22 papers found
A multicenter study benchmarks software tools for label-free proteome quantification
OpenMS: a flexible open-source software platform for mass spectrometry data analysis
Systems-level Proteomics of Two Ubiquitous Leaf Commensals Reveals Complementary Adaptive Traits for Phyllosphere Colonization
Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms
Reproducible quantitative proteotype data matrices for systems biology
Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry
Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis
Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry
Efficient visualization of high-throughput targeted proteomics experiments: TAPIR: Fig. 1.
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps
Statistical elimination of spectral features with large between-run variation enhances quantitative protein-level conclusions in experiments with data-independent spectral acquisition
DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.
A repository of assays to quantify 10,000 human proteins by SWATH-MS
aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data
Numerical Compression Schemes for Proteomics Mass Spectrometry Data*
pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
The Mtb Proteome Library: A Resource of Assays to Quantify the Complete Proteome of Mycobacterium tuberculosis
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis
Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics
A Computational Tool to Detect and Avoid Redundancy in Selected Reaction Monitoring
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