Minimum Information about a Biosynthetic Gene cluster.

Medema, Marnix H.; Kottmann, Renzo; Yilmaz, Yi; Mh, Medema; Yilmaz, Pelin; Cummings, Matthew; Biggins, John B.; Blin, Kai; Jb, Biggins; de Bruijn, Irene; De Bruijn, I.; Chooi, Yit Heng; Claesen, Jan; Yh, Chooi; Coates, R. Cameron; Cruz-Morales, Pablo; Cameron Coates, R.; Duddela, Srikanth; Düsterhus, Stephanie; Duesterhus, Stephanie; Edwards, Daniel J.; Fewer, David P.; Dj, Edwards; Garg, Neha; Geiger, Christoph; Ju, Juan Pablo; Dp, Fewer; Ju, Jianhua; Gomez-Escribano, Juan Pablo; Greule, Anja; Jp, Gomez Escribano; Hadjithomas, Michalis; Haines, Anthony S.; As, Haines; Helfrich, Eric Jn N.; Hillwig, Matthew L.; Ej, Helfrich; Ishida, Keishi; Jones, Jon; Jones, Adam C.; Ml, Hillwig; Jones, Carla S.; Ju, Katrin; Jungmann, Katrin; Kegler, Carsten; Kim, Hyun Uk; Ac, Jones; Kötter, Peter; Krug, Daniel; Masschelein, Joleen; Koetter, Peter; Melnik, Alexey V.; Cs, Jones; Mantovani, Simone M.; Monroe, Emily A.; Moore, Marcus; Moss, Nathan; Hu, Kim; Nützmann, Hans-Wilhelm; Pan, Guohui; Mantovan, Simone M.; Pati, Amrita; Petras, Daniel; Av, Melnik; Reen, F. Jerry; Nuetzmann, Hans-Wilhelm; Sm, Mantovani; Rosconi, Federico; Rui, Zhe; Ea, Monroe; Tian, Zhenhua; Tobias, Nicholas J.; Yu, Yuta; Wiemann, Philipp; Hw, Nützmann; Tsunematsu, Yuta; Wyckoff, Elizabeth; Jerry Reen, F.; Yan, Xiaohui; Yim, Yi; Yim, Grace; Yu, Fengan; Nj, Tobias; Xie, Yunchang; Aigle, Bertrand; Apel, Alexander K.; Balibar, Carl J.; Balskus, Emily P.; Ak, Apel; Barona-Gómez, Francisco; Cj, Balibar; Bechthold, Andreas; Bode, Helge B.; Ep, Balskus; Borriss, Rainer; Brady, Sean F.; Hb, Bode; Brakhage, Axel A.; Caffrey, Patrick; Sf, Brady; Cheng, Yi-Qiang; Yq, Cheng; Clardy, Jon; Cox, Russell J.; Rj, Cox; De Mot, René; Donadio, Stefano; Ms, Donia; Donia, Mohamed S.; Wa, van der Donk; van der Donk, Wilfred A.; Dorrestein, Pieter C.; Van Der Donk, W. A.; Doyle, Sean; Driessen, Arnold Jm M.; Pc, Dorrestein; Ehling-Schulz, Monika; Entian, Karl-Dieter; Aj, Driessen; Fischbach, Michael A.; Kd, Entian; Gerwick, Lena; Gerwick, William H.; Ma, Fischbach; Gross, Harald; Gust, Bertolt; Höfte, Monica; Hertweck, Christian; Jensen, Jens; Hofte, Monica; Wh, Gerwick; Jensen, Susan E.; Hoefte, M.; Katz, Leonard; Se, Jensen; Kaysser, Leonard; Klassen, Jonathan L.; Jl, Klassen; Keller, Nancy P.; Np, Keller; Kormanec, Jan; Kuipers, Oscar P.; Op, Kuipers; Kuzuyama, Tomohisa; Kyrpides, Nikos C.; Nc, Kyrpides; Kwon, Hyung-Jin; Lautru, Sylvie; Hj, Kwon; Lavigne, Rob; Cy, Lee; Lee, Chia Y.; Linquan, Bai; Da, Mitchell; Liu, Xinyu; Liu, Wen; Mendez, Carmen; Luzhetskyy, Andriy; Mahmud, Taifo; Metsae Ketelae, M.; Mast, Yvonne; Metsä-Ketelä, Mikko; Méndez, Carmen; Bs, Moore; Metsa-Ketela, Mikko; Micklefield, Jason; Lm, Moreira; Mitchell, Douglas A.; Moore, Bradley S.; Moreira, Leonilde M.; Muller, Rolf; Müller, Rolf; Mueller, Rolf; Neilan, Brett A.; Nett, Markus; Ba, Neilan; Nielsen, Jens B.; O'Gara, Fergal; O’Gara, Fergal; Oikawa, Hideaki; Ms, Osburne; Osbourn, Anne; Osburne, Marcia S.; Sm, Payne; Ostash, Bohdan; Payne, Shelley M.; Jl, Pernodet; Pernodet, Jean-Luc; Petricek, Miroslav; Piel, Joern; Jm, Raaijmakers; Ja, Salas; Ploux, Olivier; Raaijmakers, Jos M.; Ek, Schmitt; Salas, José A.; Schmitt, Esther K.; Rf, Seipke; Scott, Barry; Seipke, Ryan F.; Dh, Sherman; Shen, Ben; Mj, Smanski; Sherman, David H.; Sivonen, Kaarina; Rd, Süssmuth; Smanski, Michael J.; Sosio, Margherita; Suessmuth, Roderich D.; Stegmann, Evi; Cm, Thomas; Süssmuth, Roderich D.; Tahlan, Kapil; Aw, Truman; Thomas, Christopher M.; Tang, Yi; Jd, Walton; Truman, Andrew W.; Viaud, Muriel; Ct, Walsh; Walton, Jonathan D.; Gp, van Wezel; Walsh, Christopher T.; Weber, Tilmann; Jm, Willey; van Wezel, Gilles P.; Wilkinson, Barrie; Gd, Wright; Willey, Joanne M.; Wohlleben, Wolfgang; Sb, Zotchev; Wright, Gerard D.; Moore, Jon; Ziemert, Nadine; Zhang, Changsheng; Fo, Glöckner; Zotchev, Sergey B.; Breitling, Rainer; Ju, Guohui; Takano, Eriko; Gloeckner, Frank Oliver; Glöckner, Frank Oliver; Ju, Xiaohui

