All papers authored by Nicolas Matentzoglu
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2024
J. Harry Caufield 
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Harshad Hegde ,
Vincent Emonet ,
Nomi L. Harris ,
Marcin P. Joachimiak ,
Nicolas Matentzoglu ,
HyeongSik Kim ,
Sierra Moxon ,
Justin T. Reese ,
Melissa A. Haendel ,
Peter N. Robinson ,
Christopher J. Mungall
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,
Harshad Hegde ,
Vincent Emonet ,
Nomi L. Harris ,
Marcin P. Joachimiak ,
Nicolas Matentzoglu ,
HyeongSik Kim ,
Sierra Moxon ,
Justin T. Reese ,
Melissa A. Haendel ,
Peter N. Robinson ,
Christopher J. Mungall
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2023
Leigh C. Carmody,
Michael A. Gargano,
Sabrina Toro,
Nicole A. Vasilevsky,
Margaret P. Adam,
Hannah Blau,
Lauren E. Chan,
David Gomez-Andres,
Rita Horvath,
Megan L. Kraus,
Markus S. Ladewig,
David Lewis-Smith,
Hanns Lochmüller,
Nicolas A. Matentzoglu ,
Monica C. Munoz-Torres
and 11 other authors
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,
Monica C. Munoz-Torres
and 11 other authors
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Tim E. Putman ,
Kevin Schaper ,
Nicolas Matentzoglu ,
Vincent P. Rubinetti ,
Faisal S. Alquaddoomi ,
Corey Cox ,
J. Harry Caufield ,
Glass Elsarboukh ,
Sarah Gehrke ,
Harshad Hegde ,
Justin T. Reese ,
Ian Braun ,
Richard M. Bruskiewich ,
Luca Cappelletti ,
Seth Carbon
and 29 other authors
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,
Kevin Schaper ,
Nicolas Matentzoglu ,
Vincent P. Rubinetti ,
Faisal S. Alquaddoomi ,
Corey Cox ,
J. Harry Caufield ,
Glass Elsarboukh ,
Sarah Gehrke ,
Harshad Hegde ,
Justin T. Reese ,
Ian Braun ,
Richard M. Bruskiewich ,
Luca Cappelletti ,
Seth Carbon
and 29 other authors
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Michael A. Gargano ,
Nicolas Matentzoglu ,
Ben Coleman ,
Eunice B. Addo-Lartey,
Anna V. Anagnostopoulos ,
Joel Anderton ,
Paul Avillach ,
Anita M. Bagley ,
Eduard Bakštein ,
James P. Balhoff ,
Gareth Baynam,
Susan M. Bello ,
Michael Berk ,
Holli Bertram ,
Somer Bishop
and 161 other authors
,
Nicolas Matentzoglu ,
Ben Coleman ,
Eunice B. Addo-Lartey,
Anna V. Anagnostopoulos ,
Joel Anderton ,
Paul Avillach ,
Anita M. Bagley ,
Eduard Bakštein ,
James P. Balhoff ,
Gareth Baynam,
Susan M. Bello ,
Michael Berk ,
Holli Bertram ,
Somer Bishop
and 161 other authors
The Human Phenotype Ontology in 2024: phenotypes around the world
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J. Harry Caufield ,
Tim Putman,
Kevin Schaper,
Deepak R. Unni,
Harshad Hegde,
Tiffany J. Callahan,
Luca Cappelletti ,
Sierra A. T. Moxon,
Vida Ravanmehr,
Seth Carbon,
Lauren E. Chan,
Katherina Cortes ,
Kent A. Shefchek,
Glass Elsarboukh,
Jim P. Balhoff
and 11 other authors
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Tim Putman,
Kevin Schaper,
Deepak R. Unni,
Harshad Hegde,
Tiffany J. Callahan,
Luca Cappelletti ,
Sierra A. T. Moxon,
Vida Ravanmehr,
Seth Carbon,
Lauren E. Chan,
Katherina Cortes ,
Kent A. Shefchek,
Glass Elsarboukh,
Jim P. Balhoff
and 11 other authors
