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All papers authored by Yongqun He

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2023 Michael A. Gargano

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, Nicolas Matentzoglu

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, Eunice B. Addo-Lartey, Anna V. Anagnostopoulos

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, Joel Anderton

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, Paul Avillach

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, Anita M. Bagley

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, Eduard Bakštein

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, James P. Balhoff

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, Gareth Baynam, Susan M. Bello

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, Holli Bertram

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and 161 other authors

The Human Phenotype Ontology in 2024: phenotypes around the world

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Menglin Wang

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, Benoit Rousseau

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, Kunyu Qiu, Guannan Huang, Yu Zhang, Hang Su, Christine Le Bihan-Benjamin, Ines Khati, Oliver Artz

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, Michael B. Foote

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, Yung-Yi Cheng

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, Kuo-Hsiung Lee, Michael Z. Miao, Yue Sun, Philippe-Jean Bousquet

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and 17 other authors

Killing tumor-associated bacteria with a liposomal antibiotic generates neoantigens that induce anti-tumor immune responses

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2021 Katy Börner

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, Sarah A. Teichmann

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, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland, Bruce W. Herr

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, Andreas Bueckle

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, Hrishikesh Paul, Muzlifah Haniffa

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, Laura Jardine, Amy Bernard

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, Song-Lin Ding, Jeremy A. Miller, Shin Lin and 21 other authors

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

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Randi Vita, Jie Zheng, Rebecca Jackson

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, Damion Dooley

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, James A. Overton, Mark A. Miller, Daniel C. Berrios

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, Richard H. Scheuermann

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, Yongqun He

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, Hande Küçük McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos

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, John Judkins and 6 other authors

Standardization of assay representation in the Ontology for Biomedical Investigations

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2020 Edison Ong, Haihe Wang, Mei U. Wong, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He

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Vaxign-ML: supervised machine learning reverse vaccinology model for improved prediction of bacterial protective antigens

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2019 Edison Ong, Peter Sun, Kimberly Berke, Jie Zheng, Guanming Wu, Yongqun He

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VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions

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Mert Tiftikci, Arzucan Özgür, Yongqun He

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, Junguk Hur

Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels

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Junguk Hur, Cui Tao, Yongqun He

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A 2018 workshop: vaccine and drug ontology studies (VDOS 2018)

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Robin Haw, Fred Loney, Edison Ong, Yongqun He

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, Guanming Wu

Perform Pathway Enrichment Analysis Using ReactomeFIViz

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Muhammad Amith, Frank Manion, Chen Liang, Marcelline Harris, Dennis Wang, Yongqun He

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, Cui Tao

Architecture and usability of OntoKeeper, an ontology evaluation tool

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Jian Ren

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, Tingni Sun, Yongqun He

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, Yuji Zhang

A statistical analysis of vaccine-adverse event data

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Hong Yu, Solomiya Nysak, Noemi Garg, Edison Ong, Xianwei Ye, Xiangyan Zhang, Yongqun He

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ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions

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Hongjie Pan, Xiaocui Bian, Sheng Yang, Yongqun He

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, Xiaolin Yang, Yuqin Liu

The cell line ontology-based representation, integration and analysis of cell lines used in China

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Yongqun He

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, William D. Duncan, Daniel J. Cooper, Jens Hansen, Ravi Iyengar, Edison Ong, Kendal Walker, Omar Tibi, Sam Smith, Lucas M. Serra, Jie Zheng, Sirarat Sarntivijai, Stephan Schürer, K. Sue O’Shea, Alexander D. Diehl

OSCI: standardized stem cell ontology representation and use cases for stem cell investigation

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Sirarat Sarntivijai, Yongqun He

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, Alexander D. Diehl

Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies

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Yang Yang, Michael Wybrow, Yuan-Fang Li, Tobias Czauderna

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, Yongqun He

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OntoPlot: A Novel Visualisation for Non-hierarchical Associations in Large Ontologies

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2018 Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal A. Olszewski, Luonan Chen and 1 other authors

Victors: a web-based knowledge base of virulence factors in human and animal pathogens

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Yang Wang, Zhensong Wen, Xiaolei Pan, David E. Briles, Yongqun He

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, Jing-Ren Zhang

Novel Immunoprotective Proteins ofStreptococcus pneumoniaeIdentified by Opsonophagocytosis Killing Screen

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Junguk Hur

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, Arzucan Özgür, Yongqun He

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Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs

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Jiangan Xie, Jessica Wang, Zhangyong Li, Wei Wang, Yu Pang, Yongqun He

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Ontology-Based Meta-Analysis of Animal and Human Adverse Events Associated With Licensed Brucellosis Vaccines

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