Researcher
Robert Finn
European Bioinformatics Institute
Statistics
23 papers found
All papers authored by Robert Finn
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2024
Robert D. Finn 
,
Bachir Balech ,
Josephine Burgin ,
Physilia Chua ,
Erwan Corre,
Cymon J. Cox,
Claudio Donati,
Vitor Martins dos Santos,
Bruno Fosso,
John Hancock,
Katharina F. Heil ,
Naveed Ishaque ,
Varsha Kale,
Benoit J. Kunath,
Claudine Médigue
and 10 other authors
,
Bachir Balech ,
Josephine Burgin ,
Physilia Chua ,
Erwan Corre,
Cymon J. Cox,
Claudio Donati,
Vitor Martins dos Santos,
Bruno Fosso,
John Hancock,
Katharina F. Heil ,
Naveed Ishaque ,
Varsha Kale,
Benoit J. Kunath,
Claudine Médigue
and 10 other authors
Establishing the ELIXIR Microbiome Community
Download from doi.org
2023
Peter W. Harrison ,
M. Ridwan Amode,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
Matthieu Barba,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks,
Shashank Budhanuru Ramaraju
and 83 other authors
Download from doi.org
,
M. Ridwan Amode,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
Matthieu Barba,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks,
Shashank Budhanuru Ramaraju
and 83 other authors
Download from doi.org
Thomas S. B. Schmidt ,
Anthony Fullam ,
Pamela Ferretti ,
Askarbek Orakov ,
Oleksandr M. Maistrenko ,
Hans-Joachim Ruscheweyh ,
Ivica Letunic ,
Yiqian Duan ,
Thea Van Rossum ,
Shinichi Sunagawa ,
Daniel R. Mende ,
Robert D. Finn ,
Michael Kuhn ,
Luis Pedro Coelho ,
Peer Bork
,
Anthony Fullam ,
Pamela Ferretti ,
Askarbek Orakov ,
Oleksandr M. Maistrenko ,
Hans-Joachim Ruscheweyh ,
Ivica Letunic ,
Yiqian Duan ,
Thea Van Rossum ,
Shinichi Sunagawa ,
Daniel R. Mende ,
Robert D. Finn ,
Michael Kuhn ,
Luis Pedro Coelho ,
Peer Bork
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource
Download from doi.org
2022
Haris Zafeiropoulos ,
Martin Beracochea ,
Stelios Ninidakis ,
Katrina Exter ,
Antonis Potirakis,
Gianluca De Moro ,
Lorna Richardson ,
Erwan Corre ,
João Machado ,
Evangelos Pafilis ,
Georgios Kotoulas,
Ioulia Santi ,
Robert D. Finn ,
Cymon J. Cox ,
Christina Pavloudi
,
Martin Beracochea ,
Stelios Ninidakis ,
Katrina Exter ,
Antonis Potirakis,
Gianluca De Moro ,
Lorna Richardson ,
Erwan Corre ,
João Machado ,
Evangelos Pafilis ,
Georgios Kotoulas,
Ioulia Santi ,
Robert D. Finn ,
Cymon J. Cox ,
Christina Pavloudi
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data
Download from doi.org
Lorna Richardson ,
Ben Allen,
Germana Baldi,
Martin Beracochea,
Maxwell L. Bileschi,
Tony Burdett ,
Josephine Burgin ,
Juan Caballero-Pérez ,
Guy Cochrane ,
Lucy J. Colwell,
Tom Curtis,
Alejandra Escobar-Zepeda,
Tatiana A. Gurbich ,
Varsha Kale,
Anton Korobeynikov
and 6 other authors
,
Ben Allen,
Germana Baldi,
Martin Beracochea,
Maxwell L. Bileschi,
Tony Burdett ,
Josephine Burgin ,
Juan Caballero-Pérez ,
Guy Cochrane ,
Lucy J. Colwell,
Tom Curtis,
Alejandra Escobar-Zepeda,