KG-Hub - Building and Exchanging Biological Knowledge Graphs
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Tiffany J. Callahan ,
Adrianne L. Stefanski,
Jordan M. Wyrwa ,
Chenjie Zeng,
Anna Ostropolets,
Juan M. Banda,
William A. Baumgartner,
Richard D. Boyce,
Elena Casiraghi ,
Ben D. Coleman,
Janine H. Collins ,
Sara J. Deakyne Davies ,
James A. Feinstein,
Asiyah Y. Lin,
Blake Martin
and 17 other authors
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Adrianne L. Stefanski,
Jordan M. Wyrwa ,
Chenjie Zeng,
Anna Ostropolets,
Juan M. Banda,
William A. Baumgartner,
Richard D. Boyce,
Elena Casiraghi ,
Ben D. Coleman,
Janine H. Collins ,
Sara J. Deakyne Davies ,
James A. Feinstein,
Asiyah Y. Lin,
Blake Martin
and 17 other authors
Ontologizing health systems data at scale: making translational discovery a reality
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Jennifer C. Girón ,
Sergei Tarasov,
Luis Antonio González Montaña,
Nicolas Matentzoglu ,
Aaron D. Smith ,
Markus Koch ,
Brendon E. Boudinot ,
Patrice Bouchard,
Roger Burks,
Lars Vogt ,
Matthew Yoder,
David Osumi-Sutherland ,
Frank Friedrich,
Rolf G. Beutel ,
István Mikó
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Sergei Tarasov,
Luis Antonio González Montaña,
Nicolas Matentzoglu ,
Aaron D. Smith ,
Markus Koch ,
Brendon E. Boudinot ,
Patrice Bouchard,
Roger Burks,
Lars Vogt ,
Matthew Yoder,
David Osumi-Sutherland ,
Frank Friedrich,
Rolf G. Beutel ,
István Mikó
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Ray Stefancsik,
James P. Balhoff,
Meghan A. Balk,
Robyn L. Ball,
Susan M. Bello,
Anita R. Caron,
Elissa J. Chesler,
Vinicius de Souza,
Sarah Gehrke,
Melissa Haendel,
Laura W. Harris,
Nomi L. Harris,
Arwa Ibrahim,
Sebastian Koehler,
Nicolas Matentzoglu
and 11 other authors
and 11 other authors
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences
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Lauren E. Chan,
Anne E. Thessen,
William D. Duncan,
Nicolas Matentzoglu ,
Charles Schmitt,
Cynthia J. Grondin,
Nicole Vasilevsky,
Julie A. McMurry,
Peter N. Robinson,
Christopher J. Mungall,
Melissa A. Haendel
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Charles Schmitt,
Cynthia J. Grondin,
Nicole Vasilevsky,
Julie A. McMurry,
Peter N. Robinson,
Christopher J. Mungall,
Melissa A. Haendel
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Robert Court,
Marta Costa,
Clare Pilgrim,
Gillian Millburn,
Alex Holmes,
Alex McLachlan,
Aoife Larkin,
Nicolas Matentzoglu ,
Huseyin Kir,
Helen Parkinson,
Nicolas H. Brown,
Cahir J. O’Kane,
J. Douglas Armstrong,
Gregory S. X. E. Jefferis,
David Osumi-Sutherland
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Huseyin Kir,
Helen Parkinson,
Nicolas H. Brown,
Cahir J. O’Kane,
J. Douglas Armstrong,
Gregory S. X. E. Jefferis,
David Osumi-Sutherland
Virtual Fly Brain—An interactive atlas of the Drosophila nervous system
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Shawn Zheng Kai Tan ,
Huseyin Kir,
Brian D. Aevermann,
Tom Gillespie,
Nomi Harris ,
Michael J. Hawrylycz,
Nikolas L. Jorstad,
Ed S. Lein ,
Nicolas Matentzoglu ,