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Pelin Yilmaz
Medema et al., 2015

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Nature Research, Nature Chemical Biology, 9(11), p. 625-631, 2015

DOI: 10.1038/nchembio.1890

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@article{Medema2015,
  abstract = {A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard. ; Other ; publishedVersion},
  author = {Medema, Marnix H. and Kottmann, Renzo and Yilmaz, Yi and Mh, Medema and Yilmaz, Pelin and Cummings, Matthew and Biggins, John B. and Blin, Kai and Jb, Biggins and de Bruijn, Irene and De Bruijn, I. and Chooi, Yit Heng and Claesen, Jan and Yh, Chooi and Coates, R. Cameron and Cruz-Morales, Pablo and Cameron Coates, R. and Duddela, Srikanth and Düsterhus, Stephanie and Duesterhus, Stephanie and Edwards, Daniel J. and Fewer, David P. and Dj, Edwards and Garg, Neha and Geiger, Christoph and Ju, Juan Pablo and Dp, Fewer and Ju, Jianhua and Gomez-Escribano, Juan Pablo and Greule, Anja and Jp, Gomez Escribano and Hadjithomas, Michalis and Haines, Anthony S. and As, Haines and Helfrich, Eric Jn N. and Hillwig, Matthew L. and Ej, Helfrich and Ishida, Keishi and Jones, Jon and Jones, Adam C. and Ml, Hillwig and Jones, Carla S. and Ju, Katrin and Jungmann, Katrin and Kegler, Carsten and Kim, Hyun Uk and Ac, Jones and Kötter, Peter and Krug, Daniel and Masschelein, Joleen and Koetter, Peter and Melnik, Alexey V. and Cs, Jones and Mantovani, Simone M. and Monroe, Emily A. and Moore, Marcus and Moss, Nathan and Hu, Kim and Nützmann, Hans-Wilhelm and Pan, Guohui and Mantovan, Simone M. and Pati, Amrita and Petras, Daniel and Av, Melnik and Reen, F. Jerry and Nuetzmann, Hans-Wilhelm and Sm, Mantovani and Rosconi, Federico and Rui, Zhe and Ea, Monroe and Tian, Zhenhua and Tobias, Nicholas J. and Yu, Yuta and Wiemann, Philipp and Hw, Nützmann and Tsunematsu, Yuta and Wyckoff, Elizabeth and Jerry Reen, F. and Yan, Xiaohui and Yim, Yi and Yim, Grace and Yu, Fengan and Nj, Tobias and Xie, Yunchang and Aigle, Bertrand and Apel, Alexander K. and Balibar, Carl J. and Balskus, Emily P. and Ak, Apel and Barona-Gómez, Francisco and Cj, Balibar and Bechthold, Andreas and Bode, Helge B. and Ep, Balskus and Borriss, Rainer and Brady, Sean F. and Hb, Bode and Brakhage, Axel A. and Caffrey, Patrick and Sf, Brady and Cheng, Yi-Qiang and Yq, Cheng and Clardy, Jon and Cox, Russell J. and Rj, Cox and De Mot, René and Donadio, Stefano and Ms, Donia and Donia, Mohamed S. and Wa, van der Donk and van der Donk, Wilfred A. and Dorrestein, Pieter C. and Van Der Donk, W. A. and Doyle, Sean and Driessen, Arnold Jm M. and Pc, Dorrestein and Ehling-Schulz, Monika and