All papers authored by Tyler Alioto
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2024
Marina Marcet-Houben 
,
Fernando Cruz ,
Jéssica Gómez-Garrido ,
Tyler S. Alioto ,
Juan Carlos Nunez-Rodriguez ,
Nebai Mesanza ,
Marta Gut ,
Eugenia Iturritxa ,
Toni Gabaldon
Download from doi.org
,
Fernando Cruz ,
Jéssica Gómez-Garrido ,
Tyler S. Alioto ,
Juan Carlos Nunez-Rodriguez ,
Nebai Mesanza ,
Marta Gut ,
Eugenia Iturritxa ,
Toni Gabaldon
Download from doi.org
2023
Tyler S. Alioto ,
Marta Gut ,
Bruno Kotska Rodiño-Janeiro ,
Fernando Cruz ,
Jèssica Gómez-Garrido ,
Juan Carlos Vázquez-Ucha ,
Caterina Mata ,
Regina Antoni ,
Ferran Briansó ,
Marc Dabad ,
Eloi Casals,
Matthew Ingham,
Miguel Álvarez-Tejado,
Germán Bou ,
Ivo G. Gut
Download from doi.org
,
Marta Gut ,
Bruno Kotska Rodiño-Janeiro ,
Fernando Cruz ,
Jèssica Gómez-Garrido ,
Juan Carlos Vázquez-Ucha ,
Caterina Mata ,
Regina Antoni ,
Ferran Briansó ,
Marc Dabad ,
Eloi Casals,
Matthew Ingham,
Miguel Álvarez-Tejado,
Germán Bou ,
Ivo G. Gut
Download from doi.org
2022
Jorge Arca-Suárez,
Bruno K. Rodiño-Janeiro ,
Astrid Pérez ,
Paula Guijarro-Sánchez ,
Juan C. Vázquez-Ucha ,
Fernando Cruz,
Jèssica Gómez-Garrido ,
Tyler S. Alioto ,
Miguel Álvarez-Tejado,
Marta Gut,
Ivo Gut,
Marina Oviaño,
Alejandro Beceiro ,
Germán Bou,
Irene Merino
and 25 other authors
Upload
,
Astrid Pérez ,
Paula Guijarro-Sánchez ,
Juan C. Vázquez-Ucha ,
Fernando Cruz,
Jèssica Gómez-Garrido ,
Tyler S. Alioto ,
Miguel Álvarez-Tejado,
Marta Gut,
Ivo Gut,
Marina Oviaño,
Alejandro Beceiro ,
Germán Bou,
Irene Merino
and 25 other authors
Upload
2021
Julie Thomy,
Frederic Sanchez,
Marta Gut,
Gwenael Piganeau,
Sheree Yau ,
Fernando Cruz,
Tyler Alioto ,
Nigel Grimsley
Download from doi.org
,
Fernando Cruz,
Tyler Alioto ,
Nigel Grimsley
Download from doi.org
2020
Isabel Almudi ,
Joel Vizueta ,
Christopher D. R. Wyatt,
Alex de Mendoza ,
Ferdinand Marlétaz ,
Panos N. Firbas,
Roberto Feuda,
Giulio Masiero,
Patricia Medina ,
Ana Alcaina-Caro ,
Fernando Cruz ,
Jessica Gómez-Garrido ,
Marta Gut,
Tyler S. Alioto ,
Carlos Vargas-Chavez
and 11 other authors
,
Joel Vizueta ,
Christopher D. R. Wyatt,
Alex de Mendoza ,
Ferdinand Marlétaz ,
Panos N. Firbas,
Roberto Feuda,
Giulio Masiero,
Patricia Medina ,
Ana Alcaina-Caro ,
Fernando Cruz ,
Jessica Gómez-Garrido ,
Marta Gut,
Tyler S. Alioto ,
Carlos Vargas-Chavez
and 11 other authors
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings
Download from www.nature.com
2019
Jean-Baptiste Ledoux ,
Fernando Cruz ,
Jèssica Gómez-Garrido ,
Jèssica Gomez-Garrido,
Regina Antoni ,
Julie Blanc ,
Daniel Gómez-Gras ,
Silvija Kipson ,
