All papers authored by Fabian Theis
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2024
Christina Koupourtidou 
,
Veronika Schwarz,
Hananeh Aliee,
Simon Frerich ,
Judith Fischer-Sternjak ,
Riccardo Bocchi ,
Tatiana Simon-Ebert,
Xianshu Bai ,
Swetlana Sirko ,
Frank Kirchhoff ,
Martin Dichgans ,
Magdalena Götz ,
Fabian J. Theis ,
Jovica Ninkovic
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,
Veronika Schwarz,
Hananeh Aliee,
Simon Frerich ,
Judith Fischer-Sternjak ,
Riccardo Bocchi ,
Tatiana Simon-Ebert,
Xianshu Bai ,
Swetlana Sirko ,
Frank Kirchhoff ,
Martin Dichgans ,
Magdalena Götz ,
Fabian J. Theis ,
Jovica Ninkovic
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Luca Marconato,
Giovanni Palla ,
Kevin A. Yamauchi ,
Isaac Virshup,
Elyas Heidari,
Tim Treis ,
Wouter-Michiel Vierdag ,
Sonja Stockhaus ,
Marcella Toth,
Benjamin Rombaut ,
Rahul B. Shrestha,
Lotte Pollaris ,
Laurens Lehner,
Harald Vöhringer,
Ilia Kats
and 7 other authors
,
Kevin A. Yamauchi ,
Isaac Virshup,
Elyas Heidari,
Tim Treis ,
Wouter-Michiel Vierdag ,
Sonja Stockhaus ,
Marcella Toth,
Benjamin Rombaut ,
Rahul B. Shrestha,
Lotte Pollaris ,
Laurens Lehner,
Harald Vöhringer,
Ilia Kats
and 7 other authors
SpatialData: an open and universal data framework for spatial omics
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2023
Niklas J. Lang ,
Lang Nj,
Janine Gote-Schniering ,
Laurens J. De Sadeleer ,
Diana Porras-Gonzalez ,
R. Christoph Jentzsch ,
Vladimir A. Shitov ,
Lin Yang ,
Christoph H. Mayr ,
Baharak Hooshiar Kashani ,
Yuexin Chen ,
De Sadeleer Lj,
Lukas Heumos ,
Shuhong Zhou,
Jeanine C. Pestoni
and 23 other authors
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,
Lang Nj,
Janine Gote-Schniering ,
Laurens J. De Sadeleer ,
Diana Porras-Gonzalez ,
R. Christoph Jentzsch ,
Vladimir A. Shitov ,
Lin Yang ,
Christoph H. Mayr ,
Baharak Hooshiar Kashani ,
Yuexin Chen ,
De Sadeleer Lj,
Lukas Heumos ,
Shuhong Zhou,
Jeanine C. Pestoni
and 23 other authors
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Aron Kos ,
Juan Pablo Lopez ,
Joeri Bordes ,
Carlo de Donno ,
Julien Dine ,
Elena Brivio ,
Stoyo Karamihalev ,
Malte D. Luecken ,
Suellen Almeida-Correa ,
Serena Gasperoni ,
Alec Dick,
Lucas Miranda ,
Maren Büttner ,
Rainer Stoffel,
Cornelia Flachskamm
and 3 other authors
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,
Juan Pablo Lopez ,
Joeri Bordes ,
Carlo de Donno ,
Julien Dine ,
Elena Brivio ,
Stoyo Karamihalev ,
Malte D. Luecken ,
Suellen Almeida-Correa ,
Serena Gasperoni ,
Alec Dick,
Lucas Miranda ,
Maren Büttner ,
Rainer Stoffel,
Cornelia Flachskamm
and 3 other authors
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Sebastian Schmidt ,
Constantin Stautner,
Duc Tung Vu ,
Alexander Heinz,
Martin Regensburger ,
Ozge Karayel ,
Dietrich Trümbach ,
Anna Artati,
Sabine Kaltenhäuser,
Mohamed Zakaria Nassef,
Sina Hembach,
Letyfee Steinert,
Beate Winner,
Winkler Jürgen ,
Martin Jastroch
and 9 other authors
,
Constantin Stautner,
Duc Tung Vu ,
Alexander Heinz,
Martin Regensburger ,
Ozge Karayel ,
Dietrich Trümbach ,
Anna Artati,
Sabine Kaltenhäuser,
Mohamed Zakaria Nassef,
Sina Hembach,
Letyfee Steinert,
Beate Winner,
Winkler Jürgen ,
Martin Jastroch
and 9 other authors
A reversible state of hypometabolism in a human cellular model of sporadic Parkinson’s disease
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Marvin Thielert ,
Ericka Cm Itang ,
Constantin Ammar ,
Florian A. Rosenberger ,
Isabell Bludau ,
Lisa Schweizer ,
Thierry M. Nordmann ,
Patricia Skowronek ,
Maria Wahle ,
Wen‐Feng Zeng ,
Xie‐Xuan Zhou,
Andreas‐David Brunner ,
Sabrina Richter ,
Mitchell P. Levesque ,
Fabian J. Theis
and 2 other authors
,
Ericka Cm Itang ,
Constantin Ammar ,