Entian, Karl-Dieter and Aj, Driessen and Fischbach, Michael A. and Kd, Entian and Gerwick, Lena and Gerwick, William H. and Ma, Fischbach and Gross, Harald and Gust, Bertolt and Höfte, Monica and Hertweck, Christian and Jensen, Jens and Hofte, Monica and Wh, Gerwick and Jensen, Susan E. and Hoefte, M. and Katz, Leonard and Se, Jensen and Kaysser, Leonard and Klassen, Jonathan L. and Jl, Klassen and Keller, Nancy P. and Np, Keller and Kormanec, Jan and Kuipers, Oscar P. and Op, Kuipers and Kuzuyama, Tomohisa and Kyrpides, Nikos C. and Nc, Kyrpides and Kwon, Hyung-Jin and Lautru, Sylvie and Hj, Kwon and Lavigne, Rob and Cy, Lee and Lee, Chia Y. and Linquan, Bai and Da, Mitchell and Liu, Xinyu and Liu, Wen and Mendez, Carmen and Luzhetskyy, Andriy and Mahmud, Taifo and Metsae Ketelae, M. and Mast, Yvonne and Metsä-Ketelä, Mikko and Méndez, Carmen and Bs, Moore and Metsa-Ketela, Mikko and Micklefield, Jason and Lm, Moreira and Mitchell, Douglas A. and Moore, Bradley S. and Moreira, Leonilde M. and Muller, Rolf and Müller, Rolf and Mueller, Rolf and Neilan, Brett A. and Nett, Markus and Ba, Neilan and Nielsen, Jens B. and O'Gara, Fergal and O’Gara, Fergal and Oikawa, Hideaki and Ms, Osburne and Osbourn, Anne and Osburne, Marcia S. and Sm, Payne and Ostash, Bohdan and Payne, Shelley M. and Jl, Pernodet and Pernodet, Jean-Luc and Petricek, Miroslav and Piel, Joern and Jm, Raaijmakers and Ja, Salas and Ploux, Olivier and Raaijmakers, Jos M. and Ek, Schmitt and Salas, José A. and Schmitt, Esther K. and Rf, Seipke and Scott, Barry and Seipke, Ryan F. and Dh, Sherman and Shen, Ben and Mj, Smanski and Sherman, David H. and Sivonen, Kaarina and Rd, Süssmuth and Smanski, Michael J. and Sosio, Margherita and Suessmuth, Roderich D. and Stegmann, Evi and Cm, Thomas and Süssmuth, Roderich D. and Tahlan, Kapil and Aw, Truman and Thomas, Christopher M. and Tang, Yi and Jd, Walton and Truman, Andrew W. and Viaud, Muriel and Ct, Walsh and Walton, Jonathan D. and Gp, van Wezel and Walsh, Christopher T. and Weber, Tilmann and Jm, Willey and van Wezel, Gilles P. and Wilkinson, Barrie and Gd, Wright and Willey, Joanne M. and Wohlleben, Wolfgang and Sb, Zotchev and Wright, Gerard D. and Moore, Jon and Ziemert, Nadine and Zhang, Changsheng and Fo, Glöckner and Zotchev, Sergey B. and Breitling, Rainer and Ju, Guohui and Takano, Eriko and Gloeckner, Frank Oliver and Glöckner, Frank Oliver and Ju, Xiaohui},
  doi = {10.1038/nchembio.1890},
  journal = {Nature Chemical Biology},
  month = {jan},
  pages = {625-631},
  title = {Minimum Information about a Biosynthetic Gene cluster.},
  url = {http://www.nature.com/articles/nchembio.1890.pdf},
  volume = {11},
  year = {2015}
}

