All papers authored by Muzlifah Haniffa
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2024
Felix Drost 
,
Yang An ,
Irene Bonafonte-Pardàs,
Lisa M. Dratva ,
Rik G. H. Lindeboom ,
Muzlifah Haniffa ,
Sarah A. Teichmann ,
Fabian Theis ,
Mohammad Lotfollahi ,
Benjamin Schubert
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,
Yang An ,
Irene Bonafonte-Pardàs,
Lisa M. Dratva ,
Rik G. H. Lindeboom ,
Muzlifah Haniffa ,
Sarah A. Teichmann ,
Fabian Theis ,
Mohammad Lotfollahi ,
Benjamin Schubert
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2023
Johanna Strobl ,
Laura M. Gail ,
Laura Krecu ,
Shaista Madad ,
Lisa Kleissl ,
Luisa Unterluggauer ,
Anna Redl ,
Kveta Brazdilova ,
Simona Saluzzo ,
Philipp Wohlfarth ,
Hanna A. Knaus ,
Margit Mitterbauer ,
Werner Rabitsch ,
Muzlifah Haniffa ,
Georg Stary
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,
Laura M. Gail ,
Laura Krecu ,
Shaista Madad ,
Lisa Kleissl ,
Luisa Unterluggauer ,
Anna Redl ,
Kveta Brazdilova ,
Simona Saluzzo ,
Philipp Wohlfarth ,
Hanna A. Knaus ,
Margit Mitterbauer ,
Werner Rabitsch ,
Muzlifah Haniffa ,
Georg Stary
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Issac Goh ,
Rachel A. Botting ,
Antony Rose ,
Simone Webb ,
Justin Engelbert ,
Yorick Gitton ,
Emily Stephenson ,
Mariana Quiroga Londoño ,
Michael Mather,
Nicole Mende ,
Ivan Imaz-Rosshandler ,
Lu Yang ,
Dave Horsfall ,
Daniela Basurto-Lozada ,
Nana-Jane Chipampe
and 46 other authors
,
Rachel A. Botting ,
Antony Rose ,
Simone Webb ,
Justin Engelbert ,
Yorick Gitton ,
Emily Stephenson ,
Mariana Quiroga Londoño ,
Michael Mather,
Nicole Mende ,
Ivan Imaz-Rosshandler ,
Lu Yang ,
Dave Horsfall ,
Daniela Basurto-Lozada ,
Nana-Jane Chipampe
and 46 other authors
Yolk sac cell atlas reveals multiorgan functions during human early development
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Josh Moore ,
Daniela Basurto-Lozada ,
Daniela Basurto Lozada,
Sébastien Besson ,
John Bogovic ,
Jordão Bragantini ,
Eva Maxfield Brown ,
Jean-Marie Burel ,
Xavier Casas Moreno ,
Xavier Casas Moreno,
Gustavo Quintas Glasner de Medeiros ,
Erin E. Diel ,
David Gault,
Satrajit S. Ghosh ,
Ilan Gold
and 58 other authors
,
Daniela Basurto-Lozada ,
Daniela Basurto Lozada,
Sébastien Besson ,
John Bogovic ,
Jordão Bragantini ,
Eva Maxfield Brown ,
Jean-Marie Burel ,
Xavier Casas Moreno ,
Xavier Casas Moreno,
Gustavo Quintas Glasner de Medeiros ,
Erin E. Diel ,
David Gault,
Satrajit S. Ghosh ,
Ilan Gold
and 58 other authors
OME-Zarr: a cloud-optimized bioimaging file format with international community support
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Shuang A. Guo ,
Georgina S. Bowyer ,
John R. Ferdinand ,
Mailis Maes ,
Zewen K. Tuong ,
Eleanor Gillman ,
Mingfeng Liao,
Rik G. H. Lindeboom ,
Masahiro Yoshida ,
Kaylee Worlock ,
Hudaa Gopee ,
Emily Stephenson ,
Catherine A. Gao ,
Paul A. Lyons ,
Kenneth G. C. Smith
and 11 other authors
,
Georgina S. Bowyer ,
John R. Ferdinand ,
Mailis Maes ,
Zewen K. Tuong ,
Eleanor Gillman ,
Mingfeng Liao,
Rik G. H. Lindeboom ,
Masahiro Yoshida ,
Kaylee Worlock ,
Hudaa Gopee ,
Emily Stephenson ,
Catherine A. Gao ,
Paul A. Lyons ,
Kenneth G. C. Smith
and 11 other authors