Florian A. Rosenberger ,
Isabell Bludau ,
Lisa Schweizer ,
Thierry M. Nordmann ,
Patricia Skowronek ,
Maria Wahle ,
Wen‐Feng Zeng ,
Xie‐Xuan Zhou,
Andreas‐David Brunner ,
Sabrina Richter ,
Mitchell P. Levesque ,
Fabian J. Theis
and 2 other authors
Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel
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Josh Moore ,
Daniela Basurto-Lozada ,
Daniela Basurto Lozada,
Sébastien Besson ,
John Bogovic ,
Jordão Bragantini ,
Eva Maxfield Brown ,
Jean-Marie Burel ,
Xavier Casas Moreno ,
Xavier Casas Moreno,
Gustavo Quintas Glasner de Medeiros ,
Erin E. Diel ,
David Gault,
Satrajit S. Ghosh ,
Ilan Gold
and 58 other authors
,
Daniela Basurto-Lozada ,
Daniela Basurto Lozada,
Sébastien Besson ,
John Bogovic ,
Jordão Bragantini ,
Eva Maxfield Brown ,
Jean-Marie Burel ,
Xavier Casas Moreno ,
Xavier Casas Moreno,
Gustavo Quintas Glasner de Medeiros ,
Erin E. Diel ,
David Gault,
Satrajit S. Ghosh ,
Ilan Gold
and 58 other authors
OME-Zarr: a cloud-optimized bioimaging file format with international community support
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Senani N. H. Rathnayake ,
Benedikt Ditz,
Brigitte W. M. Willemse,
Wim Timens ,
Wierd Kooistra,
Irene H. Heijink,
Brian G. G. Oliver,
Maarten van den Berge ,
Alen Faiz,
Hananeh Aliee,
Fabian J. Theis ,
M. C. Nawijn
,
Benedikt Ditz,
Brigitte W. M. Willemse,
Wim Timens ,
Wierd Kooistra,
Irene H. Heijink,
Brian G. G. Oliver,
Maarten van den Berge ,
Alen Faiz,
Hananeh Aliee,
Fabian J. Theis ,
M. C. Nawijn
Longitudinal Effects of 1-Year Smoking Cessation on Human Bronchial Epithelial Transcriptome
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Mohammad Lotfollahi,
Anna Klimovskaia Susmelj ,
Carlo De Donno ,
Leon Hetzel ,
Yuge Ji,
Ignacio L. Ibarra ,
Sanjay R. Srivatsan,
Mohsen Naghipourfar,
Riza M. Daza ,
Beth Martin,
Jay Shendure,
Jose L. McFaline‐Figueroa ,
Pierre Boyeau,
F. Alexander Wolf,
Nafissa Yakubova
and 4 other authors
,
Carlo De Donno ,
Leon Hetzel ,
Yuge Ji,
Ignacio L. Ibarra ,
Sanjay R. Srivatsan,
Mohsen Naghipourfar,
Riza M. Daza ,
Beth Martin,
Jay Shendure,
Jose L. McFaline‐Figueroa ,
Pierre Boyeau,
F. Alexander Wolf,
Nafissa Yakubova
and 4 other authors
Predicting cellular responses to complex perturbations in high‐throughput screens
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2022
A. Schäbitz ,
C. Hillig,
M. Mubarak,
M. Jargosch,
A. Farnoud,
E. Scala,
N. Kurzen ,
A. C. Pilz,
N. Bhalla ,
J. Thomas,
M. Stahle,
T. Biedermann ,
C. B. Schmidt-Weber ,
F. Theis ,
N. Garzorz-Stark
and 3 other authors
,
C. Hillig,
M. Mubarak,
M. Jargosch,
A. Farnoud,
E. Scala,
N. Kurzen ,
A. C. Pilz,
N. Bhalla ,
J. Thomas,
M. Stahle,
T. Biedermann ,
C. B. Schmidt-Weber ,
F. Theis ,
N. Garzorz-Stark
and 3 other authors
Spatial transcriptomics landscape of lesions from non-communicable inflammatory skin diseases
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Harsharan Singh Bhatia ,
Andreas-David Brunner ,
Furkan Öztürk,
Saketh Kapoor,
Zhouyi Rong ,
Hongcheng Mai,
Marvin Thielert ,
Mayar Ali ,
Rami Al-Maskari,
Johannes Christian Paetzold,
Florian Kofler ,
Mihail Ivilinov Todorov,
Muge Molbay,
Zeynep Ilgin Kolabas,
Moritz Negwer
and 16 other authors
,
Andreas-David Brunner ,
Furkan Öztürk,
Saketh Kapoor,
Zhouyi Rong ,
Hongcheng Mai,
Marvin Thielert ,
Mayar Ali ,
Rami Al-Maskari,
Johannes Christian Paetzold,
Florian Kofler ,
Mihail Ivilinov Todorov,
Muge Molbay,
Zeynep Ilgin Kolabas,
Moritz Negwer
and 16 other authors
Spatial proteomics in three-dimensional intact specimens
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Alessandro Zambusi,
Klara Tereza Novoselc,
Saskia Hutten,
Sofia Kalpazidou,
Christina Koupourtidou ,
Rico Schieweck,
Sven Aschenbroich,
Lara Silva,
