All papers authored by Paul Flicek
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2023
Wen-Wei Liao 
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng,
Justin Chu,
Vincenza Colonna
and 104 other authors
,
Mobin Asri,
Jana Ebler,
Daniel Doerr ,
Marina Haukness ,
Glenn Hickey,
Shuangjia Lu ,
Julian K. Lucas,
Jean Monlong,
Haley J. Abel,
Silvia Buonaiuto,
Xian H. Chang,
Haoyu Cheng,
Justin Chu,
Vincenza Colonna
and 104 other authors
A draft human pangenome reference
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2022
Adam Frankish ,
Sílvia Carbonell-Sala,
Mark Diekhans ,
Irwin Jungreis ,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Carme Arnan ,
If Barnes,
Abhimanyu Banerjee,
Ruth Bennett,
Andrew Berry,
Alexandra Bignell,
Carles Boix
and 47 other authors
,
Sílvia Carbonell-Sala,
Mark Diekhans ,
Irwin Jungreis ,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Carme Arnan ,
If Barnes,
Abhimanyu Banerjee,
Ruth Bennett,
Andrew Berry,
Alexandra Bignell,
Carles Boix
and 47 other authors
GENCODE: reference annotation for the human and mouse genomes in 2023
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Fergal J. Martin ,
M. Ridwan Amode,
Alisha Aneja,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Alexandra Bignell,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks
and 81 other authors
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,
M. Ridwan Amode,
Alisha Aneja,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Arne Becker,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Simarpreet Kaur Bhurji,
Alexandra Bignell,
Sanjay Boddu,
Paulo R. Branco Lins,
Lucy Brooks
and 81 other authors
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Joannella Morales,
Shashikant Pujar,
Jane E. Loveland,
Alex Astashyn,
Ruth Bennett,
Andrew Berry,
Eric Cox ,
Claire Davidson,
Olga Ermolaeva,
Catherine M. Farrell,
Reham Fatima,
Laurent Gil,
Tamara Goldfarb,
Jose M. Gonzalez ,
Diana Haddad
and 25 other authors
,
Claire Davidson,
Olga Ermolaeva,
Catherine M. Farrell,
Reham Fatima,
Laurent Gil,
Tamara Goldfarb,
Jose M. Gonzalez ,
Diana Haddad
and 25 other authors
A joint NCBI and EMBL-EBI transcript set for clinical genomics and research
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2021
Gaia Cantelli ,
Alex Bateman ,
Cath Brooksbank,
Anton I. Petrov ,
Rahuman S. Malik-Sheriff ,
Michele Ide-Smith,
Henning Hermjakob ,
Paul Flicek ,
Rolf Apweiler,
Ewan Birney ,
Johanna McEntyre
,
Alex Bateman ,
Cath Brooksbank,
Anton I. Petrov ,
Rahuman S. Malik-Sheriff ,
Michele Ide-Smith,
Henning Hermjakob ,
Paul Flicek ,
Rolf Apweiler,
Ewan Birney ,
Johanna McEntyre
The European Bioinformatics Institute (EMBL-EBI) in 2021
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Fiona Cunningham ,
James E. Allen,
Jamie Allen ,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean ,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Alexandra Bignell,
Konstantinos Billis ,
Sanjay Boddu
and 80 other authors
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,
James E. Allen,
Jamie Allen ,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean ,
Olanrewaju Austine-Orimoloye,
Andrey G. Azov,
If Barnes,
Ruth Bennett,
Andrew Berry,
Jyothish Bhai,
Alexandra Bignell,
Konstantinos Billis ,
Sanjay Boddu
and 80 other authors
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Mallory Ann Freeberg ,
Lauren A. Fromont ,
Teresa D’Altri ,
Anna Foix Romero,
Jorge Izquierdo Ciges,
Aina Jene,
Giselle Kerry,
Mauricio Moldes,
Roberto Ariosa,
Silvia Bahena,
Daniel Barrowdale,
Marcos Casado Barbero,
Dietmar Fernandez-Orth,