Tatiana A. Gurbich ,
Varsha Kale,
Anton Korobeynikov
and 6 other authors
MGnify: the microbiome sequence data analysis resource in 2023
Download from academic.oup.com
Qiang Lin,
Basil Britto Xavier ,
Blaise T. F. Alako ,
Alex L. Mitchell,
Sahaya Glingston Rajakani,
Youri Glupczynski,
Robert D. Finn ,
Guy Cochrane,
Surbhi Malhotra-Kumar
Download from www.nature.com
,
Blaise T. F. Alako ,
Alex L. Mitchell,
Sahaya Glingston Rajakani,
Youri Glupczynski,
Robert D. Finn ,
Guy Cochrane,
Surbhi Malhotra-Kumar
Download from www.nature.com
Fergal J. Martin ,
M. Ridwan Amode,
Alisha Aneja,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Alexandra Bignell,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks
and 81 other authors
Download from academic.oup.com
,
M. Ridwan Amode,
Alisha Aneja,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Alexandra Bignell,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks
and 81 other authors
Download from academic.oup.com
Andrew D. Yates ,
James Allen,
Ridwan M. Amode,
Andrey G. Azov,
Matthieu Barba ,
Andrés Becerra,
Jyothish Bhai,
Lahcen I. Campbell,
Manuel Carbajo Martinez,
Marc Chakiachvili,
Kapeel Chougule,
Mikkel Christensen,
Bruno Contreras-Moreira,
Alayne Cuzick ,
Luca Da Rin Fioretto
and 50 other authors
,
James Allen,
Ridwan M. Amode,
Andrey G. Azov,
Matthieu Barba ,
Andrés Becerra,
Jyothish Bhai,
Lahcen I. Campbell,
Manuel Carbajo Martinez,
Marc Chakiachvili,
Kapeel Chougule,
Mikkel Christensen,
Bruno Contreras-Moreira,
Alayne Cuzick ,
Luca Da Rin Fioretto
and 50 other authors
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
Download from doi.org
Nishadi H. De Silva ,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data
Download from doi.org
2020
Ioanna Kalvari ,
Eric P. Nawrocki ,
Nancy Ontiveros-Palacios ,
Joanna Argasinska ,
Kevin Lamkiewicz ,
Manja Marz ,
Sam Griffiths-Jones ,
Claire Toffano-Nioche ,
Daniel Gautheret ,
Zasha Weinberg ,
Elena Rivas ,
Sean R. Eddy ,
Robert D. Finn ,
Alex Bateman ,
Anton I. Petrov
,
Eric P. Nawrocki ,
Nancy Ontiveros-Palacios ,
Joanna Argasinska ,
Kevin Lamkiewicz ,
Manja Marz ,
Sam Griffiths-Jones ,
Claire Toffano-Nioche ,
Daniel Gautheret ,
Zasha Weinberg ,
Elena Rivas ,
Sean R. Eddy ,
Robert D. Finn ,
Alex Bateman ,
Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
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Matthias Blum ,
Hsin-Yu Chang,
Sara Chuguransky ,
Tiago Grego,
Swaathi Kandasaamy,
Alex Mitchell ,
Gift Nuka,
Typhaine Paysan-Lafosse,
Matloob Qureshi ,
Shriya Raj ,
Lorna Richardson ,
Gustavo A. Salazar,
Lowri Williams ,
Peer Bork,
Alan Bridge
and 18 other authors
,
Hsin-Yu Chang,
Sara Chuguransky ,
Tiago Grego,
Swaathi Kandasaamy,
Alex Mitchell ,
Gift Nuka,
Typhaine Paysan-Lafosse,
Matloob Qureshi ,
Shriya Raj ,
Lorna Richardson ,
Gustavo A. Salazar,
Lowri Williams ,
Peer Bork,
Alan Bridge
and 18 other authors