Obesity Is Associated with Attenuated Tissue Immunity in COVID-19
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Laura J. Pallett ,
Leo Swadling ,
Mariana Diniz,
Alexander A. Maini,
Marius Schwabenland ,
Adrià Dalmau Gasull ,
Jessica Davies,
Stephanie Kucykowicz ,
Jessica K. Skelton,
Niclas Thomas,
Nathalie M. Schmidt ,
Oliver E. Amin,
Upkar S. Gill,
Kerstin A. Stegmann,
Alice R. Burton
and 28 other authors
,
Leo Swadling ,
Mariana Diniz,
Alexander A. Maini,
Marius Schwabenland ,
Adrià Dalmau Gasull ,
Jessica Davies,
Stephanie Kucykowicz ,
Jessica K. Skelton,
Niclas Thomas,
Nathalie M. Schmidt ,
Oliver E. Amin,
Upkar S. Gill,
Kerstin A. Stegmann,
Alice R. Burton
and 28 other authors
Tissue CD14+CD8+ T cells reprogrammed by myeloid cells and modulated by LPS
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2022
Josephine L. Barnes ,
Peng He ,
Masahiro Yoshida ,
Kaylee B. Worlock,
Rik G. H. Lindeboom ,
Chenqu Suo ,
J. Patrick Pett ,
J. Patrick Pett,
Anna Wilbrey-Clark ,
Emma Dann ,
Lira Mamanova ,
Laura Richardson ,
Adam Pennycuick ,
Jessica Allen-Hyttinen ,
Iván T. Herczeg
and 19 other authors
,
Peng He ,
Masahiro Yoshida ,
Kaylee B. Worlock,
Rik G. H. Lindeboom ,
Chenqu Suo ,
J. Patrick Pett ,
J. Patrick Pett,
Anna Wilbrey-Clark ,
Emma Dann ,
Lira Mamanova ,
Laura Richardson ,
Adam Pennycuick ,
Jessica Allen-Hyttinen ,
Iván T. Herczeg
and 19 other authors
Early human lung immune cell development and its role in epithelial cell fate
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Chenqu Suo ,
Emma Dann ,
Tuong Zk,
Issac Goh ,
Laura Jardine ,
Rachel A. Botting ,
Vitalii Kleshchevnikov ,
Jong-Eun Park ,
Zewen Kelvin Tuong ,
Emily Stephenson ,
Justin Engelbert,
Botting Ra,
Rasa Elmentaite ,
Cecilia Domínguez Conde ,
Krzysztof Polanski
and 17 other authors
,
Emma Dann ,
Tuong Zk,
Issac Goh ,
Laura Jardine ,
Rachel A. Botting ,
Vitalii Kleshchevnikov ,
Jong-Eun Park ,
Zewen Kelvin Tuong ,
Emily Stephenson ,
Justin Engelbert,
Botting Ra,
Rasa Elmentaite ,
Cecilia Domínguez Conde ,
Krzysztof Polanski
and 17 other authors
Mapping the developing human immune system across organs
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Eleonora Khabirova ,
Laura Jardine ,
Tim H. H. Coorens ,
Simone Webb ,
Taryn D. Treger,
Justin Engelbert ,
Tarryn Porter,
Elena Prigmore ,
Grace Collord,
Alice Piapi ,
Sarah A. Teichmann ,
Sarah Inglott,
Owen Williams ,
Olaf Heidenreich ,
Matthew D. Young
and 5 other authors
Download from www.nature.com
,
Laura Jardine ,
Tim H. H. Coorens ,
Simone Webb ,
Taryn D. Treger,
Justin Engelbert ,
Tarryn Porter,
Elena Prigmore ,
Grace Collord,
Alice Piapi ,
Sarah A. Teichmann ,
Sarah Inglott,
Owen Williams ,
Olaf Heidenreich ,
Matthew D. Young
and 5 other authors
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Tim H. H. Coorens ,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
Gordon C. S. Smith ,
Sam Behjati
,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
Gordon C. S. Smith ,
Sam Behjati
Author Correction: Inherent mosaicism and extensive mutation of human placentas
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2021
Catherine F. Hatton ,
Rachel A. Botting ,
Maria Emilia Dueñas ,
Iram J. Haq ,
Bernard Verdon ,
