roland F. Schwarz
,
Marina Petkovic ,
Thomas Bk K. Watkins ,
Emma C. Colliver ,
Sofya Laskina,
Nisha Thapa,
Darlan C. Minussi ,
Nicholas Navin ,
Charles Swanton ,
Peter Van Loo ,
Kerstin Haase ,
Maxime Tarabichi ,
Roland F. Schwarz
MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution
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Filipe Correia Martins ,
Dominique-Laurent Couturier ,
Ines de Santiago ,
Carolin Margarethe Sauer ,
Maria Vias,
Mihaela Angelova ,
Deborah Sanders,
Anna Piskorz,
James Hall,
Karen Hosking,
Anumithra Amirthanayagam,
Sabina Cosulich,
Larissa Carnevalli ,
Barry Davies ,
Thomas B. K. Watkins
and 18 other authors
Download from doi.org
,
Dominique-Laurent Couturier ,
Ines de Santiago ,
Carolin Margarethe Sauer ,
Maria Vias,
Mihaela Angelova ,
Deborah Sanders,
Anna Piskorz,
James Hall,
Karen Hosking,
Anumithra Amirthanayagam,
Sabina Cosulich,
Larissa Carnevalli ,
Barry Davies ,
Thomas B. K. Watkins
and 18 other authors
Download from doi.org
King L. Hung ,
Jens Luebeck ,
Siavash R. Dehkordi,
Caterina I. Colón,
Rui Li,
Ivy Tsz-Lo Wong,
Ceyda Coruh,
Prashanthi Dharanipragada,
Shirley H. Lomeli,
Natasha E. Weiser ,
Gatien Moriceau,
Xiao Zhang ,
Chris Bailey,
Kathleen E. Houlahan,
Wenting Yang
and 11 other authors
,
Jens Luebeck ,
Siavash R. Dehkordi,
Caterina I. Colón,
Rui Li,
Ivy Tsz-Lo Wong,
Ceyda Coruh,
Prashanthi Dharanipragada,
Shirley H. Lomeli,
Natasha E. Weiser ,
Gatien Moriceau,
Xiao Zhang ,
Chris Bailey,
Kathleen E. Houlahan,
Wenting Yang
and 11 other authors
Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH
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Joshua T. Lange ,
John C. Rose ,
Celine Y. Chen ,
Yuriy Pichugin,
Liangqi Xie,
Jun Tang,
King L. Hung ,
Kathryn E. Yost,
Quanming Shi,
Marcella L. Erb,
Utkrisht Rajkumar,
Sihan Wu ,
Sabine Taschner-Mandl ,
Marie Bernkopf ,
Charles Swanton
and 7 other authors
,
John C. Rose ,
Celine Y. Chen ,
Yuriy Pichugin,
Liangqi Xie,
Jun Tang,
King L. Hung ,
Kathryn E. Yost,
Quanming Shi,
Marcella L. Erb,
Utkrisht Rajkumar,
Sihan Wu ,
Sabine Taschner-Mandl ,
Marie Bernkopf ,
Charles Swanton
and 7 other authors
The evolutionary dynamics of extrachromosomal DNA in human cancers
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Jesse Boumelha ,
Sophie de Carné Trécesson ,
Emily K. Law ,
Pablo Romero-Clavijo ,
Matthew A. Coelho,
Kevin W. Ng ,
Edurne Mugarza ,
Christopher Moore ,
Sareena Rana,
Deborah R. Caswell ,
Miguel Murillo ,
David C. Hancock,
Prokopios P. Argyris ,
William L. Brown ,
Cameron Durfee
and 11 other authors
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,
Sophie de Carné Trécesson ,
Emily K. Law ,
Pablo Romero-Clavijo ,
Matthew A. Coelho,
Kevin W. Ng ,
Edurne Mugarza ,
Christopher Moore ,
Sareena Rana,
Deborah R. Caswell ,
Miguel Murillo ,
David C. Hancock,
Prokopios P. Argyris ,
William L. Brown ,
Cameron Durfee
and 11 other authors
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Kevin W. Ng ,
Nikhil Faulkner ,
Katja Finsterbusch,
Mary Wu ,
Ruth Harvey,
Saira Hussain ,
Maria Greco,
Yafei Liu,
Svend Kjaer ,