The InterPro protein families and domains database: 20 years on
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Jaina Mistry ,
Sara Chuguransky ,
Lowri Williams ,
Matloob Qureshi ,
Gustavo A. Salazar,
Erik L. L. Sonnhammer,
Silvio C. E. Tosatto ,
Lisanna Paladin ,
Shriya Raj ,
Lorna J. Richardson ,
Robert D. Finn ,
Alex Bateman
,
Sara Chuguransky ,
Lowri Williams ,
Matloob Qureshi ,
Gustavo A. Salazar,
Erik L. L. Sonnhammer,
Silvio C. E. Tosatto ,
Lisanna Paladin ,
Shriya Raj ,
Lorna J. Richardson ,
Robert D. Finn ,
Alex Bateman
Pfam: The protein families database in 2021
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2019
Alex L. Mitchell ,
Alexandre Almeida ,
Martin Beracochea,
Miguel Boland ,
Josephine Burgin ,
Guy Cochrane ,
Michael R. Crusoe,
Varsha Kale,
Simon C. Potter,
Lorna J. Richardson ,
Ekaterina Sakharova,
Maxim Scheremetjew ,
Anton Korobeynikov ,
Alex Shlemov,
Olga Kunyavskaya
and 2 other authors
,
Alexandre Almeida ,
Martin Beracochea,
Miguel Boland ,
Josephine Burgin ,
Guy Cochrane ,
Michael R. Crusoe,
Varsha Kale,
Simon C. Potter,
Lorna J. Richardson ,
Ekaterina Sakharova,
Maxim Scheremetjew ,
Anton Korobeynikov ,
Alex Shlemov,
Olga Kunyavskaya
and 2 other authors
MGnify: the microbiome analysis resource in 2020
Download from doi.org
Stephen Nayfach,
Miguel Boland,
Francesco Strozzi,
Martin Beracochea,
Zhou Jason Shi,
Katherine S. Pollard,
Donovan H. Parks,
Philip Hugenholtz ,
Nicola Segata ,
Nikos C. Kyrpides ,
Robert D. Finn ,
Alexandre Almeida
,
Nicola Segata ,
Nikos C. Kyrpides ,
Robert D. Finn ,
Alexandre Almeida
A unified sequence catalogue of over 280,000 genomes obtained from the human gut microbiome
Upload
Fábio Madeira,
Young mi Park,
Joon Lee,
Nicola Buso,
Tamer Gur ,
Nandana Madhusoodanan,
Prasad Basutkar,
Adrian R. N. Tivey,
Simon C. Potter ,
Robert D. Finn ,
Rodrigo Lopez
,
Nandana Madhusoodanan,
Prasad Basutkar,
Adrian R. N. Tivey,
Simon C. Potter ,
Robert D. Finn ,
Rodrigo Lopez
The EMBL-EBI search and sequence analysis tools APIs in 2019
Download from doi.org
Samuel C. Forster ,
Nitin Kumar,
Blessing O. Anonye ,
Alexandre Almeida ,
Elisa Viciani,
Mark D. Stares,
Matthew Dunn,
Tapoka T. Mkandawire,
Ana Zhu,
Yan Shao ,
Lindsay J. Pike,
Thomas Louie,
Hilary P. Browne ,
Alex L. Mitchell,
B. Anne Neville
and 3 other authors
,
Nitin Kumar,
Blessing O. Anonye ,
Alexandre Almeida ,
Elisa Viciani,
Mark D. Stares,
Matthew Dunn,
Tapoka T. Mkandawire,
Ana Zhu,
Yan Shao ,
Lindsay J. Pike,
Thomas Louie,
Hilary P. Browne ,
Alex L. Mitchell,
B. Anne Neville
and 3 other authors
A human gut bacterial genome and culture collection for improved metagenomic analyses
Download from www.nature.com
Simon C. Potter ,
Aurélien Luciani ,
Sean R. Eddy ,
Youngmi Park,
Rodrigo Lopez,
Robert D. Finn
Download from doi.org
,
Aurélien Luciani ,
Sean R. Eddy ,
Youngmi Park,
Rodrigo Lopez,
Robert D. Finn
Download from doi.org
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