All papers authored by Björn Grüning
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2024
Nadim Rahman 
,
Colman O'Cathail ,
Ahmad Zyoud ,
Alexey Sokolov ,
Bas Oude Munnink ,
Björn Grüning ,
Carla Cummins ,
Clara Amid ,
David F. Nieuwenhuijse ,
Dávid Visontai,
David Yu Yuan ,
Dipayan Gupta ,
Divyae K. Prasad ,
Gábor Máté Gulyás,
Gabriele Rinck
and 32 other authors
,
Colman O'Cathail ,
Ahmad Zyoud ,
Alexey Sokolov ,
Bas Oude Munnink ,
Björn Grüning ,
Carla Cummins ,
Clara Amid ,
David F. Nieuwenhuijse ,
Dávid Visontai,
David Yu Yuan ,
Dipayan Gupta ,
Divyae K. Prasad ,
Gábor Máté Gulyás,
Gabriele Rinck
and 32 other authors
Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses
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Delphine Larivière ,
Linelle Abueg,
Nadolina Brajuka,
Cristóbal Gallardo-Alba,
Bjorn Grüning ,
Byung June Ko,
Alex Ostrovsky,
Marc Palmada-Flores ,
Brandon D. Pickett ,
Keon Rabbani ,
Agostinho Antunes ,
Jennifer R. Balacco,
Mark J. P. Chaisson ,
Haoyu Cheng,
Joanna Collins
and 26 other authors
,
Linelle Abueg,
Nadolina Brajuka,
Cristóbal Gallardo-Alba,
Bjorn Grüning ,
Byung June Ko,
Alex Ostrovsky,
Marc Palmada-Flores ,
Brandon D. Pickett ,
Keon Rabbani ,
Agostinho Antunes ,
Jennifer R. Balacco,
Mark J. P. Chaisson ,
Haoyu Cheng,
Joanna Collins
and 26 other authors
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
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2023
Romain David ,
Arina Rybina ,
Jean‐Marie Burel ,
Jean‐Karim Heriche ,
Pauline Audergon ,
Jan‐Willem Boiten ,
Frederik Coppens ,
Sara Crockett ,
Katrina Exter ,
Sven Fahrner ,
Maddalena Fratelli ,
Carole Goble ,
Philipp Gormanns ,
Tobias Grantner ,
Björn Grüning
and 44 other authors
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,
Arina Rybina ,
Jean‐Marie Burel ,
Jean‐Karim Heriche ,
Pauline Audergon ,
Jan‐Willem Boiten ,
Frederik Coppens ,
Sara Crockett ,
Katrina Exter ,
Sven Fahrner ,
Maddalena Fratelli ,
Carole Goble ,
Philipp Gormanns ,
Tobias Grantner ,
Björn Grüning
and 44 other authors
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Heinrich Lukas Weil ,
Kevin Schneider ,
Marcel Tschöpe ,
Jonathan Bauer ,
Oliver Maus ,
Kevin Frey ,
Dominik Brilhaus ,
Cristina Martins Rodrigues ,
Gajendra Doniparthi ,
Florian Wetzels ,
Jonas Lukasczyk ,
Angela Kranz ,
Björn Grüning ,
David Zimmer ,
Stefan Deßloch
and 4 other authors
,
Kevin Schneider ,
Marcel Tschöpe ,
Jonathan Bauer ,
Oliver Maus ,
Kevin Frey ,
Dominik Brilhaus ,
Cristina Martins Rodrigues ,
Gajendra Doniparthi ,
Florian Wetzels ,
Jonas Lukasczyk ,
Angela Kranz ,
Björn Grüning ,
David Zimmer ,
Stefan Deßloch
and 4 other authors
PLANTdataHUB: a collaborative platform for continuous FAIR data sharing in plant research
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Carole Goble ,
Finn Bacall,
Stian Soiland-Reyes,
Stuart Owen,
Ignacio Eguinoa,
Bert Droesbeke,
Hervé Ménager,
Laura Rodriguez-Navas,
José M. Fernández ,
Björn Grüning ,
Simone Leo,
Luca Pireddu ,
Michael Crusoe ,
Johan Gustafsson,
Salvador Capella-Gutierrez
and 1 other authors
,
Finn Bacall,
Stian Soiland-Reyes,
Stuart Owen,
Ignacio Eguinoa,
Bert Droesbeke,
Hervé Ménager,
Laura Rodriguez-Navas,
José M. Fernández ,
Björn Grüning ,
Simone Leo,
Luca Pireddu ,
Michael Crusoe ,
Johan Gustafsson,
Salvador Capella-Gutierrez
and 1 other authors
EOSC-Life Workflow Collaboratory for the Life Sciences
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2022
Helena Rasche ,
Cameron Hyde ,
John Davis ,
Simon Gladman ,
Nate Coraor ,
Anthony Bretaudeau ,
Gianmauro Cuccuru ,
Wendi Bacon ,
Beatriz Serrano-Solano ,
Jennifer Hillman-Jackson ,