Carles Garcia-Linares,
Emilio Garcia-Rios
and 20 other authors
,
Lauren A. Fromont ,
Teresa D’Altri ,
Anna Foix Romero,
Jorge Izquierdo Ciges,
Aina Jene,
Giselle Kerry,
Mauricio Moldes,
Roberto Ariosa,
Silvia Bahena,
Daniel Barrowdale,
Marcos Casado Barbero,
Dietmar Fernandez-Orth,
Carles Garcia-Linares,
Emilio Garcia-Rios
and 20 other authors
The European Genome-phenome Archive in 2021
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Andrew D. Yates ,
James Allen,
Ridwan M. Amode,
Andrey G. Azov,
Matthieu Barba ,
Andrés Becerra,
Jyothish Bhai,
Lahcen I. Campbell,
Manuel Carbajo Martinez,
Marc Chakiachvili,
Kapeel Chougule,
Mikkel Christensen,
Bruno Contreras-Moreira,
Alayne Cuzick ,
Luca Da Rin Fioretto
and 50 other authors
,
James Allen,
Ridwan M. Amode,
Andrey G. Azov,
Matthieu Barba ,
Andrés Becerra,
Jyothish Bhai,
Lahcen I. Campbell,
Manuel Carbajo Martinez,
Marc Chakiachvili,
Kapeel Chougule,
Mikkel Christensen,
Bruno Contreras-Moreira,
Alayne Cuzick ,
Luca Da Rin Fioretto
and 50 other authors
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates
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Heidi L. Rehm ,
Angela J. H. Page ,
Lindsay Smith ,
Jeremy B. Adams ,
Gil Alterovitz,
Lawrence J. Babb ,
Maxmillian P. Barkley,
Michael Baudis ,
Michael J. S. Beauvais ,
Tim Beck ,
Jacques S. Beckmann ,
Sergi Beltran ,
David Bernick,
Alexander Bernier,
James K. Bonfield
and 187 other authors
,
Angela J. H. Page ,
Lindsay Smith ,
Jeremy B. Adams ,
Gil Alterovitz,
Lawrence J. Babb ,
Maxmillian P. Barkley,
Michael Baudis ,
Michael J. S. Beauvais ,
Tim Beck ,
Jacques S. Beckmann ,
Sergi Beltran ,
David Bernick,
Alexander Bernier,
James K. Bonfield
and 187 other authors
GA4GH: International policies and standards for data sharing across genomic research and healthcare
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Timothe Cezard ,
Fiona Cunningham ,
Sarah E. Hunt ,
Baron Koylass,
Nitin Kumar,
Gary Saunders ,
April Shen,
Andres F. Silva,
Kirill Tsukanov ,
Sundararaman Venkataraman,
Paul Flicek ,
Helen Parkinson,
Thomas M. Keane
,
Fiona Cunningham ,
Sarah E. Hunt ,
Baron Koylass,
Nitin Kumar,
Gary Saunders ,
April Shen,
Andres F. Silva,
Kirill Tsukanov ,
Sundararaman Venkataraman,
Paul Flicek ,
Helen Parkinson,
Thomas M. Keane
The European Variation Archive: a FAIR resource of genomic variation for all species
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Beatrice Amos,
Cristina Aurrecoechea,
Matthieu Barba ,
Ana Barreto,
Evelina Y. Basenko,
Wojciech Bażant,
Robert Belnap,
Ann S. Blevins,
Ulrike Böhme,
John Brestelli,
Brian P. Brunk,
Mark Caddick ,
Danielle Callan,
Lahcen Campbell,
Mikkel B. Christensen
and 51 other authors
,
Ana Barreto,
Evelina Y. Basenko,
Wojciech Bażant,
Robert Belnap,
Ann S. Blevins,
Ulrike Böhme,
John Brestelli,
Brian P. Brunk,
Mark Caddick ,
Danielle Callan,
Lahcen Campbell,
Mikkel B. Christensen
and 51 other authors
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center
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Nishadi H. De Silva ,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
,
Jyothish Bhai,
Marc Chakiachvili,
Bruno Contreras-Moreira,
Carla Cummins,
Adam Frankish ,
Astrid Gall,
Thiago Genez,
Kevin L. Howe ,
Sarah E. Hunt ,
Fergal J. Martin ,
Benjamin Moore,
Denye Ogeh,
Anne Parker,
Andrew Parton
and 12 other authors
The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data
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Arang Rhie ,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas ,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Gregory L. Gedman,
Mark Chaisson,