Paula López-Sendino ,
Agostinho Antunes ,
Cristina Linares ,
Marta Gut ,
Tyler S. Alioto ,
Joaquim Garrabou
Download from academic.oup.com
,
Fernando Cruz ,
Jèssica Gómez-Garrido ,
Jèssica Gomez-Garrido,
Regina Antoni ,
Julie Blanc ,
Daniel Gómez-Gras ,
Silvija Kipson ,
Paula López-Sendino ,
Agostinho Antunes ,
Cristina Linares ,
Marta Gut ,
Tyler S. Alioto ,
Joaquim Garrabou
Download from academic.oup.com
2015
Tyler S. Alioto ,
Ivo Buchhalter ,
Sophia Derdak,
Barbara Hutter ,
Matthew D. Eldridge,
Eivind Hovig ,
Lawrence E. Heisler,
Timothy A. Beck ,
Jared T. Simpson,
Laurie Tonon ,
Anne-Sophie Sertier,
Ann-Marie Patch ,
Natalie Jäger,
Philip Ginsbach,
Ruben Drews
and 69 other authors
,
Ivo Buchhalter ,
Sophia Derdak,
Barbara Hutter ,
Matthew D. Eldridge,
Eivind Hovig ,
Lawrence E. Heisler,
Timothy A. Beck ,
Jared T. Simpson,
Laurie Tonon ,
Anne-Sophie Sertier,
Ann-Marie Patch ,
Natalie Jäger,
Philip Ginsbach,
Ruben Drews
and 69 other authors
A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
Download from www.nature.com
2013
ItalyJeltje van Baren,
Daniel R. Zerbino,
Michael Zhang,
Cole Trapnell,
Barbara Wold,
Armand Valsesia,
Thomas D. Wu,
David Weese,
Simon White,
Xiaowo Wang,
Jie Wu,
Chenghai Xue,
Thomas Wu,
Giorgio Valle,
Nicola Vitulo
and 75 other authors
Systematic evaluation of spliced alignment programs for RNA-seq data.
Download from www.nature.com
Núria Piqué,
Eleonora Aquilini,
Tyler Alioto ,
David Miñana-Galbis,
Juan M. Tomás
,
David Miñana-Galbis,
Juan M. Tomás
Genome Sequence of Plesiomonas shigelloides Strain 302-73 (Serotype O1)
Download from journals.asm.org
Tyler Alioto ,
Ernesto Picardi,
Roderic Guig?? Serra,
Roderic Guigó ,
Graziano Pesole
,
Ernesto Picardi,
Roderic Guig?? Serra,
Roderic Guigó ,
Graziano Pesole
ASPic-GeneID: a lightweight pipeline for gene prediction and alternative isoforms detection
Download from downloads.hindawi.com
2012
Ian Dunham ,
Marijke J. van Baren,
Lingyun Song,
Nathan D. Trinklein,
Jie Wang,
Lucas D. Ward,
Troy W. Whitfield,
Steven P. Wilder ,
Weisheng Wu,
Hualin S. Xi,
Michael Snyder,
John A. Stamatoyannopoulos,
Scott A. Tenenbaum,
Zhiping Weng,
Kevin P. White
and 560 other authors
,
Marijke J. van Baren,
Lingyun Song,
Nathan D. Trinklein,
Jie Wang,
Lucas D. Ward,
Troy W. Whitfield,
Steven P. Wilder ,
Weisheng Wu,
Hualin S. Xi,
Michael Snyder,
John A. Stamatoyannopoulos,
Scott A. Tenenbaum,
Zhiping Weng,
Kevin P. White
and 560 other authors
An integrated encyclopedia of DNA elements in the human genome
Download from www.nature.com
Sarah Djebali,
Carrie A. Davis,
Angelika Merkel,
Alex Dobin,
Timo Lassmann ,
