Alexandre M. J. J. Bonvin

Papers authored by Alexandre M. J. J. Bonvin

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2010 Marc van Dijk, Alexandre M. J. J. Bonvin

Pushing the limits of what is achievable in protein-DNA docking: benchmarking HADDOCK's performance

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Panagiotis L. Kastritis

, Alexandre M. J. J. Bonvin

Are Scoring Functions in Protein−Protein Docking Ready to Predict Interactomes? Clues from a Novel Binding Affinity Benchmark

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Sjoerd J. de Vries, Marc van Dijk, Alexandre M. J. J. Bonvin

The HADDOCK web server for data-driven biomolecular docking

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Masakazu Kobayashi, Eiso Ab, Alexander M. J. J. Bonvin

, Gregg Siegal

Structure of the DNA-bound BRCA1 C-terminal Region from Human Replication Factor C p140 and Model of the Protein-DNA Complex

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Alexandre M. J. J. Bonvin

, Antonio Rosato, Tsjerk A. Wassenaar

The eNMR platform for structural biology

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Mickael Krzeminski, Karine Loth, Rolf Boelens, Alexandre Mjj J. J. Bonvin

SAMPLEX: Automatic mapping of perturbed and unperturbed regions of proteins and complexes

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2009 Antonio Rosato, Anurag Bagaria, David Baker, Benjamin Bardiaux, Andrea Cavalli, Jurgen F. Doreleijers, Andrea Giachetti, Paul Guerry, Peter Güntert, Torsten Herrmann, Yuanpeng J. Huang, Hendrik R. A. Jonker, Binchen Mao, Therese E. Malliavin, Gaetano T. Montelione and 6 other authors

CASD-NMR: critical assessment of automated structure determination by NMR

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Dirk Eggink

, Johannes P. M. Langedijk, Alexandre M. J. J. Bonvin

, Yiqun Deng, Min Lu, Ben Berkhout, Rogier W. Sanders

Detailed Mechanistic Insights into HIV-1 Sensitivity to Three Generations of Fusion Inhibitors

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This paper was not found in any repository, but could be made available legally by the author.

Julija Romanuka, Gert E. Folkers, Nikolaos Biris, Evgeny Tishchenko, Hans Wienk, Alexandre M. J. J. Bonvin

, Robert Kaptein, Rolf Boelens

Specificity and Affinity of Lac Repressor for the Auxiliary Operators O2 and O3 Are Explained by the Structures of Their Protein–DNA Complexes

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Marc van Dijk, Alexandre M. J. J. Bonvin

3D-DART: a DNA structure modelling server

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Kostas Repanas, Gloria Fuentes, Serge X. Cohen, Alexandre M. J. J. Bonvin

, Anastassis Perrakis

Insights into the DNA cleavage mechanism of human LINE-1 retrotransposon endonuclease

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Mickael Krzeminski, Gloria Fuentes, Rolf Boelens, Alexandre M. J. J. Bonvin

MINOES: A new approach to select a representative ensemble of structures in NMR studies of (partially) unfolded states. Application to Δ25-PYP

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Lucy Rutten, Jean-Paul B. A. Mannie, Christopher M. Stead, Christian R. H. Raetz, C. Michael Reynolds, M. Stephen Trent, C. Michael Reynolds, Alexandre M. J. J. Bonvin

, Jan P. Tommassen, Maarten R. Egmond, M. Stephen Trent, Piet Gros

Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium

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Sjoerd J. L. van Wijk, Sjoerd J. de Vries, Patrick Kemmeren, Anding Huang, Rolf Boelens, Alexandre M. J. J. Bonvin

, H. Th Marc Timmers

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system

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2008 Christopher J. Arnusch, Alexandre M. J. J. Bonvin

, Anne Marie Verel, Wouter T. M. Jansen, Rob M. J. Liskamp, Ben de Kruijff, Roland J. Pieters, Eefjan Breukink

The Vancomycin−Nisin(1−12) Hybrid Restores Activity against Vancomycin Resistant Enterococci †

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Sascha Jung, Aj J. Dingley, René Augustin, Friederike Anton-Erxleben, Mareike Stanisak, Christoph Gelhaus, Thomas Gutsmann, Mu U. Hammer, Rainer Podschun, Am M. J. J. Bonvin

, Matthias Leippe, Tc C. G. Bosch, Joachim Grotzinger

Hydramacin-1, Structure and Antibacterial Activity of a Protein from the Basal Metazoan Hydra

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Rogier W. Sanders, Shang-Te D. Hsu

, Eelco van Anken, I. Marije Liscaljet, Martijn Dankers, Ilja Bontjer, Aafke Land, Ineke Braakman, Alexandre M. J. J. Bonvin

, Ben Berkhout

Evolution Rescues Folding of Human Immunodeficiency Virus-1 Envelope Glycoprotein GP120 Lacking a Conserved Disulfide Bond

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Sjoerd J. de Vries, Alexandre M. J. J. Bonvin

How Proteins Get in Touch: Interface Prediction in the Study of Biomolecular Complexes

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Marc van Dijk, Alexandre M. J. J. Bonvin

A protein-DNA docking benchmark

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Fernando Corrêa, Roberto Kopke Salinas, Alexandre M. J. J. Bonvin

, Chuck S. Farah

Deciphering the role of the electrostatic interactions in the α-tropomyosin head-to-tail complex

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Papers authored by Alexandre M. J. J. Bonvin