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Minimum Information about a Biosynthetic Gene cluster.

Journal article published in 2015 by Marnix H. Medema, Renzo Kottmann, Yi Yilmaz, Medema Mh, Pelin Yilmaz

, Matthew Cummings, John B. Biggins

, Kai Blin

, Biggins Jb, Irene de Bruijn

, I. De Bruijn, Yit Heng Chooi, Jan Claesen, Chooi Yh, R. Cameron Coates and other authors. Marnix H. Medema, Renzo Kottmann, Yi Yilmaz, Medema Mh, Pelin Yilmaz

, Matthew Cummings, John B. Biggins

, Kai Blin

, Biggins Jb, Irene de Bruijn

, I. De Bruijn, Yit Heng Chooi, Jan Claesen, Chooi Yh, R. Cameron Coates, Pablo Cruz-Morales, R. Cameron Coates, Srikanth Duddela, Stephanie Düsterhus, Stephanie Duesterhus, Daniel J. Edwards, David P. Fewer, Edwards Dj, Neha Garg, Christoph Geiger, Juan Pablo Ju, Fewer Dp, Jianhua Ju, Juan Pablo Gomez-Escribano, Anja Greule, Gomez Escribano Jp, Michalis Hadjithomas, Anthony S. Haines, Haines As, Eric Jn N. Helfrich, Matthew L. Hillwig, Helfrich Ej, Keishi Ishida, Jon Jones, Adam C. Jones, Hillwig Ml, Carla S. Jones, Katrin Ju, Katrin Jungmann, Carsten Kegler, Hyun Uk Kim, Jones Ac, Peter Kötter, Daniel Krug, Joleen Masschelein, Peter Koetter, Alexey V. Melnik, Jones Cs, Simone M. Mantovani, Emily A. Monroe, Marcus Moore, Nathan Moss, Kim Hu, Hans-Wilhelm Nützmann, Guohui Pan, Simone M. Mantovan, Amrita Pati, Daniel Petras

, Melnik Av, F. Jerry Reen, Hans-Wilhelm Nuetzmann, Mantovani Sm, Federico Rosconi, Zhe Rui, Monroe Ea, Zhenhua Tian, Nicholas J. Tobias, Yuta Yu, Philipp Wiemann, Nützmann Hw, Yuta Tsunematsu, Elizabeth Wyckoff, F. Jerry Reen, Xiaohui Yan, Yi Yim, Grace Yim, Fengan Yu, Tobias Nj, Yunchang Xie, Bertrand Aigle