Ali M. Mortazavi,
Andrea Tanzer ,
Julien Lagarde,
Wei Lin,
Felix Schlesinger,
Chenghai Xue,
Georgi K. Marinov,
Jainab Khatun,
Brian A. Williams,
Chris Zaleski
and 70 other authors
,
Ali M. Mortazavi,
Andrea Tanzer ,
Julien Lagarde,
Wei Lin,
Felix Schlesinger,
Chenghai Xue,
Georgi K. Marinov,
Jainab Khatun,
Brian A. Williams,
Chris Zaleski
and 70 other authors
Landscape of transcription in human cells
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Jordi Garcia-Mas,
Andrej Benjak,
Walter Sanseverino,
Michael Bourgeois,
Gisela Mir ,
V. M. Gonzalez,
Víctor M. González,
Elizabeth Hénaff,
F. Camara,
Francisco Câmara,
Luca Cozzuto ,
Ernesto Lowy,
Tyler Alioto ,
Salvador Capella-Gutiérrez ,
Jose Blanca
and 23 other authors
,
V. M. Gonzalez,
Víctor M. González,
Elizabeth Hénaff,
F. Camara,
Francisco Câmara,
Luca Cozzuto ,
Ernesto Lowy,
Tyler Alioto ,
Salvador Capella-Gutiérrez ,
Jose Blanca
and 23 other authors
The genome of melon (Cucumis melo L.)
Download from doi.org
Jan van Oeveren,
Keygene N. V. Marco G. M. van Schriek,
Peter de Heer,
Lorena daPonte,
Michiel J. T. van Eijk,
Mark J. J. van Haaren,
Asunción Fernandez del Carmen,
Jose van de Belt,
Jan C. van Haarst,
Marjo J. van Staveren,
Roeland C. H. J. van Ham,
Sheila Zuñiga,
Hans H. de Jong,
Shusei Sato,
Satoshi Tabata
and 357 other authors
The tomato genome sequence provides insights into fleshy fruit evolution
Download from www.nature.com
2009
Jennifer Harrow,
Alinda Nagy,
Alexandre Reymond,
Tyler Alioto ,
Laszlo Patthy,
Stylianos E. Antonarakis,
Roderic Guigó
,
Laszlo Patthy,
Stylianos E. Antonarakis,
Roderic Guigó
Identifying protein-coding genes in genomic sequences
Download from dx.doi.org
2007
S. van Calcar,
Paul I. W. de Bakker,
Pieter J. de Jong,
Zhengdong D. Zhang,
Man Yu1,
Xiaoling Xueqing Zhang,
Z. D. D. Zhang,
Sarah Wilcox,
Man Yu,
Xueqing Zhang,
Deyou Y. Zheng,
XiaoDong Zhao,
Carine Wyss,
Jiaqian Q. Wu,
X. Q. Zhang
and 330 other authors
Download from www.nature.com
France Denoeud ,
Philipp Kapranov,
Catherine Ucla,
Adam Frankish ,
Robert Castelo,
Jorg Drenkow,
Julien Lagarde,
Tyler Alioto ,
Caroline Manzano,
Jacqueline Chrast,
Sujit Dike,
Carine Wyss,
Charlotte N. Henrichsen,
Nancy Holroyd,
Mark C. Dickson
and 11 other authors
Download from genome.cshlp.org
,
Philipp Kapranov,
Catherine Ucla,
Adam Frankish ,
Robert Castelo,
Jorg Drenkow,
Julien Lagarde,
Tyler Alioto ,
Caroline Manzano,
Jacqueline Chrast,
Sujit Dike,
Carine Wyss,
Charlotte N. Henrichsen,
Nancy Holroyd,
Mark C. Dickson
and 11 other authors
Download from genome.cshlp.org
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