Jeremy A. Miller,
Tyler S. Mollenkopf,
Christopher J. Mungall,
Patrick L. Ray,
Raymond E. A. Sanchez,
Brian Staats
and 5 other authors
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Huseyin Kir,
Brian D. Aevermann,
Tom Gillespie,
Nomi Harris ,
Michael J. Hawrylycz,
Nikolas L. Jorstad,
Ed S. Lein ,
Nicolas Matentzoglu ,
Jeremy A. Miller,
Tyler S. Mollenkopf,
Christopher J. Mungall,
Patrick L. Ray,
Raymond E. A. Sanchez,
Brian Staats
and 5 other authors
Brain Data Standards - A method for building data-driven cell-type ontologies
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Tiffany J. Callahan ,
Ignacio J. Tripodi,
Adrianne L. Stefanski,
Luca Cappelletti ,
Sanya B. Taneja ,
Jordan M. Wyrwa,
Elena Casiraghi ,
Nicolas A. Matentzoglu ,
Justin Reese,
Jonathan C. Silverstein ,
Charles Tapley Hoyt ,
Richard D. Boyce,
Scott A. Malec,
Deepak R. Unni ,
Marcin P. Joachimiak
and 17 other authors
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Ignacio J. Tripodi,
Adrianne L. Stefanski,
Luca Cappelletti ,
Sanya B. Taneja ,
Jordan M. Wyrwa,
Elena Casiraghi ,
Nicolas A. Matentzoglu ,
Justin Reese,
Jonathan C. Silverstein ,
Charles Tapley Hoyt ,
Richard D. Boyce,
Scott A. Malec,
Deepak R. Unni ,
Marcin P. Joachimiak
and 17 other authors
An Open-Source Knowledge Graph Ecosystem for the Life Sciences
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2022
Déborah Caucheteur ,
Zoë May Pendlington,
Paola Roncaglia,
Julien Gobeill ,
Luc Mottin ,
Nicolas Matentzoglu ,
Donat Agosti,
David Osumi-Sutherland ,
Helen Parkinson,
Patrick Ruch
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Zoë May Pendlington,
Paola Roncaglia,
Julien Gobeill ,
Luc Mottin ,
Nicolas Matentzoglu ,
Donat Agosti,
David Osumi-Sutherland ,
Helen Parkinson,
Patrick Ruch
COVoc and COVTriage: novel resources to support literature triage
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Charles Tapley Hoyt,
Meghan A. Balk ,
Donald Winston,
Tiffany J. Callahan,
Hoyt Ct,
Daniel Domingo-Fernández,
Melissa Anne Haendel,
Callahan Tj,
Harshad B. Hegde ,
Daniel S. Himmelstein ,
Klas,
Haendel Ma,
John Kunze,
Tiago Lubiana,
Klas Karis
and 11 other authors
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Donald Winston,
Tiffany J. Callahan,
Hoyt Ct,
Daniel Domingo-Fernández,
Melissa Anne Haendel,
Callahan Tj,
Harshad B. Hegde ,
Daniel S. Himmelstein ,
Klas,
Haendel Ma,
John Kunze,
Tiago Lubiana,
Klas Karis
and 11 other authors
Unifying the Identification of Biomedical Entities with the Bioregistry
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Malcolm E. Fisher,
Erik Segerdell,
Nicolas Matentzoglu ,
Mardi J. Nenni,
Joshua D. Fortriede,
Stanley Chu,
Troy J. Pells,
David Osumi-Sutherland,
Praneet Chaturvedi,
Christina James-Zorn,
Nivitha Sundararaj,
Vaneet S. Lotay,
Virgilio Ponferrada,
Dong Zhuo Wang,
Eugene Kim
and 5 other authors
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Mardi J. Nenni,
Joshua D. Fortriede,
Stanley Chu,
Troy J. Pells,
David Osumi-Sutherland,
Praneet Chaturvedi,
Christina James-Zorn,
Nivitha Sundararaj,
Vaneet S. Lotay,
Virgilio Ponferrada,