Saskia Hiltemann ,
Miaomiao Zhou ,
Björn Grüning ,
Andrew Stubbs
,
Cameron Hyde ,
John Davis ,
Simon Gladman ,
Nate Coraor ,
Anthony Bretaudeau ,
Gianmauro Cuccuru ,
Wendi Bacon ,
Beatriz Serrano-Solano ,
Jennifer Hillman-Jackson ,
Saskia Hiltemann ,
Miaomiao Zhou ,
Björn Grüning ,
Andrew Stubbs
Training Infrastructure as a Service
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Paulo Czarnewski ,
Ahmed Mahfouz ,
Raffaele A. Calogero ,
Patricia M. Palagi ,
Laura Portell-Silva,
Asier Gonzalez-Uriarte,
Charlotte Soneson ,
Tony Burdett,
Barbara Szomolay,
Pavankumar Videm,
Hans-Rudolf Hotz ,
Irene Papatheodorou ,
John M. Hancock,
Björn Grüning ,
Wilfried Haerty
and 12 other authors
,
Ahmed Mahfouz ,
Raffaele A. Calogero ,
Patricia M. Palagi ,
Laura Portell-Silva,
Asier Gonzalez-Uriarte,
Charlotte Soneson ,
Tony Burdett,
Barbara Szomolay,
Pavankumar Videm,
Hans-Rudolf Hotz ,
Irene Papatheodorou ,
John M. Hancock,
Björn Grüning ,
Wilfried Haerty
and 12 other authors
Community-driven ELIXIR activities in single-cell omics
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Stian Soiland-Reyes ,
Peter Sefton ,
Mercè Crosas ,
Leyla Jael Castro ,
Frederik Coppens ,
José M. Fernández ,
Daniel Garijo ,
Björn Grüning ,
Marco La Rosa ,
Simone Leo ,
Eoghan Ó. Carragáin ,
Marc Portier ,
Ana Trisovic ,
Ro-Crate Community,
Paul Groth
and 1 other authors
,
Peter Sefton ,
Mercè Crosas ,
Leyla Jael Castro ,
Frederik Coppens ,
José M. Fernández ,
Daniel Garijo ,
Björn Grüning ,
Marco La Rosa ,
Simone Leo ,
Eoghan Ó. Carragáin ,
Marc Portier ,
Ana Trisovic ,
Ro-Crate Community,
Paul Groth
and 1 other authors
Packaging research artefacts with RO-Crate
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Matthias Fahrner ,
Melanie Christine Föll ,
Björn Andreas Grüning ,
Matthias Bernt ,
Hannes Röst ,
Oliver Schilling
Download from academic.oup.com
,
Melanie Christine Föll ,
Björn Andreas Grüning ,
Matthias Bernt ,
Hannes Röst ,
Oliver Schilling
Download from academic.oup.com
2021
Chengxin Dai,
Anja Füllgrabe ,
Julianus Pfeuffer,
Elizaveta M. Solovyeva ,
Jingwen Deng,
Pablo Moreno ,
Selvakumar Kamatchinathan,
Deepti Jaiswal Kundu,
Nancy George ,
Silvie Fexova,
Björn Grüning ,
Melanie Christine Föll,
Johannes Griss ,
Marc Vaudel ,
Enrique Audain
and 25 other authors
,
Julianus Pfeuffer,
Elizaveta M. Solovyeva ,
Jingwen Deng,
Pablo Moreno ,
Selvakumar Kamatchinathan,
Deepti Jaiswal Kundu,
Nancy George ,
Silvie Fexova,
Björn Grüning ,
Melanie Christine Föll,
Johannes Griss ,
Marc Vaudel ,
Enrique Audain
and 25 other authors
A proteomics sample metadata representation for multiomics integration and big data analysis
Download from doi.org
Qiang Gu,
Anup Kumar ,
Simon Bray ,
Allison Creason ,
Alireza Khanteymoori ,
Vahid Jalili ,
Björn Grüning ,
Jeremy Goecks
,
Simon Bray ,
Allison Creason ,
Alireza Khanteymoori ,
Vahid Jalili ,
Björn Grüning ,
Jeremy Goecks
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
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Pablo Moreno ,
Ni Huang,
Jonathan R. Manning ,
Suhaib Mohammed,
Andrey Solovyev,
Krzysztof Polanski ,
Wendi Bacon,
Ruben Chazarra,
Carlos Talavera-López ,
Maria A. Doyle,
Guilhem Marnier,
Björn Grüning ,
Helena Rasche ,
Nancy George ,
Silvie Korena Fexova
and 8 other authors
,
Ni Huang,
Jonathan R. Manning ,
Suhaib Mohammed,
Andrey Solovyev,
Krzysztof Polanski ,
Wendi Bacon,
Ruben Chazarra,
Carlos Talavera-López ,
Maria A. Doyle,
Guilhem Marnier,
Björn Grüning ,
Helena Rasche ,
Nancy George ,
Silvie Korena Fexova
and 8 other authors
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis
Download from www.nature.com