Lindsey J. Cantin,
Chul Lee,
Francoise Thibaud-Nissen ,
Leanne Haggerty
and 114 other authors
,
Shane A. McCarthy,
Olivier Fedrigo ,
Joana Damas ,
Giulio Formenti ,
Sergey Koren ,
Marcela Uliano-Silva ,
William Chow ,
Arkarachai Fungtammasan ,
Gregory L. Gedman,
Mark Chaisson,
Lindsey J. Cantin,
Chul Lee,
Francoise Thibaud-Nissen ,
Leanne Haggerty
and 114 other authors
Towards complete and error-free genome assemblies of all vertebrate species
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Peter Ebert ,
Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
,
Peter A. Audano ,
Qihui Zhu ,
Bernardo Rodriguez-Martin ,
David Porubsky ,
Marc Jan Bonder ,
Arvis Sulovari ,
Jana Ebler ,
Weichen Zhou ,
Rebecca Serra Mari ,
Feyza Yilmaz ,
Xuefang Zhao ,
PingHsun Hsieh ,
Joyce Lee ,
Sushant Kumar
and 50 other authors
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
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Anoushka Joglekar ,
Andrey Prjibelski,
Ahmed Mahfouz,
Paul Collier,
Susan Lin ,
Anna Katharina Schlusche,
Jordan Marrocco ,
Stephen R. Williams,
Bettina Haase,
Ashley Hayes,
Jennifer G. Chew,
Neil I. Weisenfeld,
Man Ying Wong,
Alexander N. Stein,
Simon A. Hardwick
and 15 other authors
,
Andrey Prjibelski,
Ahmed Mahfouz,
Paul Collier,
Susan Lin ,
Anna Katharina Schlusche,
Jordan Marrocco ,
Stephen R. Williams,
Bettina Haase,
Ashley Hayes,
Jennifer G. Chew,
Neil I. Weisenfeld,
Man Ying Wong,
Alexander N. Stein,
Simon A. Hardwick
and 15 other authors
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
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2020
Adam Frankish ,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
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,
Mark Diekhans ,
Irwin Jungreis ,
Julien Lagarde,
Jane E. Loveland ,
Jonathan M. Mudge,
Cristina Sisu,
James C. Wright,
Joel Armstrong,
If Barnes,
Andrew Berry,
Alexandra Bignell,
Carles Boix,
Silvia Carbonell Sala,
Fiona Cunningham
and 41 other authors
Download from academic.oup.com
Gaia Cantelli ,
Guy Cochrane ,
Cath Brooksbank,
Ellen McDonagh ,
Paul Flicek ,
Johanna McEntyre,
Ewan Birney,
Rolf Apweiler
,
Guy Cochrane ,
Cath Brooksbank,
Ellen McDonagh ,
Paul Flicek ,
Johanna McEntyre,
Ewan Birney,
Rolf Apweiler
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis
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Marcela K. Tello-Ruiz ,
Sushma Naithani ,
Parul Gupta,
Andrew Olson,
Sharon Wei,
Justin Preece,
Yinping Jiao,
Bo Wang,
Kapeel Chougule,
Priyanka Garg,
Justin Elser,
Sunita Kumari,
Vivek Kumar,
Bruno Contreras-Moreira,
Guy Naamati
and 14 other authors
,
Sushma Naithani ,
Parul Gupta,
Andrew Olson,
Sharon Wei,
Justin Preece,
Yinping Jiao,
Bo Wang,
Kapeel Chougule,
Priyanka Garg,
Justin Elser,
Sunita Kumari,
Vivek Kumar,
Bruno Contreras-Moreira,
Guy Naamati
and 14 other authors
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research
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Kevin L. Howe ,
Premanand Achuthan,
James Allen ,
Jamie Allen,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean,
Andrey G. Azov,
Ruth Bennett,
Jyothish Bhai,
Konstantinos Billis,
Sanjay Boddu,
Mehrnaz Charkhchi,
Carla Cummins,
Luca Da Rin Fioretto
and 64 other authors
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,
Premanand Achuthan,
James Allen ,
Jamie Allen,
Jorge Alvarez-Jarreta,
M. Ridwan Amode,
Irina M. Armean,
Andrey G. Azov,
Ruth Bennett,
Jyothish Bhai,
Konstantinos Billis,
Sanjay Boddu,
Mehrnaz Charkhchi,
Carla Cummins,
Luca Da Rin Fioretto
and 64 other authors
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