All papers authored by Pierre-Alain Binz
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2022
Flaminia Fanelli 
,
Stephen Bruce,
Marco Cantù,
Anastasia Temchenko,
Marco Mezzullo,
Johanna M. Lindner,
Mirko Peitzsch,
Pierre-Alain Binz ,
Mariette T. Ackermans,
Annemieke C. Heijboer,
Jody Van den Ouweland,
Daniel Koeppl,
Elena Nardi ,
Manfred Rauh,
Michael Vogeser
and 2 other authors
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,
Stephen Bruce,
Marco Cantù,
Anastasia Temchenko,
Marco Mezzullo,
Johanna M. Lindner,
Mirko Peitzsch,
Pierre-Alain Binz ,
Mariette T. Ackermans,
Annemieke C. Heijboer,
Jody Van den Ouweland,
Daniel Koeppl,
Elena Nardi ,
Manfred Rauh,
Michael Vogeser
and 2 other authors
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Flaminia Fanelli ,
Marco Cantù,
Anastasia Temchenko,
Marco Mezzullo ,
Johanna M. Lindner,
Mirko Peitzsch,
James M. Hawley,
Stephen Bruce,
Pierre-Alain Binz ,
Mariette T. Ackermans,
Annemieke C. Heijboer,
Jody Van den Ouweland,
Daniel Koeppl,
Elena Nardi ,
Finlay MacKenzie
and 5 other authors
Upload
,
Marco Cantù,
Anastasia Temchenko,
Marco Mezzullo ,
Johanna M. Lindner,
Mirko Peitzsch,
James M. Hawley,
Stephen Bruce,
Pierre-Alain Binz ,
Mariette T. Ackermans,
Annemieke C. Heijboer,
Jody Van den Ouweland,
Daniel Koeppl,
Elena Nardi ,
Finlay MacKenzie
and 5 other authors
Upload
2021
Lara Duran‐Trio ,
Gabriella Fernandes‐Pires,
Jocelyn Grosse ,
Ines Soro‐Arnaiz ,
Clothilde Roux‐Petronelli,
Pierre‐Alain Binz ,
Katrien De Bock ,
Cristina Cudalbu ,
Carmen Sandi ,
Olivier Braissant
Download from onlinelibrary.wiley.com
,
Gabriella Fernandes‐Pires,
Jocelyn Grosse ,
Ines Soro‐Arnaiz ,
Clothilde Roux‐Petronelli,
Pierre‐Alain Binz ,
Katrien De Bock ,
Cristina Cudalbu ,
Carmen Sandi ,
Olivier Braissant
Download from onlinelibrary.wiley.com
Eric W. Deutsch ,
Yasset Perez-Riverol ,
Jeremy Carver,
Shin Kawano ,
Luis Mendoza,
Tim Van Den Bossche ,
Ralf Gabriels ,
Pierre-Alain Binz ,
Benjamin Pullman ,
Zhi Sun,
Jim Shofstahl,
Wout Bittremieux ,
Tytus D. Mak,
Joshua Klein,
Yunping Zhu
and 3 other authors
,
Yasset Perez-Riverol ,
Jeremy Carver,
Shin Kawano ,
Luis Mendoza,
Tim Van Den Bossche ,
Ralf Gabriels ,
Pierre-Alain Binz ,
Benjamin Pullman ,
Zhi Sun,
Jim Shofstahl,
Wout Bittremieux ,
Tytus D. Mak,
Joshua Klein,
Yunping Zhu
and 3 other authors
Universal Spectrum Identifier for mass spectra
Download from www.nature.com
Lara Duran-Trio ,
Gabriella Fernandes-Pires,
Dunja Simicic,
Jocelyn Grosse ,
Clothilde Roux-Petronelli,
Stephen J. Bruce,
Pierre-Alain Binz ,
Carmen Sandi ,
Cristina Cudalbu ,
Olivier Braissant
Download from www.nature.com
,
Gabriella Fernandes-Pires,
Dunja Simicic,
Jocelyn Grosse ,
Clothilde Roux-Petronelli,
Stephen J. Bruce,
Pierre-Alain Binz ,
Carmen Sandi ,
Cristina Cudalbu ,
Olivier Braissant
Download from www.nature.com
2019
Pierre-Alain Binz ,
Juan Antonio Vizcaíno,
Jim Shofstahl,
Harald Barsnes,
Robert J. Chalkley,
Gerben Menschaert,