Benjamin J. Thompson ,
Jarmila Stremenova Spegarova ,
Florian Gothe ,
Emily Stephenson,
Aaron I. Gardner ,
Sandra Murphy ,
Jonathan Scott,
James P. Garnett ,
Sean Carrie,
Jason Powell
and 15 other authors
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,
Rachel A. Botting ,
Maria Emilia Dueñas ,
Iram J. Haq ,
Bernard Verdon ,
Benjamin J. Thompson ,
Jarmila Stremenova Spegarova ,
Florian Gothe ,
Emily Stephenson,
Aaron I. Gardner ,
Sandra Murphy ,
Jonathan Scott,
James P. Garnett ,
Sean Carrie,
Jason Powell
and 15 other authors
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Katy Börner ,
Sarah A. Teichmann ,
Ellen M. Quardokus,
James C. Gee,
Kristen Browne,
David Osumi-Sutherland,
Bruce W. Herr ,
Andreas Bueckle ,
Hrishikesh Paul,
Muzlifah Haniffa ,
Laura Jardine,
Amy Bernard ,
Song-Lin Ding,
Jeremy A. Miller,
Shin Lin
and 21 other authors
,
Sarah A. Teichmann ,
Ellen M. Quardokus,
James C. Gee,
Kristen Browne,
David Osumi-Sutherland,
Bruce W. Herr ,
Andreas Bueckle ,
Hrishikesh Paul,
Muzlifah Haniffa ,
Laura Jardine,
Amy Bernard ,
Song-Lin Ding,
Jeremy A. Miller,
Shin Lin
and 21 other authors
Anatomical structures, cell types and biomarkers of the Human Reference Atlas
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Laura Jardine,
Simone Webb ,
Issac Goh ,
Mariana Quiroga Londoño ,
Gary Reynolds,
Michael Mather ,
Bayanne Olabi,
Emily Stephenson,
Rachel A. Botting ,
Dave Horsfall ,
Justin Engelbert ,
Daniel Maunder,
Nicole Mende ,
Caitlin Murnane,
Emma Dann
and 49 other authors
,
Issac Goh ,
Mariana Quiroga Londoño ,
Gary Reynolds,
Michael Mather ,
Bayanne Olabi,
Emily Stephenson,
Rachel A. Botting ,
Dave Horsfall ,
Justin Engelbert ,
Daniel Maunder,
Nicole Mende ,
Caitlin Murnane,
Emma Dann
and 49 other authors
Blood and immune development in human fetal bone marrow and Down syndrome
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Rasa Elmentaite ,
Stijn van Dongen,
Natsuhiko Kumasaka ,
King Hw,
Kenny Roberts ,
Hamish W. King ,
Monika Dabrowska,
Vitalii Kleshchevnikov,
Sophie Pritchard,
Vieira Sf,
Liam Bolt ,
Aaron Fleming,
Lira Mamanova ,
Sara F. Vieira ,
Emma Dann
and 44 other authors
,
Stijn van Dongen,
Natsuhiko Kumasaka ,
King Hw,
Kenny Roberts ,
Hamish W. King ,
Monika Dabrowska,
Vitalii Kleshchevnikov,
Sophie Pritchard,
Vieira Sf,
Liam Bolt ,
Aaron Fleming,
Lira Mamanova ,
Sara F. Vieira ,
Emma Dann
and 44 other authors
Cells of the human intestinal tract mapped across space and time
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Matthew D. Young ,
Ronald R. de Krijger,
Marry M. van den Heuvel-Eibrink ,
Anna Wilbrey-Clark,
Anne Warren ,
Thomas J. Mitchell ,
Young Md,
Francisco Morales-Rodriguez,
Lars Custers ,
Mitchell Tj,
Thomas R. W. Oliver ,
Thanasis Margaritis,
Federico Comitani ,
Alice Piapi ,
Eva Bugallo-Blanco
and 35 other authors
,
Ronald R. de Krijger,
Marry M. van den Heuvel-Eibrink ,
Anna Wilbrey-Clark,
Anne Warren ,
Thomas J. Mitchell ,
Young Md,
Francisco Morales-Rodriguez,
Lars Custers ,
Mitchell Tj,
Thomas R. W. Oliver ,
Thanasis Margaritis,
Federico Comitani ,
Alice Piapi ,
Eva Bugallo-Blanco
and 35 other authors
Single cell derived mRNA signals across human kidney tumors