Charles Swanton ,
Sonia Gandhi,
Rupert Beale ,
Steve J. Gamblin ,
Peter Cherepanov ,
John McCauley
and 6 other authors
,
Nikhil Faulkner ,
Katja Finsterbusch,
Mary Wu ,
Ruth Harvey,
Saira Hussain ,
Maria Greco,
Yafei Liu,
Svend Kjaer ,
Charles Swanton ,
Sonia Gandhi,
Rupert Beale ,
Steve J. Gamblin ,
Peter Cherepanov ,
John McCauley
and 6 other authors
SARS-CoV-2 S2–targeted vaccination elicits broadly neutralizing antibodies
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William Grey ,
Ana Rio-Machin ,
Pedro Casado ,
Eva Grönroos ,
Sara Ali,
Juho J. Miettinen ,
Findlay Bewicke-Copley ,
Alun Parsons,
Caroline A. Heckman ,
Charles Swanton ,
Pedro R. Cutillas ,
John Gribben ,
Jude Fitzgibbon ,
Dominique Bonnet
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,
Ana Rio-Machin ,
Pedro Casado ,
Eva Grönroos ,
Sara Ali,
Juho J. Miettinen ,
Findlay Bewicke-Copley ,
Alun Parsons,
Caroline A. Heckman ,
Charles Swanton ,
Pedro R. Cutillas ,
John Gribben ,
Jude Fitzgibbon ,
Dominique Bonnet
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Shaolong Cao,
Jennifer R. Wang ,
Shuangxi Ji,
Peng Yang ,
Yaoyi Dai,
Shuai Guo,
Matthew D. Montierth ,
John Paul Shen,
Xiao Zhao,
Jingxiao Chen,
Jaewon James Lee,
Paola A. Guerrero,
Nicholas Spetsieris,
Nikolai Engedal ,
Sinja Taavitsainen
and 26 other authors
,
Shuangxi Ji,
Peng Yang ,
Yaoyi Dai,
Shuai Guo,
Matthew D. Montierth ,
John Paul Shen,
Xiao Zhao,
Jingxiao Chen,
Jaewon James Lee,
Paola A. Guerrero,
Nicholas Spetsieris,
Nikolai Engedal ,
Sinja Taavitsainen
and 26 other authors
Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression
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2021
Febe van Maldegem ,
Karishma Valand ,
Megan Cole ,
Harshil Patel ,
Mihaela Angelova ,
Sareena Rana,
Emma Colliver ,
Katey Enfield ,
Nourdine Bah,
Gavin Kelly ,
Victoria Siu Kwan Tsang ,
Edurne Mugarza ,
Christopher Moore ,
Philip Hobson,
Dina Levi
and 3 other authors
Download from doi.org
,
Karishma Valand ,
Megan Cole ,
Harshil Patel ,
Mihaela Angelova ,
Sareena Rana,
Emma Colliver ,
Katey Enfield ,
Nourdine Bah,
Gavin Kelly ,
Victoria Siu Kwan Tsang ,
Edurne Mugarza ,
Christopher Moore ,
Philip Hobson,
Dina Levi
and 3 other authors
Download from doi.org
Guangchun Han ,
Guoliang Yang,
Dapeng Hao,
Yang Lu ,
Kyaw Thein ,
Benjamin S. Simpson ,
Jianfeng Chen,
Ryan Sun,
Omar Alhalabi ,
Ruiping Wang,
Minghao Dang,
Enyu Dai,
Shaojun Zhang,
Fengqi Nie,
Shuangtao Zhao
and 17 other authors
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,
Guoliang Yang,
Dapeng Hao,
Yang Lu ,
Kyaw Thein ,
Benjamin S. Simpson ,
Jianfeng Chen,
Ryan Sun,
Omar Alhalabi ,
Ruiping Wang,
Minghao Dang,
Enyu Dai,
Shaojun Zhang,
Fengqi Nie,
Shuangtao Zhao
and 17 other authors
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Min Zhang,
Jin-Li Luo,
Qianqian Sun,
James Harber,
Alan G. Dawson ,
Apostolos Nakas,
Sara Busacca,
Annabel J. Sharkey ,
David Waller,
Michael T. Sheaff,
Cathy Richards,
Peter Wells-Jordan,
Aarti Gaba,
Charlotte Poile,
Essa Y. Baitei
and 20 other authors
Download from doi.org
,
Apostolos Nakas,
Sara Busacca,
