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Springer, Histochemistry and Cell Biology, 3(160), p. 223-251, 2023

DOI: 10.1007/s00418-023-02209-1

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OME-Zarr: a cloud-optimized bioimaging file format with international community support

Journal article published in 2023 by Josh Moore ORCID, Daniela Basurto-Lozada ORCID, Daniela Basurto Lozada, Sébastien Besson ORCID, John Bogovic ORCID, Jordão Bragantini ORCID, Eva Maxfield Brown ORCID, Jean-Marie Burel ORCID, Xavier Casas Moreno ORCID, Xavier Casas Moreno, Gustavo Quintas Glasner de Medeiros ORCID, Erin E. Diel ORCID, David Gault, Satrajit S. Ghosh ORCID, Ilan Gold ORCID and other authors.
This paper was not found in any repository, but could be made available legally by the author.
This paper was not found in any repository, but could be made available legally by the author.

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Abstract

AbstractA growing community is constructing a next-generation file format (NGFF) for bioimaging to overcome problems of scalability and heterogeneity. Organized by the Open Microscopy Environment (OME), individuals and institutes across diverse modalities facing these problems have designed a format specification process (OME-NGFF) to address these needs. This paper brings together a wide range of those community members to describe the cloud-optimized format itself—OME-Zarr—along with tools and data resources available today to increase FAIR access and remove barriers in the scientific process. The current momentum offers an opportunity to unify a key component of the bioimaging domain—the file format that underlies so many personal, institutional, and global data management and analysis tasks.