Emanuele Alpi,
Karl Clauser,
Jimmy K. Eng,
Lydie Lane,
Sean L. Seymour,
Luis Francisco Hernández Sánchez,
Gerhard Mayer,
Martin Eisenacher,
Yasset Perez-Riverol
and 6 other authors
,
Juan Antonio Vizcaíno,
Jim Shofstahl,
Harald Barsnes,
Robert J. Chalkley,
Gerben Menschaert,
Emanuele Alpi,
Karl Clauser,
Jimmy K. Eng,
Lydie Lane,
Sean L. Seymour,
Luis Francisco Hernández Sánchez,
Gerhard Mayer,
Martin Eisenacher,
Yasset Perez-Riverol
and 6 other authors
Proteomics Standards Initiative Extended FASTA Format (PEFF)
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2014
Sean L. Seymour,
Terry Farrah,
Pierre‐Alain A. Binz ,
Robert J. Chalkley,
John S. Cottrell,
Brian C. Searle,
David L. Tabb,
Gorka Prieto,
Juan Antonio Vizcaíno ,
Julian Uszkoreit ,
Martin Eisenacher,
Salvador Martínez‐Bartolomé,
Fawaz Ghali,
Andrew R. Jones
,
Robert J. Chalkley,
John S. Cottrell,
Brian C. Searle,
David L. Tabb,
Gorka Prieto,
Juan Antonio Vizcaíno ,
Julian Uszkoreit ,
Martin Eisenacher,
Salvador Martínez‐Bartolomé,
Fawaz Ghali,
Andrew R. Jones
A standardized framing for reporting protein identifications in mzIdentML 1.2
Download from onlinelibrary.wiley.com
Juan A. Vizcaíno ,
Eric W. Deutsch ,
Rui Wang,
Attila Csordas,
Florian Reisinger,
Daniel Rios,
Zhi Sun,
Juan Pablo Albar,
José A. Dianes,
Terry Farrah,
Nuno Bandeira,
Pierre-Alain Binz ,
Ioannis Xenarios ,
Martin Eisenacher,
Gerhard Mayer
and 11 other authors
,
Eric W. Deutsch ,
Rui Wang,
Attila Csordas,
Florian Reisinger,
Daniel Rios,
Zhi Sun,
Juan Pablo Albar,
José A. Dianes,
Terry Farrah,
Nuno Bandeira,
Pierre-Alain Binz ,
Ioannis Xenarios ,
Martin Eisenacher,
Gerhard Mayer
and 11 other authors
ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Download from www.nature.com
Gerhard Mayer,
Andrew R. Jones,
Pierre-Alain Binz ,
Eric W. Deutsch ,
Sandra Orchard,
Luisa Montecchi-Palazzi,
Juan Antonio Vizcaíno ,
Henning Hermjakob,
David Oveillero,
Randall Julian,
Christian Stephan,
Helmut E. Meyer,
Martin Eisenacher
,
Eric W. Deutsch ,
Sandra Orchard,
Luisa Montecchi-Palazzi,
Juan Antonio Vizcaíno ,
Henning Hermjakob,
David Oveillero,
Randall Julian,
Christian Stephan,
Helmut E. Meyer,
Martin Eisenacher
Controlled vocabularies and ontologies in proteomics: Overview, principles and practice☆
Download from www.ncbi.nlm.nih.gov
2013
Salvador Martinez-Bartolome,
Eric W. Deutsch ,
Pierre-Alain Binz ,
Martin Eisenacher,
Gerhard Mayer,
Alex Campos,
Francesc Canals,
Joan-Josep Bech-Serra,
Montserrat Carrascal,
Marina Gay,
Alberto Paradela ,
Rosana Navajas,
Andy R. Jones,
Miguel Marcilla,
Maria Luisa Hernaez
and 7 other authors
,
Pierre-Alain Binz ,
Martin Eisenacher,
Gerhard Mayer,
Alex Campos,
Francesc Canals,
Joan-Josep Bech-Serra,
Montserrat Carrascal,
Marina Gay,
Alberto Paradela ,
Rosana Navajas,
Andy R. Jones,
Miguel Marcilla,
Maria Luisa Hernaez
and 7 other authors
Guidelines for reporting quantitative mass spectrometry based experiments in proteomics.