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Tim H. H. Coorens ,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
D. Stephen Charnock Jones,
Gordon Cs S. Smith ,
Sam Behjati
,
Thomas R. W. Oliver ,
Rashesh Sanghvi ,
Ulla Sovio ,
Emma Cook ,
Roser Vento-Tormo ,
Muzlifah Haniffa ,
Matthew D. Young,
Raheleh Rahbari ,
Neil Sebire,
Peter J. Campbell ,
D. Stephen Charnock-Jones ,
D. Stephen Charnock Jones,
Gordon Cs S. Smith ,
Sam Behjati
Inherent mosaicism and extensive mutation of human placentas
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Matthew D. Young ,
Sander R. van Hooff,
Max M. van Noesel,
Ignacio del Valle ,
Reinier van der Linden ,
Ronald R. de Krijger,
Waleed M. Kholosy ,
Gerda Kildisiute ,
Kholosy Wm,
Clarissa N. Pacyna ,
Kenny Roberts ,
Young Md,
Rasa Elmentaite ,
Eva Bugallo-Blanco ,
Kaylee M. Keller
and 28 other authors
,
Sander R. van Hooff,
Max M. van Noesel,
Ignacio del Valle ,
Reinier van der Linden ,
Ronald R. de Krijger,
Waleed M. Kholosy ,
Gerda Kildisiute ,
Kholosy Wm,
Clarissa N. Pacyna ,
Kenny Roberts ,
Young Md,
Rasa Elmentaite ,
Eva Bugallo-Blanco ,
Kaylee M. Keller
and 28 other authors
Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
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Gary Reynolds ,
Peter Vegh ,
James Fletcher ,
Elizabeth F. M. Poyner ,
Emily Stephenson ,
Issac Goh ,
Rachel A. Botting ,
Ni Huang ,
Bayanne Olabi ,
Anna Dubois ,
David Dixon ,
Kile Green ,
Daniel Maunder,
Justin Engelbert ,
Mirjana Efremova
and 35 other authors
,
Peter Vegh ,
James Fletcher ,
Elizabeth F. M. Poyner ,
Emily Stephenson ,
Issac Goh ,
Rachel A. Botting ,
Ni Huang ,
Bayanne Olabi ,
Anna Dubois ,
David Dixon ,
Kile Green ,
Daniel Maunder,
Justin Engelbert ,
Mirjana Efremova
and 35 other authors
Developmental cell programs are co-opted in inflammatory skin disease
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2020
Laura Jardine ,
Merry Gunawan,
Gary Reynolds ,
Xiao-Nong Wang,
Sarah Pagan,
Maharani Paramitha,
Christopher A. Lamb,
Anna K. Long,
Erin Hurst,
Smeera Nair,
Graham H. Jackson,
Amy Publicover,
Muzlifah Haniffa ,
Aj J. Simpson,
Urszula Cytlak
and 3 other authors
,
Merry Gunawan,
Gary Reynolds ,
Xiao-Nong Wang,
Sarah Pagan,
Maharani Paramitha,
Christopher A. Lamb,
Anna K. Long,
Erin Hurst,
Smeera Nair,
Graham H. Jackson,
Amy Publicover,
Muzlifah Haniffa ,
Aj J. Simpson,
Urszula Cytlak
and 3 other authors
Donor monocyte-derived macrophages promote human acute graft versus host disease
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Jong-Eun Park ,
Rachel A. Botting ,
Cecilia Domínguez Conde ,
Daniel J. Kunz ,
Botting Ra,
Dorin-Mirel Popescu,
Issac Goh ,
Marieke Lavaert ,
Conde Cd,
Emily Stephenson ,
Kenny Roberts ,
Roberta Ragazzini ,
Veronika R. Kedlian ,
Fabrizio de Rita ,
John R. Ferdinand
and 32 other authors
,
Rachel A. Botting ,
Cecilia Domínguez Conde ,
Daniel J. Kunz ,
Botting Ra,
Dorin-Mirel Popescu,
Issac Goh ,
Marieke Lavaert ,
Conde Cd,
Emily Stephenson ,
Kenny Roberts ,
Roberta Ragazzini ,
Veronika R. Kedlian ,
Fabrizio de Rita ,
John R. Ferdinand
and 32 other authors
A cell atlas of human thymic development defines T cell repertoire formation
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