Ayse Seda Yazgili ,
Frauke van Bebber,
Bettina Schmid ,
Gabriel Möller ,
Clara Tritscher,
Christian Stigloher ,
Claire Delbridge
and 10 other authors
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,
Rico Schieweck,
Sven Aschenbroich,
Lara Silva,
Ayse Seda Yazgili ,
Frauke van Bebber,
Bettina Schmid ,
Gabriel Möller ,
Clara Tritscher,
Christian Stigloher ,
Claire Delbridge
and 10 other authors
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Sebastian Schmidt ,
Malte D. Luecken ,
Dietrich Trümbach ,
Sina Hembach,
Kristina M. Niedermeier,
Nicole Wenck,
Klaus Pflügler,
Constantin Stautner,
Anika Böttcher ,
Heiko Lickert ,
Ciro Ramirez-Suastegui ,
Ruhel Ahmad,
Michael J. Ziller ,
Julia C. Fitzgerald,
Viktoria Ruf
and 9 other authors
,
Malte D. Luecken ,
Dietrich Trümbach ,
Sina Hembach,
Kristina M. Niedermeier,
Nicole Wenck,
Klaus Pflügler,
Constantin Stautner,
Anika Böttcher ,
Heiko Lickert ,
Ciro Ramirez-Suastegui ,
Ruhel Ahmad,
Michael J. Ziller ,
Julia C. Fitzgerald,
Viktoria Ruf
and 9 other authors
Primary cilia and SHH signaling impairments in human and mouse models of Parkinson’s disease
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Daniel Reichart ,
Eric L. Lindberg ,
Henrike Maatz ,
Antonio M. A. Miranda ,
Anissa Viveiros ,
Nikolay Shvetsov ,
Anna Gärtner ,
Emily R. Nadelmann ,
Michael Lee ,
Kazumasa Kanemaru ,
Jorge Ruiz-Orera ,
Viktoria Strohmenger ,
Daniel M. DeLaughter ,
Giannino Patone ,
Hao Zhang
and 39 other authors
,
Eric L. Lindberg ,
Henrike Maatz ,
Antonio M. A. Miranda ,
Anissa Viveiros ,
Nikolay Shvetsov ,
Anna Gärtner ,
Emily R. Nadelmann ,
Michael Lee ,
Kazumasa Kanemaru ,
Jorge Ruiz-Orera ,
Viktoria Strohmenger ,
Daniel M. DeLaughter ,
Giannino Patone ,
Hao Zhang
and 39 other authors
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
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Bo Hu,
Sara Lelek,
Bastiaan Spanjaard,
Hadil El-Sammak ,
Mariana Guedes Simões,
Janita Mintcheva,
Hananeh Aliee,
Ronny Schäfer,
Alexander M. Meyer,
Fabian Theis ,
Didier Y. R. Stainier ,
Daniela Panáková ,
Jan Philipp Junker
,
Mariana Guedes Simões,
Janita Mintcheva,
Hananeh Aliee,
Ronny Schäfer,
Alexander M. Meyer,
Fabian Theis ,
Didier Y. R. Stainier ,
Daniela Panáková ,
Jan Philipp Junker
Origin and function of activated fibroblast states during zebrafish heart regeneration
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Konstantin Lutz ,
Andrea Musumeci ,
Christopher Sie ,
Ezgi Dursun,
Elena Winheim ,
Johannes Bagnoli,
Christoph Ziegenhain ,
Lisa Rausch,
Volker Bergen ,
Malte D. Luecken ,
Robert A. J. Oostendorp ,
Barbara U. Schraml ,
Fabian J. Theis ,
Wolfgang Enard ,
Thomas Korn
and 1 other authors
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,
Andrea Musumeci ,
Christopher Sie ,
Ezgi Dursun,
Elena Winheim ,
Johannes Bagnoli,
Christoph Ziegenhain ,
Lisa Rausch,
Volker Bergen ,
Malte D. Luecken ,
Robert A. J. Oostendorp ,
Barbara U. Schraml ,
Fabian J. Theis ,
Wolfgang Enard ,
Thomas Korn
and 1 other authors
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Amit Frishberg ,
Emma Kooistra,
Melanie Nuesch-Germano ,
Tal Pecht ,
Neta Milman,
Nico Reusch,
Stefanie Warnat-Herresthal,
Niklas Bruse,
Kristian Händler ,
Heidi Theis ,
Michael Kraut,
Esther van Rijssen,
Bram van Cranenbroek ,
Hans J.-P.-M. Koenen,
Hidde Heesakkers
and 10 other authors
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,
Emma Kooistra,
Melanie Nuesch-Germano ,
Tal Pecht ,
Neta Milman,
Nico Reusch,
Stefanie Warnat-Herresthal,
Niklas Bruse,
Kristian Händler ,
Heidi Theis ,
Michael Kraut,
Esther van Rijssen,
Bram van Cranenbroek ,
Hans J.-P.-M. Koenen,
Hidde Heesakkers
and 10 other authors
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