Dong Zhuo Wang,
Eugene Kim
and 5 other authors
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Nicolas Matentzoglu ,
James P. Balhoff ,
Susan M. Bello ,
Chris Bizon ,
Matthew Brush,
Tiffany J. Callahan,
Christopher G. Chute ,
William D. Duncan ,
Chris T. Evelo ,
Davera Gabriel,
John Graybeal ,
Alasdair Gray,
Benjamin M. Gyori ,
Melissa Haendel ,
Henriette Harmse
and 29 other authors
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James P. Balhoff ,
Susan M. Bello ,
Chris Bizon ,
Matthew Brush,
Tiffany J. Callahan,
Christopher G. Chute ,
William D. Duncan ,
Chris T. Evelo ,
Davera Gabriel,
John Graybeal ,
Alasdair Gray,
Benjamin M. Gyori ,
Melissa Haendel ,
Henriette Harmse
and 29 other authors
A Simple Standard for Sharing Ontological Mappings (SSSOM)
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Nicolas Matentzoglu ,
Damien Goutte-Gattat ,
Shawn Zheng Kai Tan ,
James P. Balhoff ,
Seth Carbon,
Anita R. Caron,
William D. Duncan ,
Joe E. Flack,
Melissa Haendel ,
Nomi L. Harris ,
William R. Hogan ,
Charles Tapley Hoyt ,
Rebecca C. Jackson ,
HyeongSik Kim,
Huseyin Kir
and 12 other authors
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Damien Goutte-Gattat ,
Shawn Zheng Kai Tan ,
James P. Balhoff ,
Seth Carbon,
Anita R. Caron,
William D. Duncan ,
Joe E. Flack,
Melissa Haendel ,
Nomi L. Harris ,
William R. Hogan ,
Charles Tapley Hoyt ,
Rebecca C. Jackson ,
HyeongSik Kim,
Huseyin Kir
and 12 other authors
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2021
Rebecca Jackson ,
Nicolas Matentzoglu ,
James A. Overton ,
Randi Vita ,
James P. Balhoff ,
Pier Luigi Buttigieg ,
Seth Carbon ,
Melanie Courtot ,
Alexander D. Diehl ,
Damion M. Dooley ,
William D. Duncan ,
Nomi L. Harris ,
Melissa A. Haendel ,
Suzanna E. Lewis ,
Darren A. Natale
and 10 other authors
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Nicolas Matentzoglu ,
James A. Overton ,
Randi Vita ,
James P. Balhoff ,
Pier Luigi Buttigieg ,
Seth Carbon ,
Melanie Courtot ,
Alexander D. Diehl ,
Damion M. Dooley ,
William D. Duncan ,
Nomi L. Harris ,
Melissa A. Haendel ,
Suzanna E. Lewis ,
Darren A. Natale
and 10 other authors
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies
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Stephanie H. Nowotarski ,
Erin L. Davies ,
Sofia M. C. Robb ,
Eric J. Ross ,
Nicolas Matentzoglu ,
Viraj Doddihal ,
Mol Mir,
Melainia McClain ,
Alejandro Sánchez Alvarado
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Erin L. Davies ,
Sofia M. C. Robb ,
Eric J. Ross ,
Nicolas Matentzoglu ,
Viraj Doddihal ,
Mol Mir,
Melainia McClain ,
Alejandro Sánchez Alvarado
Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms
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2020
Ghader Kurdi,
Jared Leo,
Nicolas Matentzoglu ,
Bijan Parsia,
Uli Sattler,
Sophie Forge,
Gina Donato,
Will Dowling
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Bijan Parsia,
Uli Sattler,
Sophie Forge,
Gina Donato,
Will Dowling
A comparative study of methods for a priori prediction of MCQ difficulty
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