All papers authored by Jeremy Goecks
Refreshing results…
2024
Katie E. Blise 
,
Shamilene Sivagnanam ,
Courtney B. Betts ,
Konjit Betre ,
Nell Kirchberger ,
Benjamin J. Tate ,
Emma E. Furth ,
Andressa Dias Costa ,
Jonathan A. Nowak ,
Brian M. Wolpin ,
Robert H. Vonderheide ,
Jeremy Goecks ,
Lisa M. Coussens ,
Katelyn T. Byrne
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,
Shamilene Sivagnanam ,
Courtney B. Betts ,
Konjit Betre ,
Nell Kirchberger ,
Benjamin J. Tate ,
Emma E. Furth ,
Andressa Dias Costa ,
Jonathan A. Nowak ,
Brian M. Wolpin ,
Robert H. Vonderheide ,
Jeremy Goecks ,
Lisa M. Coussens ,
Katelyn T. Byrne
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2022
Katie E. Blise ,
Shamilene Sivagnanam ,
Grace L. Banik ,
Lisa M. Coussens ,
Jeremy Goecks
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,
Shamilene Sivagnanam ,
Grace L. Banik ,
Lisa M. Coussens ,
Jeremy Goecks
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Brett E. Johnson ,
Allison L. Creason ,
Jayne M. Stommel ,
Jamie M. Keck,
Swapnil Parmar,
Courtney B. Betts,
Aurora Blucher ,
Christopher Boniface ,
Elmar Bucher,
Erik Burlingame,
Todd Camp,
Koei Chin,
Jennifer Eng,
Joseph Estabrook,
Heidi S. Feiler
and 31 other authors
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,
Allison L. Creason ,
Jayne M. Stommel ,
Jamie M. Keck,
Swapnil Parmar,
Courtney B. Betts,
Aurora Blucher ,
Christopher Boniface ,
Elmar Bucher,
Erik Burlingame,
Todd Camp,
Koei Chin,
Jennifer Eng,
Joseph Estabrook,
Heidi S. Feiler
and 31 other authors
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2021
Denis Schapiro,
Artem Sokolov ,
Clarence Yapp ,
Jeremy L. Muhlich ,
Joshua Hess ,
Yu-An Chen,
Allison L. Creason ,
Ajit J. Nirmal,
Jia-Ren Lin ,
Gregory J. Baker ,
Maulik K. Nariya,
Matthew W. Hodgman,
Zoltan Maliga,
Juha Ruokonen,
Connor A. Jacobson
and 12 other authors
,
Clarence Yapp ,
Jeremy L. Muhlich ,
Joshua Hess ,
Yu-An Chen,
Allison L. Creason ,
Ajit J. Nirmal,
Jia-Ren Lin ,
Gregory J. Baker ,
Maulik K. Nariya,
Matthew W. Hodgman,
Zoltan Maliga,
Juha Ruokonen,
Connor A. Jacobson
and 12 other authors
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
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Marilyne Labrie ,
Allen Li ,
Allison Creason ,
Courtney Betts,
Jamie Keck,
Brett Johnson ,
Shamilene Sivagnanam ,
Christopher Boniface ,
Hongli,
Hongli Ma,
Aurora Blucher,
Young Hwan Chang ,
Koei Chin ,
Jacqueline Vuky,
Alexander R. Guimaraes
and 14 other authors
Download from www.nature.com
,
Allen Li ,
Allison Creason ,
Courtney Betts,
Jamie Keck,
Brett Johnson ,
Shamilene Sivagnanam ,
Christopher Boniface ,
Hongli,
Hongli Ma,
Aurora Blucher,
Young Hwan Chang ,
Koei Chin ,
Jacqueline Vuky,
Alexander R. Guimaraes
and 14 other authors
Download from www.nature.com
Qiang Gu,
Anup Kumar ,
Simon Bray ,
Allison Creason ,
Alireza Khanteymoori ,
Vahid Jalili ,
Björn Grüning ,
Jeremy Goecks
,
Simon Bray ,
Allison Creason ,
Alireza Khanteymoori ,
Vahid Jalili ,
Björn Grüning ,
Jeremy Goecks
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
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2020
Luke Sargent ,
Yating Liu ,
Wilson Leung ,
Nathan T. Mortimer ,
David Lopatto,
Jeremy Goecks ,
Sarah C. R. Elgin
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,
Yating Liu ,
Wilson Leung ,
Nathan T. Mortimer ,
David Lopatto,
Jeremy Goecks ,
Sarah C. R. Elgin
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Vahid Jalili ,
Enis Afgan,
Qiang Gu,
Dave Clements ,
Daniel Blankenberg ,
Jeremy Goecks ,
James Taylor,
Anton Nekrutenko
,
Enis Afgan,
Qiang Gu,
Dave Clements ,
Daniel Blankenberg ,
Jeremy Goecks ,
James Taylor,
Anton Nekrutenko
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
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2018
Gil Alterovitz,
Dennis Dean,
Carole Goble ,
Michael R. Crusoe ,
Stian Soiland-Reyes ,
Amanda Bell ,
Anais Hayes,
Anita Suresh,
Anjan Purkayastha ,
Charles H. King ,
Dan Taylor,
Elaine Johanson,
Elaine E. Thompson ,
Eric Donaldson ,
Hiroki Morizono
and 22 other authors
,
Michael R. Crusoe ,
Stian Soiland-Reyes ,
Amanda Bell ,
Anais Hayes,
Anita Suresh,
Anjan Purkayastha ,
Charles H. King ,
Dan Taylor,
Elaine Johanson,
Elaine E. Thompson ,
Eric Donaldson ,
Hiroki Morizono
and 22 other authors
Enabling precision medicine via standard communication of HTS provenance, analysis, and results
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Jeet K. Vora ,
Gil Alterovitz ,
Dennis A. Dean,
Carole Goble ,
Michael R. Crusoe ,
Stian Soiland-Reyes ,
Dean Da,
Amanda Bell ,
Elaine E. Thompson ,
Anais Hayes,
Charles Hadley S. King ,
Crusoe Mr,
Hsinyi S. Tsang ,
KanakaDurga Addepalli,
Dan Taylor
and 25 other authors
,
Gil Alterovitz ,
Dennis A. Dean,
Carole Goble ,
Michael R. Crusoe ,
Stian Soiland-Reyes ,
Dean Da,
Amanda Bell ,
Elaine E. Thompson ,
Anais Hayes,
Charles Hadley S. King ,
Crusoe Mr,
Hsinyi S. Tsang ,
KanakaDurga Addepalli,
Dan Taylor
and 25 other authors
Enabling Precision Medicine via standard communication of NGS provenance, analysis, and results
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