, Alexander K. Apel, Carl J. Balibar, Emily P. Balskus, Apel Ak, Francisco Barona-Gómez, Balibar Cj, Andreas Bechthold, Helge B. Bode, Balskus Ep, Rainer Borriss

, Sean F. Brady, Bode Hb, Axel A. Brakhage, Patrick Caffrey, Brady Sf, Yi-Qiang Cheng, Cheng Yq, Jon Clardy, Russell J. Cox, Cox Rj, René De Mot, Stefano Donadio, Donia Ms, Mohamed S. Donia, van der Donk Wa, Wilfred A. van der Donk, Pieter C. Dorrestein, W. A. Van Der Donk, Sean Doyle, Arnold Jm M. Driessen, Dorrestein Pc, Monika Ehling-Schulz, Karl-Dieter Entian, Driessen Aj, Michael A. Fischbach, Entian Kd, Lena Gerwick, William H. Gerwick, Fischbach Ma, Harald Gross, Bertolt Gust, Monica Höfte, Christian Hertweck, Jens Jensen, Monica Hofte, Gerwick Wh, Susan E. Jensen, M. Hoefte, Leonard Katz, Jensen Se, Leonard Kaysser, Jonathan L. Klassen, Klassen Jl, Nancy P. Keller, Keller Np, Jan Kormanec, Oscar P. Kuipers, Kuipers Op, Tomohisa Kuzuyama, Nikos C. Kyrpides, Kyrpides Nc, Hyung-Jin Kwon, Sylvie Lautru

, Kwon Hj, Rob Lavigne, Lee Cy, Chia Y. Lee, Bai Linquan, Mitchell Da, Xinyu Liu, Wen Liu, Carmen Mendez, Andriy Luzhetskyy, Taifo Mahmud

, M. Metsae Ketelae, Yvonne Mast, Mikko Metsä-Ketelä, Carmen Méndez, Moore Bs, Mikko Metsa-Ketela, Jason Micklefield, Moreira Lm, Douglas A. Mitchell

, Bradley S. Moore, Leonilde M. Moreira, Rolf Muller, Rolf Müller, Rolf Mueller, Brett A. Neilan

, Markus Nett, Neilan Ba, Jens B. Nielsen, Fergal O'Gara, Fergal O’Gara, Hideaki Oikawa, Osburne Ms, Anne Osbourn, Marcia S. Osburne, Payne Sm, Bohdan Ostash, Shelley M. Payne, Pernodet Jl, Jean-Luc Pernodet, Miroslav Petricek, Joern Piel, Raaijmakers Jm, Salas Ja, Olivier Ploux, Jos M. Raaijmakers

, Schmitt Ek, José A. Salas, Esther K. Schmitt, Seipke Rf, Barry Scott, Ryan F. Seipke, Sherman Dh, Ben Shen, Smanski Mj, David H. Sherman, Kaarina Sivonen, Süssmuth Rd, Michael J. Smanski, Margherita Sosio, Roderich D. Suessmuth, Evi Stegmann, Thomas Cm, Roderich D. Süssmuth, Kapil Tahlan, Truman Aw, Christopher M. Thomas, Yi Tang, Walton Jd, Andrew W. Truman, Muriel Viaud, Walsh Ct, Jonathan D. Walton, van Wezel Gp, Christopher T. Walsh, Tilmann Weber

, Willey Jm, Gilles P. van Wezel, Barrie Wilkinson, Wright Gd, Joanne M. Willey, Wolfgang Wohlleben, Zotchev Sb, Gerard D. Wright, Jon Moore, Nadine Ziemert, Changsheng Zhang, Glöckner Fo, Sergey B. Zotchev, Rainer Breitling

, Guohui Ju, Eriko Takano, Frank Oliver Gloeckner, Frank Oliver Glöckner, Xiaohui Ju

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Abstract

A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard. ; Other ; publishedVersion

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Minimum Information about a Biosynthetic Gene cluster.

Abstract