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All papers authored by Nathan Johnson

This paper is made freely available by the publisher.

2021 Steve Rodriguez, Clemens Hug

ORCID

, Petar Todorov

ORCID

ORCID

, Sarah A. Boswell

ORCID

, Kyle Evans, George Zhou

ORCID

, Nathan T. Johnson

ORCID

, Bradley T. Hyman

ORCID

, Peter K. Sorger

ORCID

, Mark W. Albers

ORCID

, Artem Sokolov

ORCID

Machine learning identifies candidates for drug repurposing in Alzheimer’s disease

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2020 Anita K. Mehta, Emily M. Cheney, Christina A. Hartl, Constantia Pantelidou

ORCID

, Madisson Oliwa, Jessica A. Castrillon, Jia-Ren Lin

ORCID

, Katie E. Hurst, Mateus de Oliveira Taveira

ORCID

, Nathan T. Johnson

ORCID

, William M. Oldham

ORCID

, Marian Kalocsay

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, Matthew J. Berberich, Sarah A. Boswell

ORCID

, Aditi Kothari and 13 other authors

Targeting immunosuppressive macrophages overcomes PARP inhibitor resistance in BRCA1-associated triple-negative breast cancer

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Suhas Srinivasan, Anastasia Leshchyk, Nathan J. Johnson

ORCID

, Nathan T. Johnson, Dmitry Korkin

ORCID

A Hybrid Deep Clustering Approach for Robust Cell Type Profiling Using Single-cell RNA-seq Data

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Steve Rodriguez, Petar Todorov, Nienke Moret, Clemens Hug, George Zhou

ORCID

, Sarah A. Boswell, Kyle Evans, Peter K. Sorger, Nathan T. Johnson

ORCID

, Brad Hyman, Artem Sokolov, Mark W. Albers

Machine Learning Identifies Novel Candidates for Drug Repurposing in Alzheimer’s Disease

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Olksandr Narykov, Nathan T. Johnson

ORCID

, Dmitry Korkin

ORCID

Predicting Protein Interaction Network Perturbation by Alternative Splicing with Semi-Supervised Learning

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2019 Jitao D. Zhang, Sarvenaz Choobdar, Ahsen Me, Mattia Tomasoni, David Lamparter, Aravind Subramanian, Junyuan Lin, Gustavo Stolovitzky, Zoltán Kutalik, Jake Crawford, Johnathan Mercer, Kasper Lage, Donna K. Slonim, Ted Natoli, Tao Fang and 10 other authors

Assessment of network module identification across complex diseases.

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2018 Rick E. Masonbrink, Thomas R. Maier, Usha Muppirala, Arun S. Seetharam, Etienne Lord, Parijat S. Juvale, Jeremy Schmutz, Nathan T. Johnson

ORCID

, Dmitry Korkin, Sebastian Eves-Van den Akker, Melissa G. Mitchum, Benjamin Mimee, Sebastian Eves-Van den Akker, Matthew Hudson, Andrew J. Severin and 1 other authors

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

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Nathan T. Johnson

ORCID

, Andi Dhroso, Katelyn J. Hughes, Dmitry Korkin

ORCID

Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?

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Michael Gardner, Andi Dhroso, Nathan Johnson

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, Eric L. Davis, Thomas J. Baum, Dmitry Korkin, Melissa G. Mitchum

ORCID

Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines

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This paper was not found in any repository; the policy of its publisher is unknown or unclear.

Oleksandr Narykov, Dmitry Korkin, Nathan Johnson

ORCID

Determining rewiring effects of alternatively spliced isoforms on protein-protein interactions using a computational approach

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2017 Md Almamun, Olha Kholod, Alexei J. Stuckel, Benjamin T. Levinson, Nathan T. Johnson

ORCID

, Gerald L. Arthur, J. Wade Davis, Kristen H. Taylor

Inferring a role for methylation of intergenic DNA in the regulation of genes aberrantly expressed in precursor B-cell acute lymphoblastic leukemia

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2015 Md Almamun, Benjamin T. Levinson, Annette C. van Swaay, Nathan T. Johnson

ORCID

, Stephanie D. McKay, Gerald L. Arthur, J. Wade Davis, Kristen H. Taylor

Integrated methylome and transcriptome analysis reveals novel regulatory elements in pediatric acute lymphoblastic leukemia

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Hongzhu Cui, Andi Dhroso, Nathan Johnson

ORCID

, Dmitry Korkin

The variation game: Cracking complex genetic disorders with NGS and omics data

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2011 Elizabeth C. Bryda, Nathan T. Johnson

ORCID

, Kevin K. Ohlemiller, Cynthia L. Besch Williford, Elizabeth Moore, Richard J. Bram

Conditional deletion of calcium-modulating cyclophilin ligand causes deafness in mice

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