All papers authored by Paul Khavari
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2023
Margaret G. Guo 
,
David L. Reynolds ,
Cheen E. Ang ,
Yingfei Liu ,
Yang Zhao,
Laura K. H. Donohue ,
Zurab Siprashvili,
Xue Yang,
Yongjin Yoo,
Smarajit Mondal ,
Audrey Hong,
Jessica Kain ,
Lindsey Meservey,
Tania Fabo ,
Ibtihal Elfaki
and 13 other authors
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,
David L. Reynolds ,
Cheen E. Ang ,
Yingfei Liu ,
Yang Zhao,
Laura K. H. Donohue ,
Zurab Siprashvili,
Xue Yang,
Yongjin Yoo,
Smarajit Mondal ,
Audrey Hong,
Jessica Kain ,
Lindsey Meservey,
Tania Fabo ,
Ibtihal Elfaki
and 13 other authors
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2022
Laura K. H. Donohue,
Margaret G. Guo ,
Yang Zhao,
Namyoung Jung,
Rose T. Bussat,
Daniel S. Kim,
Poornima H. Neela,
Laura N. Kellman,
Omar S. Garcia,
Robin M. Meyers,
Russ B. Altman,
Paul A. Khavari
,
Yang Zhao,
Namyoung Jung,
Rose T. Bussat,
Daniel S. Kim,
Poornima H. Neela,
Laura N. Kellman,
Omar S. Garcia,
Robin M. Meyers,
Russ B. Altman,
Paul A. Khavari
A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation
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Andrew Erickson,
Mengxiao He ,
Emelie Berglund,
Maja Marklund ,
Reza Mirzazadeh,
Niklas Schultz,
Linda Kvastad ,
Alma Andersson,
Ludvig Bergenstråhle,
Joseph Bergenstråhle ,
Ludvig Larsson ,
Leire Alonso Galicia ,
Alia Shamikh,
Elisa Basmaci,
Teresita Díaz De Ståhl
and 16 other authors
,
Emelie Berglund,
Maja Marklund ,
Reza Mirzazadeh,
Niklas Schultz,
Linda Kvastad ,
Alma Andersson,
Ludvig Bergenstråhle,
Joseph Bergenstråhle ,
Ludvig Larsson ,
Leire Alonso Galicia ,
Alia Shamikh,
Elisa Basmaci,
Teresita Díaz De Ståhl
and 16 other authors
Spatially resolved clonal copy number alterations in benign and malignant tissue
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Smarajit Mondal ,
Muthukumar Ramanathan,
Weili Miao ,
Robin M. Meyers,
Deepti Rao,
Vanessa Lopez-Pajares ,
Zurab Siprashvili,
David L. Reynolds ,
Douglas F. Porter,
Ian Ferguson,
Poornima Neela,
Yang Zhao,
Lindsey M. Meservey,
Margaret Guo ,
Yen-Yu Yang
and 3 other authors
,
Muthukumar Ramanathan,
Weili Miao ,
Robin M. Meyers,
Deepti Rao,
Vanessa Lopez-Pajares ,
Zurab Siprashvili,
David L. Reynolds ,
Douglas F. Porter,
Ian Ferguson,
Poornima Neela,
Yang Zhao,
Lindsey M. Meservey,
Margaret Guo ,
Yen-Yu Yang
and 3 other authors
PROBER identifies proteins associated with programmable sequence-specific DNA in living cells
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2021
Ludvig Bergenstråhle ,
Bryan He ,
Joseph Bergenstråhle,
Xesús Abalo ,
Reza Mirzazadeh,
Kim Thrane ,
Andrew L. Ji ,
Alma Andersson,
Ludvig Larsson ,
Nathalie Stakenborg ,
Guy Boeckxstaens,
Paul Khavari ,
James Zou ,
Joakim Lundeberg ,
Jonas Maaskola
,
Bryan He ,
Joseph Bergenstråhle,
Xesús Abalo ,
Reza Mirzazadeh,
Kim Thrane ,
Andrew L. Ji ,
Alma Andersson,
Ludvig Larsson ,
Nathalie Stakenborg ,
Guy Boeckxstaens,
Paul Khavari ,
James Zou ,
Joakim Lundeberg ,
Jonas Maaskola
Super-resolved spatial transcriptomics by deep data fusion
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Daniel S. Kim ,
Viviana I. Risca,
David L. Reynolds,
James Chappell,