Peter S. Thuy-Boun,
Subina Mehta ,
Bjoern Gruening ,
Thomas McGowan,
An Nguyen,
Andrew T. Rajczewski,
James E. Johnson,
Timothy J. Griffin ,
Dennis W. Wolan ,
Pratik D. Jagtap
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,
Bjoern Gruening ,
Thomas McGowan,
An Nguyen,
Andrew T. Rajczewski,
James E. Johnson,
Timothy J. Griffin ,
Dennis W. Wolan ,
Pratik D. Jagtap
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2020
Ray Sajulga ,
Frederique Lisacek,
Caleb Easterly ,
Michael Riffle ,
Bart Mesuere ,
Thilo Muth ,
Subina Mehta ,
Praveen Kumar ,
James Johnson ,
Bjoern Andreas Gruening ,
Henning Schiebenhoefer ,
Carolin A. Kolmeder,
Stephan Fuchs ,
Brook L. Nunn ,
Joel Rudney
and 2 other authors
,
Frederique Lisacek,
Caleb Easterly ,
Michael Riffle ,
Bart Mesuere ,
Thilo Muth ,
Subina Mehta ,
Praveen Kumar ,
James Johnson ,
Bjoern Andreas Gruening ,
Henning Schiebenhoefer ,
Carolin A. Kolmeder,
Stephan Fuchs ,
Brook L. Nunn ,
Joel Rudney
and 2 other authors
Survey of metaproteomics software tools for functional microbiome analysis
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Willem de Koning ,
Milad Miladi ,
Saskia Hiltemann ,
Astrid Heikema ,
John P. Hays ,
Stephan Flemming,
Marius van den Beek ,
Dana A. Mustafa ,
Rolf Backofen ,
Björn Grüning ,
Andrew P. Stubbs
,
Milad Miladi ,
Saskia Hiltemann ,
Astrid Heikema ,
John P. Hays ,
Stephan Flemming,
Marius van den Beek ,
Dana A. Mustafa ,
Rolf Backofen ,
Björn Grüning ,
Andrew P. Stubbs
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
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Mehmet Tekman ,
Bérénice Batut ,
Alexander Ostrovsky ,
Christophe Antoniewski ,
Dave Clements ,
Fidel Ramirez ,
Graham J. Etherington ,
Hans-Rudolf Hotz ,
Jelle Scholtalbers ,
Jonathan R. Manning ,
Lea Bellenger ,
Maria A. Doyle ,
Mohammad Heydarian ,
Ni Huang ,
Nicola Soranzo
and 8 other authors
,
Bérénice Batut ,
Alexander Ostrovsky ,
Christophe Antoniewski ,
Dave Clements ,
Fidel Ramirez ,
Graham J. Etherington ,
Hans-Rudolf Hotz ,
Jelle Scholtalbers ,
Jonathan R. Manning ,
Lea Bellenger ,
Maria A. Doyle ,
Mohammad Heydarian ,
Ni Huang ,
Nicola Soranzo
and 8 other authors
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework
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Dannon Baker ,
Marius van den Beek ,
Daniel Blankenberg ,
Dave Bouvier ,
John Chilton ,
Nate Coraor ,
Frederik Coppens ,
Ignacio Eguinoa ,
Simon Gladman ,
Björn Grüning ,
Nicholas Keener,
Delphine Larivière ,
Andrew Lonie ,
Sergei Kosakovsky Pond ,
Wolfgang Maier
and 3 other authors
Download from doi.org
,
Marius van den Beek ,
Daniel Blankenberg ,
Dave Bouvier ,
John Chilton ,
Nate Coraor ,
Frederik Coppens ,
Ignacio Eguinoa ,
Simon Gladman ,
Björn Grüning ,
Nicholas Keener,
Delphine Larivière ,
Andrew Lonie ,
Sergei Kosakovsky Pond ,
Wolfgang Maier
and 3 other authors
Download from doi.org
2019
Milad Miladi ,
Eteri Sokhoyan,
Torsten Houwaart ,
Steffen Heyne ,
Fabrizio Costa ,
Björn Grüning ,
Rolf Backofen
Download from doi.org
,
Eteri Sokhoyan,
Torsten Houwaart ,
Steffen Heyne ,
Fabrizio Costa ,
Björn Grüning ,
Rolf Backofen
Download from doi.org
Melanie Christine Föll ,
Lennart Moritz,
Thomas Wollmann ,
Maren Nicole Stillger,
Niklas Vockert,
Martin Werner,
Peter Bronsert,
Karl Rohr,
Björn Andreas Grüning ,
Oliver Schilling
,
Lennart Moritz,
Thomas Wollmann ,
Maren Nicole Stillger,
Niklas Vockert,
Martin Werner,
Peter Bronsert,
Karl Rohr,
Björn Andreas Grüning ,
Oliver Schilling
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
Download from doi.orgMissing publications? Search for publications with a matching author name.