Download from www.researchgate.net
Sandra Orchard,
Pierre-Alain Binz ,
Andrew R. Jones,
Juan Antonio Vizcaino,
Eric W. Deutsch,
Henning Hermjakob
,
Andrew R. Jones,
Juan Antonio Vizcaino,
Eric W. Deutsch,
Henning Hermjakob
Preparing to Work with Big Data in Proteomics - A Report on the HUPO-PSI Spring Workshop
Download from api.wiley.com
2012
Sandra Orchard,
Pierre-Alain Binz ,
Christoph Borchers,
Michael K. Gilson,
Andrew R. Jones,
George Nicola,
Juan Antonio Vizcaino,
Eric W. Deutsch,
Henning Hermjakob
,
Christoph Borchers,
Michael K. Gilson,
Andrew R. Jones,
George Nicola,
Juan Antonio Vizcaino,
Eric W. Deutsch,
Henning Hermjakob
Ten Years of Standardizing Proteomic Data: A Report on the HUPO-PSI Spring Workshop
Download from www.ncbi.nlm.nih.gov
Young-Ki Paik,
Gilbert S. Omenn,
Mathias Uhlen,
Samir Hanash,
György Marko-Varga,
Ruedi Aebersold,
Amos Bairoch,
Tadashi Yamamoto,
Pierre Legrain,
Hyoung-Joo Lee,
Keun Na,
Seul-Ki Jeong,
Fuchu He,
Pierre-Alain Binz ,
Toshihide Nishimura
and 8 other authors
,
Toshihide Nishimura
and 8 other authors
Standard Guidelines for the Chromosome-Centric Human Proteome Project
Download from www.researchgate.net
Andrew R. Jones,
Martin Eisenacher,
Gerhard Mayer,
Oliver Kohlbacher ,
Jennifer Siepen,
Simon J. Hubbard,
Julian N. Selley,
Brian C. Searle,
James Shofstahl,
Sean L. Seymour,
Randall Julian,
Pierre-Alain Binz ,
Eric W. Deutsch ,
Henning Hermjakob,
Florian Reisinger
and 5 other authors
,
Jennifer Siepen,
Simon J. Hubbard,
Julian N. Selley,
Brian C. Searle,
James Shofstahl,
Sean L. Seymour,
Randall Julian,
Pierre-Alain Binz ,
Eric W. Deutsch ,
Henning Hermjakob,
Florian Reisinger
and 5 other authors
The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
Download from doi.org
Sandra Orchard,
Juan-Pablo Albar,
Eric W. Deutsch ,
Martin Eisenacher,
Pierre-Alain Binz ,
Salvador Martinez-Bartolomé,
Juan Antonio Vizcaíno ,
Henning Hermjakob
Download from digital.csic.es
,
Martin Eisenacher,
Pierre-Alain Binz ,
Salvador Martinez-Bartolomé,
Juan Antonio Vizcaíno ,
Henning Hermjakob
Download from digital.csic.es
2011
Eric W. Deutsch ,
Matthew Chambers,
Steffen Neumann,
Fredrik Levander,
Pierre-Alain Binz ,
Jim Shofstahl,
David S. Campbell,
Luis Mendoza,
David Ovelleiro,
Kenny Helsens,
Lennart Martens ,
Ruedi Aebersold,
Robert L. Moritz,
Mi-Youn Brusniak
,
Matthew Chambers,
Steffen Neumann,
Fredrik Levander,
Pierre-Alain Binz ,
Jim Shofstahl,
David S. Campbell,
Luis Mendoza,
David Ovelleiro,
Kenny Helsens,
Lennart Martens ,
Ruedi Aebersold,
Robert L. Moritz,
Mi-Youn Brusniak
TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists*
Download from doi.org
2010
Lennart Martens ,
Matthew Chambers,
Marc Sturm ,
Darren Kessner,
Fredrik Levander,
Jim Shofstahl,
Wilfred H. Tang,
Andreas Ropp,
Andreas Rompp,
Andreas Römpp,
Steffen Neumann,
Angel D. Pizarro,
Luisa Montecchi-Palazzi,
Natalie Tasman,
Mike Coleman
and 5 other authors
,
Matthew Chambers,
Marc Sturm ,
Darren Kessner,
Fredrik Levander,
Jim Shofstahl,
Wilfred H. Tang,
Andreas Ropp,
Andreas Rompp,
Andreas Römpp,
Steffen Neumann,
Angel D. Pizarro,
Luisa Montecchi-Palazzi,
Natalie Tasman,
Mike Coleman
and 5 other authors
mzML—a Community Standard for Mass Spectrometry Data*
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