Annabel J. Sharkey ,
David Waller,
Michael T. Sheaff,
Cathy Richards,
Peter Wells-Jordan,
Aarti Gaba,
Charlotte Poile,
Essa Y. Baitei
and 20 other authors
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Emiliano Maiani ,
Giacomo Milletti ,
Francesca Nazio,
Søs Grønbæk Holdgaard,
Jirina Bartkova,
Salvatore Rizza ,
Valentina Cianfanelli ,
Mar Lorente,
Daniele Simoneschi ,
Miriam Di Marco,
Pasquale D’Acunzo ,
Luca Di Leo ,
Rikke Rasmussen,
Costanza Montagna,
Marilena Raciti
and 31 other authors
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Giacomo Milletti ,
Francesca Nazio,
Søs Grønbæk Holdgaard,
Jirina Bartkova,
Salvatore Rizza ,
Valentina Cianfanelli ,
Mar Lorente,
Daniele Simoneschi ,
Miriam Di Marco,
Pasquale D’Acunzo ,
Luca Di Leo ,
Rikke Rasmussen,
Costanza Montagna,
Marilena Raciti
and 31 other authors
AMBRA1 regulates cyclin D to guard S-phase entry and genomic integrity
Download from www.nature.com
Min Zhang,
Jin-Li Luo,
Qianqian Sun,
James Harber,
Alan G. Dawson ,
Apostolos Nakas,
Sara Busacca,
Annabel J. Sharkey ,
David Waller,
Michael T. Sheaff,
Cathy Richards,
Peter Wells-Jordan,
Aarti Gaba,
Charlotte Poile,
Essa Y. Baitei
and 21 other authors
,
Apostolos Nakas,
Sara Busacca,
Annabel J. Sharkey ,
David Waller,
Michael T. Sheaff,
Cathy Richards,
Peter Wells-Jordan,
Aarti Gaba,
Charlotte Poile,
Essa Y. Baitei
and 21 other authors
Clonal architecture in mesothelioma is prognostic and shapes the tumour microenvironment
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Robert E. Hynds ,
Kristopher K. Frese ,
David R. Pearce ,
Eva Grönroos ,
Caroline Dive ,
Charles Swanton
,
Kristopher K. Frese ,
David R. Pearce ,
Eva Grönroos ,
Caroline Dive ,
Charles Swanton
Progress towards non-small-cell lung cancer models that represent clinical evolutionary trajectories
Download from royalsocietypublishing.org
2020
Jun Li,
Mercedes A. Duran,
Ninjit Dhanota,
Walid K. Chatila,
Sarah E. Bettigole,
John Kwon,
Roshan K. Sriram,
Matthew Philip Humphries ,
Manuel Salto-Tellez ,
Jacqueline A. James ,
Matthew G. Hanna ,
Johannes C. Melms ,
Sreeram Vallabhaneni,
Kevin Litchfield,
Ieva Usaite
and 26 other authors
,
Manuel Salto-Tellez ,
Jacqueline A. James ,
Matthew G. Hanna ,
Johannes C. Melms ,
Sreeram Vallabhaneni,
Kevin Litchfield,
Ieva Usaite
and 26 other authors
Metastasis and immune evasion from extracellular cGAMP hydrolysis
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Kevin W. Ng ,
Nikhil Faulkner ,
Georgina H. Cornish ,
Annachiara Rosa ,
Ruth Harvey,
Saira Hussain ,
Rachel Ulferts,
Christopher Earl ,
Antoni G. Wrobel ,
Donald J. Benton ,
Chloe Roustan ,
William Bolland,
Rachael Thompson,
Ana Agua-Doce ,
Philip Hobson
and 32 other authors
,
Nikhil Faulkner ,
Georgina H. Cornish ,
Annachiara Rosa ,
Ruth Harvey,
Saira Hussain ,
Rachel Ulferts,
Christopher Earl ,
Antoni G. Wrobel ,
Donald J. Benton ,
Chloe Roustan ,
William Bolland,
Rachael Thompson,
Ana Agua-Doce ,
Philip Hobson
and 32 other authors
Preexisting and de novo humoral immunity to SARS-CoV-2 in humans
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