Adam J. Rubin,
Namyoung Jung,
Laura K. H. Donohue ,
Vanessa Lopez-Pajares,
Arwa Kathiria,
Minyi Shi,
Zhixin Zhao,
Harsh Deep,
Mahfuza Sharmin,
Deepti Rao,
Shin Lin
and 5 other authors
,
Viviana I. Risca,
David L. Reynolds,
James Chappell,
Adam J. Rubin,
Namyoung Jung,
Laura K. H. Donohue ,
Vanessa Lopez-Pajares,
Arwa Kathiria,
Minyi Shi,
Zhixin Zhao,
Harsh Deep,
Mahfuza Sharmin,
Deepti Rao,
Shin Lin
and 5 other authors
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
Download from www.nature.com
Sophia K. Longo ,
Margaret G. Guo ,
Andrew L. Ji ,
Paul A. Khavari
,
Margaret G. Guo ,
Andrew L. Ji ,
Paul A. Khavari
Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
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2020
Kavita Y. Sarin ,
Yuan Lin ,
Roxana Daneshjou ,
Andrey Ziyatdinov,
Gudmar Thorleifsson,
Adam Rubin,
Luba M. Pardo,
Wenting Wu,
Paul A. Khavari ,
Andre Uitterlinden ,
Tamar Nijsten ,
Amanda E. Toland ,
Jon H. Olafsson,
Bardur Sigurgeirsson ,
Kristin Thorisdottir
and 7 other authors
Download from www.nature.com
,
Yuan Lin ,
Roxana Daneshjou ,
Andrey Ziyatdinov,
Gudmar Thorleifsson,
Adam Rubin,
Luba M. Pardo,
Wenting Wu,
Paul A. Khavari ,
Andre Uitterlinden ,
Tamar Nijsten ,
Amanda E. Toland ,
Jon H. Olafsson,
Bardur Sigurgeirsson ,
Kristin Thorisdottir
and 7 other authors
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2019
Maxwell R. Mumbach,
Jeffrey M. Granja,
Ryan A. Flynn ,
Caitlin M. Roake,
Ansuman T. Satpathy ,
Adam J. Rubin,
Yanyan Qi,
Zhaozhao Jiang,
Shadi Shams,
Bryan H. Louie,
Jimmy K. Guo,
David G. Gennert,
M. Ryan Corces,
Paul A. Khavari ,
Maninjay K. Atianand
and 4 other authors
,
Caitlin M. Roake,
Ansuman T. Satpathy ,
Adam J. Rubin,
Yanyan Qi,
Zhaozhao Jiang,
Shadi Shams,
Bryan H. Louie,
Jimmy K. Guo,
David G. Gennert,
M. Ryan Corces,
Paul A. Khavari ,
Maninjay K. Atianand
and 4 other authors
HiChIRP reveals RNA-associated chromosome conformation
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2018
Ansuman T. Satpathy ,
Naresha Saligrama,
Jason D. Buenrostro,
Yuning Wei,
Beijing Wu,
Adam J. Rubin,
Jeffrey M. Granja,
Caleb A. Lareau ,
Rui Li,
Yanyan Qi,
Kevin R. Parker ,
Maxwell R. Mumbach,
William S. Serratelli,
David G. Gennert,
Alicia N. Schep
and 7 other authors
,
Naresha Saligrama,
Jason D. Buenrostro,
Yuning Wei,
Beijing Wu,
Adam J. Rubin,
Jeffrey M. Granja,
Caleb A. Lareau ,
Rui Li,
Yanyan Qi,
Kevin R. Parker ,
Maxwell R. Mumbach,
William S. Serratelli,
David G. Gennert,
Alicia N. Schep
and 7 other authors
Transcript-indexed ATAC-seq for precision immune profiling
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2017
Adam J. Rubin,
Brook C. Barajas,
Mayra Furlan-Magaril,
Vanessa Lopez-Pajares,
Maxwell R. Mumbach,
Imani Howard,
Daniel S. Kim ,
Lisa D. Boxer,
Jonathan Cairns,
Mikhail Spivakov ,
Steven W. Wingett ,
Minyi Shi,
Zhixin Zhao,
William J. Greenleaf ,
Anshul Kundaje
and 4 other authors
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,
Lisa D. Boxer,
Jonathan Cairns,
Mikhail Spivakov ,
Steven W. Wingett ,
Minyi Shi,
Zhixin Zhao,
William J. Greenleaf ,
Anshul Kundaje
and 4 other authors
Download from www.nature.com
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